Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0003069

Physical Location & Seq

Genomic Coordinates Forward (+)

3245469 .. 3246765

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g05060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCACAATCACTCACCTTTAAATTTAATATTAAGACAACTTGTGGACAAAAAAATTATTTCTCTTCAGGGGCTGAGGTACCAAGAAAGCCGACAAGGAAGATTGCATTGGCTTGAAGCAGTATCACTTGGCAATGGTGAATCTTCCAAAGAAAGTGAAGGTTCTCATCATCTGAATATAGATTCCTTACAGAACCTTTCTAAGCAGTTTGTGAACCGAGCTGATTTGAGAAATGGCCGTTCTCAAGGTCTTATTCCAGATTCCTCTTCATTAGTGCATGGCCATGATGCTGAAAATGGCTACTCTGCTAGAATTGCGTTTGATAAGAGTGATATGGTTCACGATCCTGTGTCATGTTCGTGTAGAGAGCAACTGATTGCAGACGGTCTGGTTCTAGACAAGGGATTATCAAACGAGAATTCTGGTTCAAGACACCAAATAGATTTAAATAGATATTTGGAGGCACCGATAGTAGTTGAAACAGATACATATGGGGAAGATTCCATTGAAAGAAGACGTAAGGATTCACCTCATGAGGGCCTTATCAGAGCAGCAGCTGAGGCTCTAGCTTGGCAAACCGACTCCCTTCGTTGGTTTGCAAAAATAATTTCTTCATGTGATGGAAGTCTTGACAATGGAGGTGCGGCAGAGGTTAAGCGAACTGCCAGTGAAGAGTCATTTCCCAATGTGACGGATTACTTTGGGCACATGACATTAAATTTGGTGGAAACCAAGGAAGAGCGGCCCTGCAGACTTCCAGAGAAATGTACTTCCCGGTCTTGTTTCTTTGGGTTGATTATGGAATCTGGTGGGAGTTGGCTGTCAAGTTTGTCACAAAGAAATTCCGGTGAGGGTGGTAGGGGAAGGGGGAGGAAGCGTATGGGAACTTCTGCTCCGTCTACTACTGTGGCTGAAGTTAAGCAGCCCCAGATAGATCAACCGAAATGCATGGAGCTGCAGGGACCTGAGGAGAGAAATCTTACCTGTTGGGGTAAGAGGACAAGGCGTCCACCACGGCAAAGATATACGATTGATAATTCTCCTATTCCTCTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF863

Protein Analysis

353

Amino Acids

39.28

Weight (kDa)

6.84

Isoelectric Point (pI)

