Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003069

Physical Location & Seq

Genomic Coordinates Forward (+)

59064087 .. 59075956

Gene Structure 11870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG383900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGATGACTGCAACTCGACCCACCTGGGCTCCTGCAAAAGGTGGTAATGAACAAGGTCACTCAGCCGCTGTCTCCAACCCTCCATCCATTGCCTCCAGGCCTCCGTCTCAGTCTCGACCACGGCCTCAGTCTCCGATCGACCACGGCCTCAGTCCATTCTCTCAGATCGACCACGGGCTCTGTCTCATTCTCTCAGATCGACTCACTCTCACACGGCCTCCGTCTCAGTCTCGACCACGGCCTCAGTCTCCGATCGACCACGGCCTCAGTCCATTCTCTCAGATCGACCACGGGCTCTGTCTCATTCTCTCAGATCGACTCACTCTCACACGGCCTCCGTCTCAGTCTCGACCACGGCCTCAGTCTCCGATCGACCACGGCCTCAGTCCATTCTCTCAGTCGACCACGGGCTCTGTCTCATTCTCTCAGATCGACTCACTCTCACACGGCCTCCGTCTCAGTCTCGACCACGGCCTCAGTCTTCGACCACCACGGCCTCAGTCCAGCCCTTCGACTCTGTCTCAGTCTCGACCAAGTCTTTTTCGATTGATGAGTAAGAGCAAACAAAGGATCAGCCTTGGTTTGAGAAAAATCAAAACTTTGTTTTCTGAGGTGTTAATCGAGCAGGGATGTACCAATTATGCAGGGCTGCAGGCAGATTCTAAGTGTGAACCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

24.57

Weight (kDa)

10.55

Isoelectric Point (pI)

