Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003069

Physical Location & Seq

Genomic Coordinates Forward (+)

6566823 .. 6571532

Gene Structure 4710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00084090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGATTACTTTGAGTACATGACATTAAATGTGGCGGAAACCAAGTTAGAGGAGTGCTGCAATGTGCCTTCAGACAACCCAAAAGAAGAAGTGCCGCACGCTGTCAAAACGGACACAAAGGGGCAATACGAGAAGATGGAGGGGACTTCCAGAGGGATGTTCTCCCTGTCAGGTTTATCACAGAGAAATGCTGGTAAGGTTGGCGGGGGAAGAGGGAGGAAGAGTTTGGGAACTTGCGCACTACCTGCTTCTAGTGCTGTGCAGGCTGCGGTTAGTCAGCCCCAGATGGAGCAGCAGCCTCAATGTAGGGAGCTGCAGGAACCTGAGGAAAGAAGTATGGCAGTGACAGGTTGGGGTAAGAGGACAAGGCGTCCACCGCGGCAAAGATATCCGATTAATAGTTCTCTGTGTCAGGATTCTACTCCTTCAAATCGACAGCCTGAGCTGCTCAATAACCAGCAGAAAACTATGAATATCAAAAGCCCAAAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF863

Protein Analysis

164

Amino Acids

18.26

Weight (kDa)

9.02

Isoelectric Point (pI)