62.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF863	PF05904	192 - 247	2.6e-07	Plant protein of unknown function (DUF863)
DUF863	PF05904	262 - 342	2.1e-14	Plant protein of unknown function (DUF863)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003069)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47740 FvH4_6g47740 FvH4_6g47740 FvH4_6g47740
malus_domestica	MD09G1059300.v1.1 MD17G1054900.v1.1
prunus_persica	Prupe.3G261200_v2.0.a1
pyrus_communis	pycom08g18570 pycom111g05020 pycom111g05040 pycom111g05060 pycom17g05270 pycom17g05290
rosa_chinensis	RchiOBHm_Chr2g0166861 RchiOBHm_Chr4g0401141 RchiOBHm_Chr5g0037041 RchiOBHm_Chr7g0237831
rosa_laevigata	RLG00000021662 RLG00000021675
rosa_multiflora	Rmu_sc0005344.1_g000006
rosa_roxburghii	Rroxscaffold_2G00084060 Rroxscaffold_2G00084090 Rroxscaffold_2G00084470 Rroxscaffold_4G00327630
rosa_rugosa	Rorug02G0525900 Rorug02G0526000
rosa_samantha	Rh2AG592900 Rh2BG604100 Rh2BG604300 Rh2CG575000 Rh2CG575200 Rh2DG615600 Rh2DG615800 Rh3DG312900 Rh4DG186200 Rh5DG059300 Rh5DG383900
rosa_wichuraiana	Rw2G049350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	78
AccB1I	GGYRCC	2 cut(s)	78, 463
AccBSI	CCGCTC	1 cut(s)	742
AccI	GTMKAC	1 cut(s)	899
AciI	CCGC	2 cut(s)	644, 742
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	2 cut(s)	235, 280
AcsI	RAATTY	4 cut(s)	22, 418, 718, 841
AcuI	CTGAAG	2 cut(s)	50, 933
AcyI	GRCGYC	1 cut(s)	1006
AfaI	GTAC	2 cut(s)	80, 769
AfiI	CCNNNNNNNGG	2 cut(s)	536, 591
AgsI	TTSAA	4 cut(s)	116, 429, 479, 509
AhdI	GACNNNNNGTC	1 cut(s)	1005
AjuI	GAANNNNNNNTTGG	2 cut(s)	91, 123
AloI	GAACNNNNNNTCC	2 cut(s)	877, 909
AluBI	AGCT	4 cut(s)	221, 557, 569, 955
AluI	AGCT	4 cut(s)	221, 557, 569, 955
AlwI	GGATC	1 cut(s)	338
AlwNI	CAGNNNCTG	2 cut(s)	73, 557
AoxI	GGCC	4 cut(s)	235, 280, 538, 743
ApeKI	GCWGC	4 cut(s)	551, 554, 922, 955
ApoI	RAATTY	4 cut(s)	22, 418, 718, 841
ArsI	GACNNNNNNTTYG	2 cut(s)	703, 735
Asp718I	GGTACC	1 cut(s)	78
AspS9I	GGNCC	3 cut(s)	538, 744, 962
AsuC2I	CCSGG	1 cut(s)	775
AsuHPI	GGTGA	4 cut(s)	6, 149, 519, 860
AvaII	GGWCC	1 cut(s)	962
AxyI	CCTNAGG	1 cut(s)	966
BaeGI	GKGCMC	1 cut(s)	708
BalI	TGGCCA	1 cut(s)	282
BanI	GGYRCC	2 cut(s)	78, 463
BarI	GAAGNNNNNNTAC	2 cut(s)	871, 903
BbsI	GAAGAC	1 cut(s)	520
BbvCI	CCTCAGC	2 cut(s)	74, 558
BbvI	GCAGC	4 cut(s)	563, 566, 934, 942
BccI	CCATC	1 cut(s)	614
BceAI	ACGGC	2 cut(s)	222, 1031
BcnI	CCSGG	1 cut(s)	775
BfaI	CTAG	3 cut(s)	309, 395, 566
BfmI	CTRYAG	2 cut(s)	748, 956
BisI	GCNGC	6 cut(s)	552, 555, 645, 743, 923, 956
