Rorug02G0526000

Plant protein of unknown function (DUF863)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003069
Physical Location & Seq
Reverse (-)
65619239 .. 65619857
619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0526000.1

Sequence Viewer

Length: 399 bp
ATGGCATTCAACTTCATGTCGAAGCTCACTCAACAATCCCTACTACTACTACTAGTAGTTTTGGTTTTTGCCAGAAGTTTAGCTGAAGCTAGTGATCTCAAAGAAACCCAATTAGTCTTGTACTTCCAAGACTTCACTGCAGGTCCAAATACCTCGAGCATACCAGTTGCAGGCATCGCCGGAAAGCTGTGGACCTTCACTCAATTCGGAACAATTTATGTCACCGATGACACCATGACCCAAGGACCGAACATAACATCTCCCATAGTGGGACGGGCCCAAGGCATAACGGTGGCATCGGCATTAGACGGAAGCAATGCCCTTGTCTTGGTGTCTCTTGTGTTCACAAACATGGAGTACAATATATGGCAGCACTCTAGAGATACAAGGAAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF863

Protein Analysis

132

Amino Acids

14.47

Weight (kDa)

5.63

Isoelectric Point (pI)

26.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dirigent PF03018 36 - 121 2.2e-21 Dirigent-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 105
AfaI GTAC 2 cut(s) 122, 359
AfiI CCNNNNNNNGG 3 cut(s) 170, 269, 328
AgsI TTSAA 1 cut(s) 10
AhlI ACTAGT 1 cut(s) 52
AluBI AGCT 4 cut(s) 25, 83, 89, 187
AluI AGCT 4 cut(s) 25, 83, 89, 187
Alw26I GTCTC 1 cut(s) 339
Ama87I CYCGRG 1 cut(s) 154
AoxI GGCC 1 cut(s) 276
ApaI GGGCCC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 370
AspS9I GGNCC 5 cut(s) 143, 192, 245, 276, 277
AsuHPI GGTGA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 154
AvaII GGWCC 3 cut(s) 143, 192, 245
BaeGI GKGCMC 1 cut(s) 280
BanII GRGCYC 1 cut(s) 280
BbvI GCAGC 1 cut(s) 382
BcoDI GTCTC 1 cut(s) 339
BcuI ACTAGT 1 cut(s) 52
BfaI CTAG 3 cut(s) 53, 90, 378
BfmI CTRYAG 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 131
BisI GCNGC 1 cut(s) 371
BlsI GCNGC 1 cut(s) 372
Bme18I GGWCC 3 cut(s) 143, 192, 245
BmeT110I CYCGRG 1 cut(s) 154
BmgT120I GGNCC 5 cut(s) 143, 192, 245, 276, 277
BmiI GGNNCC 1 cut(s) 278
BmsI GCATC 2 cut(s) 183, 305
BsaJI CCNNGG 2 cut(s) 241, 280
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 269, 328
Bse1I ACTGG 1 cut(s) 164
Bse3DI GCAATG 1 cut(s) 322
BseDI CCNNGG 2 cut(s) 241, 280
BseLI CCNNNNNNNGG 3 cut(s) 170, 269, 328
BseMI GCAATG 1 cut(s) 322
BseNI ACTGG 1 cut(s) 164
BseSI GKGCMC 1 cut(s) 280
BseXI GCAGC 1 cut(s) 382
BshFI GGCC 1 cut(s) 278
BsiHKCI CYCGRG 1 cut(s) 154
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 3 cut(s) 170, 269, 328
BsmAI GTCTC 1 cut(s) 339
BsmFI GGGAC 1 cut(s) 285
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 154
Bsp120I GGGCCC 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 280
Bsp143I GATC 1 cut(s) 94
BspANI GGCC 1 cut(s) 278
BspLI GGNNCC 1 cut(s) 278
BspMAI CTGCAG 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 322
BsrI ACTGG 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 241, 280
BssMI GATC 1 cut(s) 94
BssT1I CCWWGG 2 cut(s) 241, 280
Bst4CI ACNGT 2 cut(s) 292, 396
BstC8I GCNNGC 1 cut(s) 172
BstKTI GATC 1 cut(s) 97
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstSFI CTRYAG 1 cut(s) 138
BstSLI GKGCMC 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 382
BsuRI GGCC 1 cut(s) 278
BtgZI GCGATG 1 cut(s) 160
