Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0003069

Physical Location & Seq

Genomic Coordinates Forward (+)

3190817 .. 3192039

Gene Structure 1223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g05020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGCTTCTCGGGTTAATTGCAGGAATGGGAACCGAAGTGCAGTCAAAGATGTATTTCCCAGGATATTATTCCATACAGAATCTAAGCAGTACTGTCAGCCATGGGAGCTGGTCCCGACTCCACGAGAACAGAAACTTGAAGAATGGGCAACAATATGACGTATTCTTGACAAGGCCAGTTACTGATGGATTTCACGGATGCGATAAGGAACAATTGAGGCAAACTATACTGAAGCATGAATCAATATTCAAGCACCAGCTCAATGAACTCCACCATCTTTACGAAAGGGAAAAGGACCTGATGAACGAGATGAGAAGCACAGAGTTGCTCAAACATCAAAAAGCAACAGGGGTATCACAATCAAATTTCTCATCATCCGGCTTTCCAACTGGAGACGATACAAAGAGTTGGCATCTTTCTAATTTACCCTTGGTGGATTCCAGTTATGGTAGACAATGTACATTGAGTACTTGCATCAGCCACTCTCCTTGTGATTCTTTTGGAAAAACCCTGCCAAACTGCAGTGTCCCCAGCCAAAGTAGAGTAGGGATGAAGGACCATGAATCTTTGGATTCCAGAGGGAAGAAGCCTCGAAGAAAATTGTTTAATCTTGAACTTCCAGCCGAGGAATGCCTCAGTGACGAAGAAGAACCAGGTGGAGGTTTGGGGTTGGGAACGGACAAATCTGGCTGTAACAATAATGCATCGAGCTCTGATTTGCATTTGGTAAGAAGCAATGGTTTGACTGATCTGAATGAACCTTTTCAGATGGACAAAGTGTCTGCTTCAACTTCTGTCGTTATGTCTGGCAATCACCTGAGCTCCAAAGAGGAGATAGAAAGGCAGGTTTTATCTGCAAATGCATACAAAGGGGGGTGGCCTTTTGCAAAGAAATTCCCTGAAAACCCACAAGCCAGGAAGGATGGAGGAGTTCATGATCTGCATTCAAAGAATGAATTCCAAAAAGAATGGTCAACAAATGCTCTCAAAGCTGGTAAGGGTCTAGTTATCTTATTTCGTGTTTATTTCCATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF863

Protein Analysis

346

Amino Acids

38.56

Weight (kDa)

