pycom17g05290

Plant protein of unknown function (DUF863)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
3673998 .. 3674525
528 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g05290.1

Sequence Viewer

Length: 528 bp
ATGCAAAACAGCAGTGTCCCCAGCCAAAGTAGAGTAGGGATGAAGGACCACGAATCTTTGGATTCCAGAGGGAAGAAGCCTCAAAGGAGATTGTTCAATCTTGAACTCCCAGCCGATGAATACCTCAGTGATGAAGAAGAACCAGAAGGAGGTTGGGGGTTGGGAACAGACAAATCTGGTTGTAACAATAGTGTGTCAAGTTCTGGTTTGCATTTAGTAAGAAGCAATGGTTTGGCTGATCTGAATGAACCTGTTCAGATAGATAAAGTGTCTGCTTCAACTTCTGTCGTTACGTCTGGCAATCACCCAAGCTCCAAAGAGGAGATAAAAAGGCAGGTTTTATCTGCAAATGCGTACAAAGATGTGTGGCCTTTTGCAAAGAAATTCCCTGAAAACCCGCAAACGGGGAAGGATGGAAGAGTTGGTGATCTGCATTCAAAGAATGAAATCCAAAAAGAGTGGTCAACAAATGCTCTCAGAGATGGTAAGGGTCTAGTTATCTTATTTCGTATTTATTTCCATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

176

Amino Acids

19.44

Weight (kDa)

6.52

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF863 PF05904 2 - 47 1.4e-06 Plant protein of unknown function (DUF863)
DUF863 PF05904 56 - 163 6.2e-09 Plant protein of unknown function (DUF863)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 325
AciI CCGC 1 cut(s) 398
AcsI RAATTY 1 cut(s) 383
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 3 cut(s) 149, 403, 404
AgsI TTSAA 4 cut(s) 97, 104, 279, 438
AluBI AGCT 1 cut(s) 312
AluI AGCT 1 cut(s) 312
AoxI GGCC 1 cut(s) 368
ApoI RAATTY 1 cut(s) 383
Asp700I GAANNNNTTC 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 46
AsuHPI GGTGA 2 cut(s) 296, 437
AvaII GGWCC 1 cut(s) 46
BccI CCATC 2 cut(s) 407, 476
BfaI CTAG 1 cut(s) 494
BfuAI ACCTGC 1 cut(s) 325
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 403, 404
Bse3DI GCAATG 1 cut(s) 232
BseGI GGATG 2 cut(s) 45, 418
BseLI CCNNNNNNNGG 3 cut(s) 149, 403, 404
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 2 cut(s) 139, 490
BseRI GAGGAG 1 cut(s) 335
BseYI CCCAGC 2 cut(s) 20, 109
BshFI GGCC 1 cut(s) 370
BslFI GGGAC 1 cut(s) 2
BslI CCNNNNNNNGG 3 cut(s) 149, 403, 404
BsmFI GGGAC 1 cut(s) 2
BsmI GAATGC 1 cut(s) 433
BsnI GGCC 1 cut(s) 370
Bsp143I GATC 2 cut(s) 238, 427
BspACI CCGC 1 cut(s) 398
BspANI GGCC 1 cut(s) 370
BspCNI CTCAG 2 cut(s) 138, 489
BspMI ACCTGC 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 232
BssMI GATC 2 cut(s) 238, 427
Bst6I CTCTTC 1 cut(s) 412
BstDEI CTNAG 2 cut(s) 125, 476
BstF5I GGATG 2 cut(s) 45, 418
BstKTI GATC 2 cut(s) 241, 430
BstMBI GATC 2 cut(s) 238, 427
BsuRI GGCC 1 cut(s) 370
BtsCI GGATG 2 cut(s) 45, 418
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 2 cut(s) 19, 133
BveI ACCTGC 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 355
CspCI CAANNNNNGTGG 2 cut(s) 440, 475
CviJI RGCY 6 cut(s) 24, 79, 113, 236, 312, 370
CviKI_1 RGCY 6 cut(s) 24, 79, 113, 236, 312, 370
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 2 cut(s) 125, 476
DpnI GATC 2 cut(s) 240, 429
DpnII GATC 2 cut(s) 238, 427
Eam1104I CTCTTC 1 cut(s) 412
EarI CTCTTC 1 cut(s) 412
Eco47I GGWCC 1 cut(s) 46
FaqI GGGAC 1 cut(s) 2
FauI CCCGC 1 cut(s) 405
FokI GGATG 2 cut(s) 52, 425
FspBI CTAG 1 cut(s) 494
GsaI CCCAGC 2 cut(s) 24, 113
HaeIII GGCC 1 cut(s) 370
HincII GTYRAC 1 cut(s) 465
HindII GTYRAC 1 cut(s) 465
HinfI GANTC 2 cut(s) 53, 62
HphI GGTGA 2 cut(s) 296, 437
Hpy166II GTNNAC 1 cut(s) 465
Hpy188I TCNGA 3 cut(s) 243, 258, 479
Hpy188III TCNNGA 2 cut(s) 66, 101
Hpy8I GTNNAC 1 cut(s) 465
HpyAV CCTTC 3 cut(s) 37, 140, 403
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 5 cut(s) 4, 211, 347, 377, 433
HpyF3I CTNAG 2 cut(s) 125, 476
HpySE526I ACGT 1 cut(s) 293
Kzo9I GATC 2 cut(s) 238, 427
LmnI GCTCC 1 cut(s) 317
MaeI CTAG 1 cut(s) 494
MaeII ACGT 1 cut(s) 293
MaeIII GTNAC 2 cut(s) 182, 289
MalI GATC 2 cut(s) 240, 429
MboI GATC 2 cut(s) 238, 427
MboII GAAGA 4 cut(s) 85, 146, 149, 429
MluCI AATT 1 cut(s) 383
MnlI CCTC 5 cut(s) 62, 90, 134, 143, 313
MroXI GAANNNNTTC 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 433
NdeII GATC 2 cut(s) 238, 427
PctI GAATGC 1 cut(s) 433
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 2 cut(s) 53, 62
PspFI CCCAGC 2 cut(s) 20, 109
PspPI GGNCC 1 cut(s) 46
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
Sau3AI GATC 2 cut(s) 238, 427
Sau96I GGNCC 1 cut(s) 46
SetI ASST 6 cut(s) 126, 154, 253, 296, 314, 339
SinI GGWCC 1 cut(s) 46
Sse9I AATT 1 cut(s) 383
SsiI CCGC 1 cut(s) 398
SspMI CTAG 1 cut(s) 494
TaiI ACGT 1 cut(s) 296
TasI AATT 1 cut(s) 383
TfiI GAWTC 2 cut(s) 53, 62
TscAI CASTG 2 cut(s) 19, 133
TspDTI ATGAA 5 cut(s) 56, 132, 147, 261, 459
TspRI CASTG 2 cut(s) 19, 133
VpaK11BI GGWCC 1 cut(s) 46
XapI RAATTY 1 cut(s) 383
XcmI CCANNNNNNNNNTGG 1 cut(s) 150
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.