Rh2BG604100

Plant protein of unknown function (DUF863)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003069
Physical Location & Seq
Reverse (-)
82602127 .. 82602486
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG604100.1

Sequence Viewer

Length: 360 bp
ATGCAGGAAAATGCTGCACATGTTCTTGATCAAGAAATTTCTACTTGTCGTGAAGATGATGCAACAGTAATTGACAACTCCCTTCTTTGGTTTGCAGAAATAGTTTCTTCAAACGAAGAAAATCTTGAACAGACAGATAATGTGGTAAAATTTAAGGGAGCGATGGATTACTTTGAGTACATGACATTAAATGTGGCGGAAACCAAGTTAGAGCAGTGCTGCAATGTGCCTTCAGACAACCCAAAAGAAGAAGTGCCGCACGCTGTCAAAACGGCCACAAAGGGGCAATACGAGGAGATGGAGGGGACTTCCAGAGGGATGTTCTCCCTGGTATTGCTTGTTTGTCACGAAATGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF863

Protein Analysis

119

Amino Acids

13.51

Weight (kDa)

4.37

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF863 PF05904 17 - 76 5.3e-09 Plant protein of unknown function (DUF863)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 197, 257
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 2 cut(s) 36, 149
AcuI CTGAAG 1 cut(s) 216
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 2 cut(s) 87, 282
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 2 cut(s) 111, 128
AjnI CCWGG 1 cut(s) 327
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 2 cut(s) 14, 219
ApoI RAATTY 2 cut(s) 36, 149
BbvI GCAGC 1 cut(s) 206
BccI CCATC 2 cut(s) 157, 292
BceAI ACGGC 1 cut(s) 288
BciT130I CCWGG 1 cut(s) 329
BclI TGATCA 1 cut(s) 28
BisI GCNGC 3 cut(s) 15, 220, 257
BlsI GCNGC 3 cut(s) 16, 221, 258
Bme1390I CCNGG 1 cut(s) 329
BmrFI CCNGG 1 cut(s) 329
BmsI GCATC 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 327
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 282
Bse3DI GCAATG 1 cut(s) 229
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 1 cut(s) 324
BseLI CCNNNNNNNGG 2 cut(s) 87, 282
BseMI GCAATG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 1 cut(s) 206
BshFI GGCC 1 cut(s) 275
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 2 cut(s) 87, 282
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 1 cut(s) 275
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 2 cut(s) 197, 257
BspANI GGCC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 1 cut(s) 28
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 261
BstF5I GGATG 1 cut(s) 324
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstNI CCWGG 1 cut(s) 329
BstNSI RCATGY 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 327
BstV1I GCAGC 1 cut(s) 206
BsuRI GGCC 1 cut(s) 275
BtgZI GCGATG 1 cut(s) 176
BtsCI GGATG 1 cut(s) 324
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 178
CviAII CATG 2 cut(s) 20, 181
CviJI RGCY 1 cut(s) 275
CviKI_1 RGCY 1 cut(s) 275
CviQI GTAC 1 cut(s) 178
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 273
EciI GGCGGA 1 cut(s) 212
Eco57I CTGAAG 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 327
FaeI CATG 2 cut(s) 23, 184
FaiI YATR 2 cut(s) 21, 182
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FaqI GGGAC 1 cut(s) 319
FatI CATG 2 cut(s) 19, 180
FbaI TGATCA 1 cut(s) 28
Fnu4HI GCNGC 3 cut(s) 15, 220, 257
FokI GGATG 1 cut(s) 331
Fsp4HI GCNGC 3 cut(s) 15, 220, 257
GluI GCNGC 3 cut(s) 15, 220, 257
HaeIII GGCC 1 cut(s) 275
Hin1II CATG 2 cut(s) 23, 184
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 6 cut(s) 26, 32, 50, 125, 312, 347
HpyAV CCTTC 2 cut(s) 92, 240
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 5 cut(s) 4, 17, 62, 95, 222
Hsp92II CATG 2 cut(s) 23, 184
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 1 cut(s) 28
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 3 cut(s) 314, 325, 341
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 1 cut(s) 49
MaeIII GTNAC 1 cut(s) 344
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 4 cut(s) 65, 99, 128, 260
MluCI AATT 3 cut(s) 36, 69, 149
MnlI CCTC 4 cut(s) 286, 295, 308, 348
MseI TTAA 2 cut(s) 153, 188
MspR9I CCNGG 1 cut(s) 329
MvaI CCWGG 1 cut(s) 329
NdeII GATC 1 cut(s) 28
NlaIII CATG 2 cut(s) 23, 184
NmuCI GTSAC 1 cut(s) 344
NspI RCATGY 1 cut(s) 23
PciI ACATGT 1 cut(s) 19
PkrI GCNGC 3 cut(s) 16, 221, 258
PscI ACATGT 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 327
PspGI CCWGG 1 cut(s) 327
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SaqAI TTAA 2 cut(s) 153, 188
SatI GCNGC 3 cut(s) 15, 220, 257
Sau3AI GATC 1 cut(s) 28
ScrFI CCNGG 1 cut(s) 329
SetI ASST 1 cut(s) 359
SfaNI GCATC 1 cut(s) 49
Sse9I AATT 3 cut(s) 36, 69, 149
SsiI CCGC 2 cut(s) 197, 257
StyD4I CCNGG 1 cut(s) 327
TaaI ACNGT 1 cut(s) 67
TasI AATT 3 cut(s) 36, 69, 149
TatI WGTACW 1 cut(s) 177
TauI GCSGC 1 cut(s) 259
Tru1I TTAA 2 cut(s) 153, 188
Tru9I TTAA 2 cut(s) 153, 188
TscAI CASTG 1 cut(s) 221
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 2 cut(s) 14, 219
Tsp45I GTSAC 1 cut(s) 344
TspRI CASTG 1 cut(s) 221
XapI RAATTY 2 cut(s) 36, 149
XceI RCATGY 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.