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 135
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 172
Cfr13I GGNCC 5 cut(s) 143, 192, 245, 276, 277
Csp6I GTAC 2 cut(s) 121, 358
CviAII CATG 3 cut(s) 16, 235, 352
CviJI RGCY 5 cut(s) 25, 83, 89, 187, 278
CviKI_1 RGCY 5 cut(s) 25, 83, 89, 187, 278
CviQI GTAC 2 cut(s) 121, 358
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eco130I CCWWGG 2 cut(s) 241, 280
Eco24I GRGCYC 1 cut(s) 280
Eco47I GGWCC 3 cut(s) 143, 192, 245
Eco57I CTGAAG 1 cut(s) 105
Eco88I CYCGRG 1 cut(s) 154
EcoT14I CCWWGG 2 cut(s) 241, 280
EcoT38I GRGCYC 1 cut(s) 280
ErhI CCWWGG 2 cut(s) 241, 280
FaeI CATG 3 cut(s) 19, 238, 355
FaqI GGGAC 1 cut(s) 285
FatI CATG 3 cut(s) 15, 234, 351
Fnu4HI GCNGC 1 cut(s) 371
FriOI GRGCYC 1 cut(s) 280
Fsp4HI GCNGC 1 cut(s) 371
FspBI CTAG 3 cut(s) 53, 90, 378
GluI GCNGC 1 cut(s) 371
HaeIII GGCC 1 cut(s) 278
HapII CCGG 1 cut(s) 180
Hin1II CATG 3 cut(s) 19, 238, 355
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 192, 345
Hpy188I TCNGA 1 cut(s) 209
Hpy188III TCNNGA 1 cut(s) 378
Hpy8I GTNNAC 2 cut(s) 192, 345
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 2 cut(s) 292, 396
HpyCH4V TGCA 2 cut(s) 140, 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
Hsp92II CATG 3 cut(s) 19, 238, 355
Kzo9I GATC 1 cut(s) 94
LpnPI CCDG 5 cut(s) 85, 126, 156, 177, 193
Lsp1109I GCAGC 1 cut(s) 382
LweI GCATC 2 cut(s) 183, 305
MaeI CTAG 3 cut(s) 53, 90, 378
MaeIII GTNAC 1 cut(s) 220
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 280
MluCI AATT 3 cut(s) 110, 203, 213
MnlI CCTC 1 cut(s) 163
MslI CAYNNNNRTG 2 cut(s) 290, 350
MspI CCGG 1 cut(s) 180
Mva1269I GAATGC 1 cut(s) 5
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 1 cut(s) 94
NlaIII CATG 3 cut(s) 19, 238, 355
NlaIV GGNNCC 1 cut(s) 278
NmuCI GTSAC 1 cut(s) 220
PaeR7I CTCGAG 1 cut(s) 154
PctI GAATGC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 278
PspOMI GGGCCC 1 cut(s) 276
PspPI GGNCC 5 cut(s) 143, 192, 245, 276, 277
PspXI VCTCGAGB 1 cut(s) 154
PstI CTGCAG 1 cut(s) 142
RsaI GTAC 2 cut(s) 122, 359
RsaNI GTAC 2 cut(s) 121, 358
RseI CAYNNNNRTG 2 cut(s) 290, 350
SatI GCNGC 1 cut(s) 371
Sau3AI GATC 1 cut(s) 94
Sau96I GGNCC 5 cut(s) 143, 192, 245, 276, 277
SduI GDGCHC 1 cut(s) 280
SetI ASST 7 cut(s) 27, 85, 91, 145, 155, 189, 197
SfaNI GCATC 2 cut(s) 183, 305
SfcI CTRYAG 1 cut(s) 138
Sfr274I CTCGAG 1 cut(s) 154
SinI GGWCC 3 cut(s) 143, 192, 245
SlaI CTCGAG 1 cut(s) 154
SmiMI CAYNNNNRTG 2 cut(s) 290, 350
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
SpeI ACTAGT 1 cut(s) 52
Sse9I AATT 3 cut(s) 110, 203, 213
SspMI CTAG 3 cut(s) 53, 90, 378
StyI CCWWGG 2 cut(s) 241, 280
TaaI ACNGT 2 cut(s) 292, 396
TaqI TCGA 2 cut(s) 20, 155
TaqII GACCGA 1 cut(s) 262
TasI AATT 3 cut(s) 110, 203, 213
TatI WGTACW 2 cut(s) 120, 357
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 1 cut(s) 370
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 4
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 3 cut(s) 143, 192, 245
XbaI TCTAGA 1 cut(s) 377
XhoI CTCGAG 1 cut(s) 154
XspI CTAG 3 cut(s) 53, 90, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.