7.69

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003069)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47740 FvH4_6g47740 FvH4_6g47740 FvH4_6g47740
malus_domestica	MD09G1059300.v1.1 MD17G1054900.v1.1
prunus_persica	Prupe.3G261200_v2.0.a1
pyrus_communis	pycom08g18570 pycom111g05020 pycom111g05040 pycom111g05060 pycom17g05270 pycom17g05290
rosa_chinensis	RchiOBHm_Chr2g0166861 RchiOBHm_Chr4g0401141 RchiOBHm_Chr5g0037041 RchiOBHm_Chr7g0237831
rosa_laevigata	RLG00000021662 RLG00000021675
rosa_multiflora	Rmu_sc0005344.1_g000006
rosa_roxburghii	Rroxscaffold_2G00084060 Rroxscaffold_2G00084090 Rroxscaffold_2G00084470 Rroxscaffold_4G00327630
rosa_rugosa	Rorug02G0525900 Rorug02G0526000
rosa_samantha	Rh2AG592900 Rh2BG604100 Rh2BG604300 Rh2CG575000 Rh2CG575200 Rh2DG615600 Rh2DG615800 Rh3DG312900 Rh4DG186200 Rh5DG059300 Rh5DG383900
rosa_wichuraiana	Rw2G049350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	835
AccI	GTMKAC	1 cut(s)	451
AcsI	RAATTY	3 cut(s)	364, 893, 956
AcuI	CTGAAG	1 cut(s)	251
AfaI	GTAC	3 cut(s)	91, 460, 469
AfiI	CCNNNNNNNGG	1 cut(s)	659
AgsI	TTSAA	5 cut(s)	139, 250, 614, 789, 948
AhdI	GACNNNNNGTC	1 cut(s)	778
AjnI	CCWGG	3 cut(s)	58, 652, 914
AluBI	AGCT	5 cut(s)	108, 259, 711, 822, 992
AluI	AGCT	5 cut(s)	108, 259, 711, 822, 992
Alw21I	GWGCWC	2 cut(s)	713, 824
Alw26I	GTCTC	1 cut(s)	387
AlwNI	CAGNNNCTG	1 cut(s)	182
Ama87I	CYCGRG	1 cut(s)	8
AoxI	GGCC	2 cut(s)	173, 878
ApoI	RAATTY	3 cut(s)	364, 893, 956
Asp700I	GAANNNNTTC	2 cut(s)	762, 956
AspS9I	GGNCC	3 cut(s)	111, 295, 556
AsuHPI	GGTGA	1 cut(s)	806
AvaI	CYCGRG	1 cut(s)	8
AvaII	GGWCC	3 cut(s)	111, 295, 556
BaeI	ACNNNNGTAYC	2 cut(s)	336, 369
BanII	GRGCYC	2 cut(s)	713, 824
BauI	CACGAG	1 cut(s)	122
Bbv12I	GWGCWC	2 cut(s)	713, 824
BccI	CCATC	4 cut(s)	179, 282, 763, 917
BciT130I	CCWGG	3 cut(s)	60, 654, 916
BcoDI	GTCTC	1 cut(s)	387
BfaI	CTAG	1 cut(s)	1004
BfmI	CTRYAG	1 cut(s)	520
BfuAI	ACCTGC	1 cut(s)	835
BmcAI	AGTACT	2 cut(s)	91, 469
Bme1390I	CCNGG	3 cut(s)	60, 654, 916
Bme18I	GGWCC	3 cut(s)	111, 295, 556
BmeRI	GACNNNNNGTC	1 cut(s)	778
BmeT110I	CYCGRG	1 cut(s)	8
BmgT120I	GGNCC	3 cut(s)	111, 295, 556
BmiI	GGNNCC	2 cut(s)	31, 113
BmrFI	CCNGG	3 cut(s)	60, 654, 916
BmsI	GCATC	4 cut(s)	188, 421, 483, 713
BpmI	CTGGAG	1 cut(s)	411
Bpu10I	CCTNAGC	1 cut(s)	818
BsaJI	CCNNGG	4 cut(s)	58, 100, 429, 624
BsaXI	ACNNNNNCTCC	2 cut(s)	806, 836
Bsc4I	CCNNNNNNNGG	1 cut(s)	659
Bse1I	ACTGG	3 cut(s)	176, 394, 441
Bse3DI	GCAATG	1 cut(s)	742
BseBI	CCWGG	3 cut(s)	60, 654, 916
BseDI	CCNNGG	4 cut(s)	58, 100, 429, 624
BseGI	GGATG	4 cut(s)	203, 374, 555, 928
BseLI	CCNNNNNNNGG	1 cut(s)	659
BseMI	GCAATG	1 cut(s)	742
BseMII	CTCAG	2 cut(s)	649, 809
BseNI	ACTGG	3 cut(s)	176, 394, 441
BseRI	GAGGAG	2 cut(s)	845, 942
BseYI	CCCAGC	1 cut(s)	530
BsgI	GTGCAG	1 cut(s)	59
BshFI	GGCC	2 cut(s)	175, 880
BsiHKAI	GWGCWC	2 cut(s)	713, 824
BsiHKCI	CYCGRG	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	378
BslFI	GGGAC	2 cut(s)	97, 512
BslI	CCNNNNNNNGG	1 cut(s)	659
BsmAI	GTCTC	1 cut(s)	387
BsmBI	CGTCTC	1 cut(s)	387
BsmFI	GGGAC	2 cut(s)	97, 512
BsmI	GAATGC	2 cut(s)	635, 943