BlsI	GCNGC	6 cut(s)	553, 556, 646, 744, 924, 957
Bme1390I	CCNGG	1 cut(s)	775
Bme18I	GGWCC	1 cut(s)	962
BmeRI	GACNNNNNGTC	1 cut(s)	1005
BmgT120I	GGNCC	3 cut(s)	538, 744, 962
BmiI	GGNNCC	3 cut(s)	80, 465, 963
BmrFI	CCNGG	1 cut(s)	775
BmsI	GCATC	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	520
Bpu10I	CCTNAGC	2 cut(s)	74, 558
BpuEI	CTTGAG	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	775
BsaHI	GRCGYC	1 cut(s)	1006
BsaJI	CCNNGG	2 cut(s)	732, 1013
BsaWI	WCCGGW	1 cut(s)	845
BsaXI	ACNNNNNCTCC	4 cut(s)	862, 877, 892, 907
Bsc4I	CCNNNNNNNGG	2 cut(s)	536, 591
Bse1I	ACTGG	1 cut(s)	666
Bse21I	CCTNAGG	1 cut(s)	966
Bse3DI	GCAATG	1 cut(s)	139
BseDI	CCNNGG	2 cut(s)	732, 1013
BseLI	CCNNNNNNNGG	2 cut(s)	536, 591
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	3 cut(s)	65, 549, 957
BseNI	ACTGG	1 cut(s)	666
BseRI	GAGGAG	1 cut(s)	983
BseSI	GKGCMC	1 cut(s)	708
BseXI	GCAGC	4 cut(s)	563, 566, 934, 942
BshFI	GGCC	4 cut(s)	237, 282, 540, 745
BshNI	GGYRCC	2 cut(s)	78, 463
BsiSI	CCGG	2 cut(s)	775, 846
BslFI	GGGAC	1 cut(s)	975
BslI	CCNNNNNNNGG	2 cut(s)	536, 591
BsmFI	GGGAC	1 cut(s)	975
BsnI	GGCC	4 cut(s)	237, 282, 540, 745
Bsp1286I	GDGCHC	1 cut(s)	708
Bsp143I	GATC	2 cut(s)	343, 934
BspACI	CCGC	2 cut(s)	644, 742
BspANI	GGCC	4 cut(s)	237, 282, 540, 745
BspCNI	CTCAG	3 cut(s)	66, 550, 958
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	3 cut(s)	80, 465, 963
BspMAI	CTGCAG	2 cut(s)	752, 960
BspPI	GGATC	1 cut(s)	338
BspQI	GCTCTTC	1 cut(s)	732
BspT107I	GGYRCC	2 cut(s)	78, 463
BsrBI	CCGCTC	1 cut(s)	742
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	666
BssECI	CCNNGG	2 cut(s)	732, 1013
BssMI	GATC	2 cut(s)	343, 934
BssNI	GRCGYC	1 cut(s)	1006
BssT1I	CCWWGG	1 cut(s)	732
Bst4CI	ACNGT	2 cut(s)	386, 907
Bst6I	CTCTTC	4 cut(s)	69, 271, 666, 732
BstACI	GRCGYC	1 cut(s)	1006
BstDEI	CTNAG	4 cut(s)	74, 201, 558, 966
BstDSI	CCRYGG	1 cut(s)	1013
BstKTI	GATC	2 cut(s)	346, 937
BstMBI	GATC	2 cut(s)	343, 934
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 560
BstSCI	CCNGG	1 cut(s)	773
BstSFI	CTRYAG	2 cut(s)	748, 956
BstSLI	GKGCMC	1 cut(s)	708
BstV1I	GCAGC	4 cut(s)	563, 566, 934, 942
BstV2I	GAAGAC	1 cut(s)	520
Bsu36I	CCTNAGG	1 cut(s)	966
BsuRI	GGCC	4 cut(s)	237, 282, 540, 745
BtgI	CCRYGG	1 cut(s)	1013
BtsIMutI	CAGTG	1 cut(s)	673
CaiI	CAGNNNCTG	2 cut(s)	73, 557
CciI	TCATGA	1 cut(s)	532
Cfr13I	GGNCC	3 cut(s)	538, 744, 962
CseI	GACGC	1 cut(s)	995
Csp6I	GTAC	2 cut(s)	79, 768
CviAII	CATG	7 cut(s)	278, 284, 354, 533, 615, 709, 949
CviQI	GTAC	2 cut(s)	79, 768