92.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003069)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47740 FvH4_6g47740 FvH4_6g47740 FvH4_6g47740
malus_domestica	MD09G1059300.v1.1 MD17G1054900.v1.1
prunus_persica	Prupe.3G261200_v2.0.a1
pyrus_communis	pycom08g18570 pycom111g05020 pycom111g05040 pycom111g05060 pycom17g05270 pycom17g05290
rosa_chinensis	RchiOBHm_Chr2g0166861 RchiOBHm_Chr4g0401141 RchiOBHm_Chr5g0037041 RchiOBHm_Chr7g0237831
rosa_laevigata	RLG00000021662 RLG00000021675
rosa_multiflora	Rmu_sc0005344.1_g000006
rosa_roxburghii	Rroxscaffold_2G00084060 Rroxscaffold_2G00084090 Rroxscaffold_2G00084470 Rroxscaffold_4G00327630
rosa_rugosa	Rorug02G0525900 Rorug02G0526000
rosa_samantha	Rh2AG592900 Rh2BG604100 Rh2BG604300 Rh2CG575000 Rh2CG575200 Rh2DG615600 Rh2DG615800 Rh3DG312900 Rh4DG186200 Rh5DG059300 Rh5DG383900
rosa_wichuraiana	Rw2G049350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	401
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	1 cut(s)	578
AfaI	GTAC	1 cut(s)	634
AfiI	CCNNNNNNNGG	1 cut(s)	38
AjnI	CCWGG	2 cut(s)	23, 95
AlwI	GGATC	1 cut(s)	578
AlwNI	CAGNNNCTG	1 cut(s)	68
ApeKI	GCWGC	1 cut(s)	649
BanII	GRGCYC	4 cut(s)	31, 180, 297, 413
BbsI	GAAGAC	1 cut(s)	473
BbvI	GCAGC	1 cut(s)	636
BccI	CCATC	1 cut(s)	91
BciT130I	CCWGG	2 cut(s)	25, 97
BfmI	CTRYAG	1 cut(s)	650
BisI	GCNGC	2 cut(s)	66, 650
BlsI	GCNGC	2 cut(s)	67, 651
Bme1390I	CCNGG	2 cut(s)	25, 97
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	2 cut(s)	25, 97
BpiI	GAAGAC	1 cut(s)	473
BpmI	CTGGAG	1 cut(s)	79
BsaXI	ACNNNNNCTCC	8 cut(s)	13, 43, 202, 232, 319, 349, 435, 465
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	87
BseBI	CCWGG	2 cut(s)	25, 97
BseGI	GGATG	2 cut(s)	83, 635
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMI	GCAATG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	636
Bsh1285I	CGRYCG	3 cut(s)	138, 255, 372
BsiEI	CGRYCG	3 cut(s)	138, 255, 372
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmBI	CGTCTC	4 cut(s)	111, 228, 345, 461
Bsp1286I	GDGCHC	4 cut(s)	31, 180, 297, 413
Bsp143I	GATC	9 cut(s)	135, 165, 196, 252, 282, 313, 369, 429, 570
BspACI	CCGC	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	30
BspMAI	CTGCAG	1 cut(s)	654
BspPI	GGATC	1 cut(s)	578
BsrDI	GCAATG	1 cut(s)	87
BssMI	GATC	9 cut(s)	135, 165, 196, 252, 282, 313, 369, 429, 570
BssT1I	CCWWGG	1 cut(s)	577
Bst2UI	CCWGG	2 cut(s)	25, 97
BstC8I	GCNNGC	1 cut(s)	654
BstENI	CCTNNNNNAGG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	83, 635
BstKTI	GATC	9 cut(s)	138, 168, 199, 255, 285, 316, 372, 432, 573
BstMBI	GATC	9 cut(s)	135, 165, 196, 252, 282, 313, 369, 429, 570
BstMCI	CGRYCG	3 cut(s)	138, 255, 372
BstNI	CCWGG	2 cut(s)	25, 97
BstSCI	CCNGG	2 cut(s)	23, 95
BstSFI	CTRYAG	1 cut(s)	650
BstV1I	GCAGC	1 cut(s)	636
BstV2I	GAAGAC	1 cut(s)	473
BtsCI	GGATG	2 cut(s)	83, 635
Cac8I	GCNNGC	1 cut(s)	654
CaiI	CAGNNNCTG	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	633
CviQI	GTAC	1 cut(s)	633
DpnI	GATC	9 cut(s)	137, 167, 198, 254, 284, 315, 371, 431, 572
DpnII	GATC	9 cut(s)	135, 165, 196, 252, 282, 313, 369, 429, 570
Eco130I	CCWWGG	1 cut(s)	577
Eco147I	AGGCCT	1 cut(s)	100
Eco24I	GRGCYC	4 cut(s)	31, 180, 297, 413
EcoNI	CCTNNNNNAGG	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	23, 95
EcoT14I	CCWWGG	1 cut(s)	577
EcoT38I	GRGCYC	4 cut(s)	31, 180, 297, 413
ErhI	CCWWGG	1 cut(s)	577
Esp3I	CGTCTC	4 cut(s)	111, 228, 345, 461
FaiI	YATR	1 cut(s)	642
FblI	GTMKAC	1 cut(s)	401
Fnu4HI	GCNGC	2 cut(s)	66, 650
FokI	GGATG	2 cut(s)	70, 642
FriOI	GRGCYC	4 cut(s)	31, 180, 297, 413
Fsp4HI	GCNGC	2 cut(s)	66, 650
GluI	GCNGC	2 cut(s)	66, 650
GsuI	CTGGAG	1 cut(s)	79
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HinfI	GANTC	5 cut(s)	201, 318, 434, 514, 659
Hpy166II	GTNNAC	2 cut(s)	402, 671
Hpy188I	TCNGA	9 cut(s)	135, 165, 196, 252, 282, 313, 369, 429, 610
Hpy188III	TCNNGA	5 cut(s)	114, 231, 348, 464, 528
Hpy8I	GTNNAC	2 cut(s)	402, 671
HpyAV	CCTTC	1 cut(s)	519
HpyCH4V	TGCA	4 cut(s)	11, 35, 644, 652
Kzo9I	GATC	9 cut(s)	135, 165, 196, 252, 282, 313, 369, 429, 570
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	9 cut(s)	10, 37, 45, 82, 109, 517, 611, 630, 638
Lsp1109I	GCAGC	1 cut(s)	636
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	9 cut(s)	137, 167, 198, 254, 284, 315, 371, 431, 572
MboI	GATC	9 cut(s)	135, 165, 196, 252, 282, 313, 369, 429, 570
MboII	GAAGA	1 cut(s)	473
MhlI	GDGCHC	4 cut(s)	31, 180, 297, 413
MluCI	AATT	1 cut(s)	637
MlyI	GAGTC	4 cut(s)	195, 312, 428, 508
MmeI	TCCRAC	1 cut(s)	99
MseI	TTAA	1 cut(s)	617
MspA1I	CMGCKG	1 cut(s)	68
MspR9I	CCNGG	2 cut(s)	25, 97
MvaI	CCWGG	2 cut(s)	25, 97
NdeII	GATC	9 cut(s)	135, 165, 196, 252, 282, 313, 369, 429, 570
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	56
PceI	AGGCCT	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	659
PflFI	GACNNNGTC	2 cut(s)	517, 534
PkrI	GCNGC	2 cut(s)	67, 651
Ple19I	CGATCG	3 cut(s)	138, 255, 372
PleI	GAGTC	4 cut(s)	195, 312, 428, 508
PpsI	GAGTC	4 cut(s)	195, 312, 428, 508
Psp6I	CCWGG	2 cut(s)	23, 95
PspGI	CCWGG	2 cut(s)	23, 95
PspN4I	GGNNCC	1 cut(s)	30
PstI	CTGCAG	1 cut(s)	654
PstNI	CAGNNNCTG	1 cut(s)	68
PsyI	GACNNNGTC	2 cut(s)	517, 534
PvuI	CGATCG	3 cut(s)	138, 255, 372
RsaI	GTAC	1 cut(s)	634
RsaNI	GTAC	1 cut(s)	633
SalI	GTCGAC	1 cut(s)	400
SaqAI	TTAA	1 cut(s)	617
SatI	GCNGC	2 cut(s)	66, 650
Sau3AI	GATC	9 cut(s)	135, 165, 196, 252, 282, 313, 369, 429, 570
SchI	GAGTC	4 cut(s)	195, 312, 428, 508
ScrFI	CCNGG	2 cut(s)	25, 97
SduI	GDGCHC	4 cut(s)	31, 180, 297, 413
SetI	ASST	5 cut(s)	26, 43, 58, 615, 676
SfcI	CTRYAG	1 cut(s)	650
Sse9I	AATT	1 cut(s)	637
SseBI	AGGCCT	1 cut(s)	100
SsiI	CCGC	1 cut(s)	66
StuI	AGGCCT	1 cut(s)	100
StyD4I	CCNGG	2 cut(s)	23, 95
StyI	CCWWGG	1 cut(s)	577
TasI	AATT	1 cut(s)	637
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	659
Tru1I	TTAA	1 cut(s)	617
Tru9I	TTAA	1 cut(s)	617
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	649
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	63
TspGWI	ACGGA	4 cut(s)	93, 210, 327, 443
Tth111I	GACNNNGTC	2 cut(s)	517, 534
XagI	CCTNNNNNAGG	1 cut(s)	36
XmiI	GTMKAC	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.