BsnI	GGCC	2 cut(s)	175, 880
BsoBI	CYCGRG	1 cut(s)	8
Bsp1286I	GDGCHC	2 cut(s)	713, 824
Bsp1407I	TGTACA	1 cut(s)	458
Bsp143I	GATC	2 cut(s)	748, 937
Bsp19I	CCATGG	1 cut(s)	100
BspANI	GGCC	2 cut(s)	175, 880
BspCNI	CTCAG	2 cut(s)	648, 810
BspHI	TCATGA	1 cut(s)	934
BspLI	GGNNCC	2 cut(s)	31, 113
BspMAI	CTGCAG	1 cut(s)	524
BspMI	ACCTGC	1 cut(s)	835
BsrDI	GCAATG	1 cut(s)	742
BsrGI	TGTACA	1 cut(s)	458
BsrI	ACTGG	3 cut(s)	176, 394, 441
BssECI	CCNNGG	4 cut(s)	58, 100, 429, 624
BssMI	GATC	2 cut(s)	748, 937
BssSI	CACGAG	1 cut(s)	122
BssT1I	CCWWGG	2 cut(s)	100, 429
Bst2BI	CACGAG	1 cut(s)	122
Bst2UI	CCWGG	3 cut(s)	60, 654, 916
Bst4CI	ACNGT	1 cut(s)	94
BstAUI	TGTACA	1 cut(s)	458
BstDEI	CTNAG	3 cut(s)	83, 635, 818
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	4 cut(s)	203, 374, 555, 928
BstKTI	GATC	2 cut(s)	751, 940
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	2 cut(s)	748, 937
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 989
BstNI	CCWGG	3 cut(s)	60, 654, 916
BstSCI	CCNGG	3 cut(s)	58, 652, 914
BstSFI	CTRYAG	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	175, 880
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	4 cut(s)	203, 374, 555, 928
BtsI	GCAGTG	1 cut(s)	529
BtsIMutI	CAGTG	2 cut(s)	529, 643
BveI	ACCTGC	1 cut(s)	835
CaiI	CAGNNNCTG	1 cut(s)	182
CciI	TCATGA	1 cut(s)	934
Cfr13I	GGNCC	3 cut(s)	111, 295, 556
CsiI	ACCWGGT	1 cut(s)	652
Csp6I	GTAC	3 cut(s)	90, 459, 468
CspCI	CAANNNNNGTGG	2 cut(s)	470, 505
CviAII	CATG	4 cut(s)	101, 236, 560, 935
CviQI	GTAC	3 cut(s)	90, 459, 468
DdeI	CTNAG	3 cut(s)	83, 635, 818
DpnI	GATC	2 cut(s)	750, 939
DpnII	GATC	2 cut(s)	748, 937
DriI	GACNNNNNGTC	1 cut(s)	778
Eam1105I	GACNNNNNGTC	1 cut(s)	778
Ecl136II	GAGCTC	2 cut(s)	711, 822
Eco130I	CCWWGG	2 cut(s)	100, 429
Eco24I	GRGCYC	2 cut(s)	713, 824
Eco47I	GGWCC	3 cut(s)	111, 295, 556
Eco53kI	GAGCTC	2 cut(s)	711, 822
Eco57I	CTGAAG	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	8
EcoICRI	GAGCTC	2 cut(s)	711, 822
EcoO109I	RGGNCCY	1 cut(s)	295
EcoRI	GAATTC	1 cut(s)	956
EcoRII	CCWGG	3 cut(s)	58, 652, 914
EcoT14I	CCWWGG	2 cut(s)	100, 429
EcoT22I	ATGCAT	2 cut(s)	706, 865
EcoT38I	GRGCYC	2 cut(s)	713, 824
ErhI	CCWWGG	2 cut(s)	100, 429
Esp3I	CGTCTC	1 cut(s)	387
FaeI	CATG	4 cut(s)	104, 239, 563, 938
FaqI	GGGAC	2 cut(s)	97, 512
FatI	CATG	4 cut(s)	100, 235, 559, 934
FblI	GTMKAC	1 cut(s)	451
FokI	GGATG	4 cut(s)	210, 361, 562, 935
FriOI	GRGCYC	2 cut(s)	713, 824
FspBI	CTAG	1 cut(s)	1004
GsaI	CCCAGC	1 cut(s)	534
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	2 cut(s)	175, 880
HapII	CCGG	1 cut(s)	378
Hin1II	CATG	4 cut(s)	104, 239, 563, 938
HincII	GTYRAC	1 cut(s)	975
HindII	GTYRAC	1 cut(s)	975
HinfI	GANTC	7 cut(s)	79, 117, 239, 437, 494, 563, 572
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	1 cut(s)	806
Hpy166II	GTNNAC	2 cut(s)	452, 975
Hpy188I	TCNGA	3 cut(s)	715, 753, 768
Hpy188III	TCNNGA	5 cut(s)	114, 166, 576, 611, 935
Hpy8I	GTNNAC	2 cut(s)	452, 975
HpyAV	CCTTC	2 cut(s)	547, 913
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 989
HpyF3I	CTNAG	3 cut(s)	83, 635, 818