DdeI	CTNAG	4 cut(s)	74, 201, 558, 966
DpnI	GATC	2 cut(s)	345, 936
DpnII	GATC	2 cut(s)	343, 934
DraI	TTTAAA	2 cut(s)	21, 447
DriI	GACNNNNNGTC	1 cut(s)	1005
EaeI	YGGCCR	2 cut(s)	235, 280
Eam1104I	CTCTTC	4 cut(s)	69, 271, 666, 732
Eam1105I	GACNNNNNGTC	1 cut(s)	1005
EarI	CTCTTC	4 cut(s)	69, 271, 666, 732
Eco130I	CCWWGG	1 cut(s)	732
Eco47I	GGWCC	1 cut(s)	962
Eco57I	CTGAAG	2 cut(s)	50, 933
Eco81I	CCTNAGG	1 cut(s)	966
EcoO109I	RGGNCCY	2 cut(s)	538, 962
EcoRI	GAATTC	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	732
EcoT22I	ATGCAT	1 cut(s)	950
ErhI	CCWWGG	1 cut(s)	732
FaeI	CATG	7 cut(s)	281, 287, 357, 536, 618, 712, 952
FaqI	GGGAC	1 cut(s)	975
FatI	CATG	7 cut(s)	277, 283, 353, 532, 614, 708, 948
FauNDI	CATATG	1 cut(s)	490
FblI	GTMKAC	1 cut(s)	899
Fnu4HI	GCNGC	6 cut(s)	552, 555, 645, 743, 923, 956
Fsp4HI	GCNGC	6 cut(s)	552, 555, 645, 743, 923, 956
FspBI	CTAG	3 cut(s)	309, 395, 566
GluI	GCNGC	6 cut(s)	552, 555, 645, 743, 923, 956
HaeIII	GGCC	4 cut(s)	237, 282, 540, 745
HapII	CCGG	2 cut(s)	775, 846
HgaI	GACGC	1 cut(s)	995
Hin1I	GRCGYC	1 cut(s)	1006
Hin1II	CATG	7 cut(s)	281, 287, 357, 536, 618, 712, 952
HinfI	GANTC	8 cut(s)	140, 182, 260, 500, 524, 581, 674, 803
HpaII	CCGG	2 cut(s)	775, 846
HphI	GGTGA	4 cut(s)	6, 149, 519, 860
Hpy166II	GTNNAC	5 cut(s)	46, 214, 340, 900, 1010
Hpy188I	TCNGA	2 cut(s)	174, 548
Hpy188III	TCNNGA	7 cut(s)	257, 341, 395, 429, 533, 629, 758
Hpy8I	GTNNAC	5 cut(s)	46, 214, 340, 900, 1010
HpyAV	CCTTC	3 cut(s)	152, 596, 858
HpyCH4III	ACNGT	2 cut(s)	386, 907
HpyCH4IV	ACGT	1 cut(s)	517
HpyCH4V	TGCA	8 cut(s)	4, 106, 277, 380, 599, 750, 948, 958
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 560
HpyF3I	CTNAG	4 cut(s)	74, 201, 558, 966
HpySE526I	ACGT	1 cut(s)	517
Hsp92I	GRCGYC	1 cut(s)	1006
Hsp92II	CATG	7 cut(s)	281, 287, 357, 536, 618, 712, 952
KpnI	GGTACC	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	343, 934
LguI	GCTCTTC	1 cut(s)	732
LmnI	GCTCC	2 cut(s)	898, 952
Lsp1109I	GCAGC	4 cut(s)	563, 566, 934, 942
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	3 cut(s)	309, 395, 566
MaeII	ACGT	1 cut(s)	517
MaeIII	GTNAC	2 cut(s)	688, 831
MalI	GATC	2 cut(s)	345, 936
MbiI	CCGCTC	1 cut(s)	742
MboI	GATC	2 cut(s)	343, 934
MboII	GAAGA	9 cut(s)	56, 111, 135, 258, 509, 525, 603, 683, 749
MhlI	GDGCHC	1 cut(s)	708
MlsI	TGGCCA	1 cut(s)	282
MluCI	AATT	8 cut(s)	22, 54, 312, 418, 606, 718, 841, 1036
MluNI	TGGCCA	1 cut(s)	282
MlyI	GAGTC	2 cut(s)	575, 683
Mox20I	TGGCCA	1 cut(s)	282
Mph1103I	ATGCAT	1 cut(s)	950