64.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF863	PF05904	57 - 131	3.6e-10	Plant protein of unknown function (DUF863)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003069)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47740 FvH4_6g47740 FvH4_6g47740 FvH4_6g47740
malus_domestica	MD09G1059300.v1.1 MD17G1054900.v1.1
prunus_persica	Prupe.3G261200_v2.0.a1
pyrus_communis	pycom08g18570 pycom111g05020 pycom111g05040 pycom111g05060 pycom17g05270 pycom17g05290
rosa_chinensis	RchiOBHm_Chr2g0166861 RchiOBHm_Chr4g0401141 RchiOBHm_Chr5g0037041 RchiOBHm_Chr7g0237831
rosa_laevigata	RLG00000021662 RLG00000021675
rosa_multiflora	Rmu_sc0005344.1_g000006
rosa_roxburghii	Rroxscaffold_2G00084060 Rroxscaffold_2G00084090 Rroxscaffold_2G00084470 Rroxscaffold_4G00327630
rosa_rugosa	Rorug02G0525900 Rorug02G0526000
rosa_samantha	Rh2AG592900 Rh2BG604100 Rh2BG604300 Rh2CG575000 Rh2CG575200 Rh2DG615600 Rh2DG615800 Rh3DG312900 Rh4DG186200 Rh5DG059300 Rh5DG383900
rosa_wichuraiana	Rw2G049350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	238
Acc36I	ACCTGC	1 cut(s)	253
AccII	CGCG	1 cut(s)	379
AciI	CCGC	6 cut(s)	35, 95, 204, 269, 377, 379
AcuI	CTGAAG	1 cut(s)	54
AcyI	GRCGYC	1 cut(s)	370
AfaI	GTAC	1 cut(s)	17
AgsI	TTSAA	1 cut(s)	429
AhdI	GACNNNNNGTC	1 cut(s)	369
AluBI	AGCT	2 cut(s)	313, 445
AluI	AGCT	2 cut(s)	313, 445
ApeKI	GCWGC	6 cut(s)	57, 266, 292, 295, 313, 445
AseI	ATTAAT	1 cut(s)	396
AspLEI	GCGC	1 cut(s)	239
AxyI	CCTNAGG	1 cut(s)	324
BbvI	GCAGC	6 cut(s)	44, 253, 300, 304, 307, 432
BccI	CCATC	2 cut(s)	130, 280
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	1 cut(s)	314
BfuAI	ACCTGC	1 cut(s)	253
BisI	GCNGC	8 cut(s)	58, 95, 267, 293, 296, 314, 380, 446
BlsI	GCNGC	8 cut(s)	59, 96, 268, 294, 297, 315, 381, 447
BmeRI	GACNNNNNGTC	1 cut(s)	369
BmiI	GGNNCC	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	441
BsaHI	GRCGYC	1 cut(s)	370
BsaJI	CCNNGG	1 cut(s)	377
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bse21I	CCTNAGG	1 cut(s)	324
Bse3DI	GCAATG	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	1 cut(s)	162
BseMI	GCAATG	1 cut(s)	67
BseMII	CTCAG	2 cut(s)	315, 432
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	6 cut(s)	44, 253, 300, 304, 307, 432
BsgI	GTGCAG	1 cut(s)	281
Bsh1236I	CGCG	1 cut(s)	379
BslFI	GGGAC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	157
BspACI	CCGC	6 cut(s)	35, 95, 204, 269, 377, 379
BspCNI	CTCAG	2 cut(s)	316, 433
BspFNI	CGCG	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	321
BspMAI	CTGCAG	1 cut(s)	318
BspMI	ACCTGC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	377
BssNI	GRCGYC	1 cut(s)	370
Bst6I	CTCTTC	2 cut(s)	205, 215
BstACI	GRCGYC	1 cut(s)	370
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	99, 264
BstDEI	CTNAG	2 cut(s)	324, 441
BstDSI	CCRYGG	1 cut(s)	377
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	239
BstMWI	GCNNNNNNNGC	5 cut(s)	245, 254, 263, 376, 445
BstSFI	CTRYAG	1 cut(s)	314
BstUI	CGCG	1 cut(s)	379
BstV1I	GCAGC	6 cut(s)	44, 253, 300, 304, 307, 432
Bsu36I	CCTNAGG	1 cut(s)	324
BtgI	CCRYGG	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	162
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	348
BveI	ACCTGC	1 cut(s)	253
Cac8I	GCNNGC	2 cut(s)	99, 264
CfoI	GCGC	1 cut(s)	239
Cfr42I	CCGCGG	1 cut(s)	380
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	7 cut(s)	266, 280, 298, 313, 439, 445, 483
CviKI_1	RGCY	7 cut(s)	266, 280, 298, 313, 439, 445, 483
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	2 cut(s)	324, 441
DriI	GACNNNNNGTC	1 cut(s)	369
Eam1104I	CTCTTC	2 cut(s)	205, 215
Eam1105I	GACNNNNNGTC	1 cut(s)	369
EarI	CTCTTC	2 cut(s)	205, 215
EciI	GGCGGA	1 cut(s)	50
Eco32I	GATATC	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	54
Eco81I	CCTNAGG	1 cut(s)	324
EcoRV	GATATC	1 cut(s)	389
FaeI	CATG	1 cut(s)	22
FaiI	YATR	4 cut(s)	20, 338, 470, 493
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	1 cut(s)	18
FauI	CCCGC	1 cut(s)	197
Fnu4HI	GCNGC	8 cut(s)	58, 95, 267, 293, 296, 314, 380, 446
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	8 cut(s)	58, 95, 267, 293, 296, 314, 380, 446
FspBI	CTAG	1 cut(s)	252
FspI	TGCGCA	1 cut(s)	238
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	8 cut(s)	58, 95, 267, 293, 296, 314, 380, 446
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	1 cut(s)	239
Hin1I	GRCGYC	1 cut(s)	370
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HinfI	GANTC	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	2 cut(s)	73, 393
Hpy188III	TCNNGA	2 cut(s)	150, 413
Hpy8I	GTNNAC	1 cut(s)	374
HpyAV	CCTTC	2 cut(s)	78, 435
HpyCH4V	TGCA	3 cut(s)	60, 262, 316
HpyF10VI	GCNNNNNNNGC	5 cut(s)	245, 254, 263, 376, 445
HpyF3I	CTNAG	2 cut(s)	324, 441
Hsp92I	GRCGYC	1 cut(s)	370
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	1 cut(s)	237
KspI	CCGCGG	1 cut(s)	380
LmnI	GCTCC	2 cut(s)	289, 310
Lsp1109I	GCAGC	6 cut(s)	44, 253, 300, 304, 307, 432
MaeI	CTAG	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	343
MboII	GAAGA	4 cut(s)	98, 145, 222, 232
MnlI	CCTC	8 cut(s)	43, 133, 146, 206, 210, 309, 319, 354
MseI	TTAA	2 cut(s)	26, 396
MspA1I	CMGCKG	1 cut(s)	379
MvnI	CGCG	1 cut(s)	379
MwoI	GCNNNNNNNGC	5 cut(s)	245, 254, 263, 376, 445
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	343
NsbI	TGCGCA	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	416
PkrI	GCNGC	8 cut(s)	59, 96, 268, 294, 297, 315, 381, 447
PshBI	ATTAAT	1 cut(s)	396
PspN4I	GGNNCC	1 cut(s)	321
PstI	CTGCAG	1 cut(s)	318
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SacII	CCGCGG	1 cut(s)	380
SaqAI	TTAA	2 cut(s)	26, 396
SatI	GCNGC	8 cut(s)	58, 95, 267, 293, 296, 314, 380, 446
SetI	ASST	7 cut(s)	175, 201, 247, 315, 325, 352, 447
SfcI	CTRYAG	1 cut(s)	314
Sfr303I	CCGCGG	1 cut(s)	380
SgrBI	CCGCGG	1 cut(s)	380
SsiI	CCGC	6 cut(s)	35, 95, 204, 269, 377, 379
SspMI	CTAG	1 cut(s)	252
TaqI	TCGA	1 cut(s)	433
TatI	WGTACW	1 cut(s)	15
TauI	GCSGC	2 cut(s)	97, 382
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	2 cut(s)	26, 396
Tru9I	TTAA	2 cut(s)	26, 396
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	6 cut(s)	57, 266, 292, 295, 313, 445
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	1 cut(s)	485
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	348
VspI	ATTAAT	1 cut(s)	396
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.