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	4 cut(s)	104, 239, 563, 938
Kzo9I	GATC	2 cut(s)	748, 937
LmnI	GCTCC	2 cut(s)	105, 827
LweI	GCATC	4 cut(s)	188, 421, 483, 713
MabI	ACCWGGT	1 cut(s)	652
MaeI	CTAG	1 cut(s)	1004
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	3 cut(s)	178, 638, 692
MalI	GATC	2 cut(s)	750, 939
MboI	GATC	2 cut(s)	748, 937
MboII	GAAGA	5 cut(s)	151, 595, 606, 656, 659
MfeI	CAATTG	1 cut(s)	212
MhlI	GDGCHC	2 cut(s)	713, 824
MluCI	AATT	7 cut(s)	15, 212, 364, 421, 599, 893, 956
MlyI	GAGTC	1 cut(s)	111
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	8 cut(s)	210, 572, 600, 619, 644, 653, 823, 920
Mph1103I	ATGCAT	2 cut(s)	706, 865
MroXI	GAANNNNTTC	2 cut(s)	762, 956
MseI	TTAA	2 cut(s)	14, 606
MspI	CCGG	1 cut(s)	378
MspR9I	CCNGG	3 cut(s)	60, 654, 916
MunI	CAATTG	1 cut(s)	212
Mva1269I	GAATGC	2 cut(s)	635, 943
MvaI	CCWGG	3 cut(s)	60, 654, 916
MwoI	GCNNNNNNNGC	2 cut(s)	105, 989
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	2 cut(s)	748, 937
NlaIII	CATG	4 cut(s)	104, 239, 563, 938
NlaIV	GGNNCC	2 cut(s)	31, 113
NmeAIII	GCCGAG	1 cut(s)	649
NmuCI	GTSAC	1 cut(s)	638
NsiI	ATGCAT	2 cut(s)	706, 865
PagI	TCATGA	1 cut(s)	934
PctI	GAATGC	2 cut(s)	635, 943
PdmI	GAANNNNTTC	2 cut(s)	762, 956
PfeI	GAWTC	6 cut(s)	79, 239, 437, 494, 563, 572
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
PpuMI	RGGWCCY	1 cut(s)	295
Psp124BI	GAGCTC	2 cut(s)	713, 824
Psp5II	RGGWCCY	1 cut(s)	295
Psp6I	CCWGG	3 cut(s)	58, 652, 914
PspFI	CCCAGC	1 cut(s)	530
PspGI	CCWGG	3 cut(s)	58, 652, 914
PspN4I	GGNNCC	2 cut(s)	31, 113
PspPI	GGNCC	3 cut(s)	111, 295, 556
PspPPI	RGGWCCY	1 cut(s)	295
PstI	CTGCAG	1 cut(s)	524
PstNI	CAGNNNCTG	1 cut(s)	182
RsaI	GTAC	3 cut(s)	91, 460, 469
RsaNI	GTAC	3 cut(s)	90, 459, 468
SacI	GAGCTC	2 cut(s)	713, 824
SaqAI	TTAA	2 cut(s)	14, 606
Sau3AI	GATC	2 cut(s)	748, 937
Sau96I	GGNCC	3 cut(s)	111, 295, 556
ScaI	AGTACT	2 cut(s)	91, 469
SchI	GAGTC	1 cut(s)	111
ScrFI	CCNGG	3 cut(s)	60, 654, 916
SduI	GDGCHC	2 cut(s)	713, 824
SexAI	ACCWGGT	1 cut(s)	652
SfaNI	GCATC	4 cut(s)	188, 421, 483, 713
SfcI	CTRYAG	1 cut(s)	520
SinI	GGWCC	3 cut(s)	111, 295, 556
Sse9I	AATT	7 cut(s)	15, 212, 364, 421, 599, 893, 956
SspI	AATATT	1 cut(s)	246
SspMI	CTAG	1 cut(s)	1004
SstI	GAGCTC	2 cut(s)	713, 824
StyD4I	CCNGG	3 cut(s)	58, 652, 914
StyI	CCWWGG	2 cut(s)	100, 429
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	2 cut(s)	592, 707
TasI	AATT	7 cut(s)	15, 212, 364, 421, 599, 893, 956
TatI	WGTACW	3 cut(s)	89, 458, 467
TfiI	GAWTC	6 cut(s)	79, 239, 437, 494, 563, 572
Tru1I	TTAA	2 cut(s)	14, 606
Tru9I	TTAA	2 cut(s)	14, 606
TscAI	CASTG	2 cut(s)	529, 643
TseFI	GTSAC	1 cut(s)	638
Tsp45I	GTSAC	1 cut(s)	638
TspDTI	ATGAA	8 cut(s)	252, 279, 317, 566, 576, 771, 923, 969
TspGWI	ACGGA	2 cut(s)	210, 692
TspRI	CASTG	2 cut(s)	529, 643
VpaK11BI	GGWCC	3 cut(s)	111, 295, 556
XapI	RAATTY	3 cut(s)	364, 893, 956
XmiI	GTMKAC	1 cut(s)	451
XmnI	GAANNNNTTC	2 cut(s)	762, 956
XspI	CTAG	1 cut(s)	1004
ZrmI	AGTACT	2 cut(s)	91, 469
Zsp2I	ATGCAT	2 cut(s)	706, 865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.