MscI	TGGCCA	1 cut(s)	282
MseI	TTAA	7 cut(s)	20, 26, 32, 446, 654, 716, 918
MslI	CAYNNNNRTG	2 cut(s)	282, 358
Msp20I	TGGCCA	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	2 cut(s)	775, 846
MspR9I	CCNGG	1 cut(s)	775
MwoI	GCNNNNNNNGC	2 cut(s)	314, 560
NciI	CCSGG	1 cut(s)	775
NdeI	CATATG	1 cut(s)	490
NdeII	GATC	2 cut(s)	343, 934
NlaIII	CATG	7 cut(s)	281, 287, 357, 536, 618, 712, 952
NlaIV	GGNNCC	3 cut(s)	80, 465, 963
NmuCI	GTSAC	2 cut(s)	688, 831
NsiI	ATGCAT	1 cut(s)	950
PagI	TCATGA	1 cut(s)	532
PciSI	GCTCTTC	1 cut(s)	732
PfeI	GAWTC	6 cut(s)	140, 182, 260, 500, 524, 803
PkrI	GCNGC	6 cut(s)	553, 556, 646, 744, 924, 957
PleI	GAGTC	2 cut(s)	575, 682
PpsI	GAGTC	2 cut(s)	575, 682
PpuMI	RGGWCCY	1 cut(s)	962
Psp5II	RGGWCCY	1 cut(s)	962
PspN4I	GGNNCC	3 cut(s)	80, 465, 963
PspPI	GGNCC	3 cut(s)	538, 744, 962
PspPPI	RGGWCCY	1 cut(s)	962
PstI	CTGCAG	2 cut(s)	752, 960
PstNI	CAGNNNCTG	2 cut(s)	73, 557
PvuII	CAGCTG	1 cut(s)	557
RsaI	GTAC	2 cut(s)	80, 769
RsaNI	GTAC	2 cut(s)	79, 768
RseI	CAYNNNNRTG	2 cut(s)	282, 358
SapI	GCTCTTC	1 cut(s)	732
SaqAI	TTAA	7 cut(s)	20, 26, 32, 446, 654, 716, 918
SatI	GCNGC	6 cut(s)	552, 555, 645, 743, 923, 956
Sau3AI	GATC	2 cut(s)	343, 934
Sau96I	GGNCC	3 cut(s)	538, 744, 962
SchI	GAGTC	2 cut(s)	575, 683
ScrFI	CCNGG	1 cut(s)	775
SduI	GDGCHC	1 cut(s)	708
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	2 cut(s)	748, 956
SinI	GGWCC	1 cut(s)	962
SmiI	ATTTAAAT	1 cut(s)	447
SmiMI	CAYNNNNRTG	2 cut(s)	282, 358
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	8 cut(s)	22, 54, 312, 418, 606, 718, 841, 1036
SsiI	CCGC	2 cut(s)	644, 742
SspI	AATATT	1 cut(s)	30
SspMI	CTAG	3 cut(s)	309, 395, 566
StyD4I	CCNGG	1 cut(s)	773
StyI	CCWWGG	1 cut(s)	732
SwaI	ATTTAAAT	1 cut(s)	447
TaaI	ACNGT	2 cut(s)	386, 907
TaiI	ACGT	1 cut(s)	520
TasI	AATT	8 cut(s)	22, 54, 312, 418, 606, 718, 841, 1036
TatI	WGTACW	1 cut(s)	767
TauI	GCSGC	2 cut(s)	647, 745
TfiI	GAWTC	6 cut(s)	140, 182, 260, 500, 524, 803
Tru1I	TTAA	7 cut(s)	20, 26, 32, 446, 654, 716, 918
Tru9I	TTAA	7 cut(s)	20, 26, 32, 446, 654, 716, 918
TscAI	CASTG	1 cut(s)	673
TseFI	GTSAC	2 cut(s)	688, 831
TseI	GCWGC	4 cut(s)	551, 554, 922, 955
Tsp45I	GTSAC	2 cut(s)	688, 831
TspDTI	ATGAA	2 cut(s)	258, 603
TspGWI	ACGGA	2 cut(s)	707, 885
TspRI	CASTG	1 cut(s)	673
VpaK11BI	GGWCC	1 cut(s)	962
XapI	RAATTY	4 cut(s)	22, 418, 718, 841
XbaI	TCTAGA	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	899
XspI	CTAG	3 cut(s)	309, 395, 566
Zsp2I	ATGCAT	1 cut(s)	950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.