Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0003069

Physical Location & Seq

Genomic Coordinates Forward (+)

3206697 .. 3207986

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g05040.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGGTGTAATTCAATACCATCAACTCCCAGTCTTAAAGATCAAGTGTCACACCAAAGCGGTTTTTTTTTTTCGTGCGAAGTTGGAGGCCAATGAAGTACAGGCTTGTCACCCCTCAATGAGCCTTGTCCGCCAGGGGAACCATTCAAGTTTAGGTCACCGGGTGTATGTGTCTGCAATTGATGTCAACGATGTTCCTCCGAATGAATATCTGCATGGAGTAACTTGTGGACAAAATATTATTTCTCTTCAGGGGCTGAGGTACCAAGAAAGCCGACAAGGAAGATTGCATTGGCTTGAAGCAGTGTCACTTTGCAACGGTGAATCTTCCAAAGAAGGTGAAGATTTGGAGGCACCGGTTGTAGTTGAAACAGATATATATGGGGAAGATTCCATTGAAAGAAGACGTGAGGACTCACCTCATGAGGGCCTTATCAAAGCAGCAGCTGAGGCTCCAGCTGCCATCTCATCATCTCAAACTCACGATATGCAGGACGATGCCACTGGTCGCAAAATGGATACTTTGCAAACCGACTCCCTTCGTTGGTTTGCAGAAATAATTTCTTCATGTGACGGAAGTCTTGACAATGGAAGTGCGGCAGAGGTTAAGCGAACTGCAGGTGAAGAGTCCTTTCCCGATGTGACGGATTACTTTGAGCACATGACATTAAATTTGGTGGAAACCAAGGAAGACCGGCCCTGCTATGTGCCTCCAAATTCAGACAACCTAATAGAAGAAGTGACATTGTCAAAAAGGCCACGAAGAGGTCAATCAAGGAGAGGGAGGCAGCAGAAAGACTTCCAGAGAGATGTACTTCCCAGTCTTGTTTCTTTGTCAAGAAATGAGGTGACTGATGATCTTCAAATAATTGAAGGGTTGATTATGGAATCTGGTGGGAGTTGGCTGTCAAGTTTGTCACAAAGAAATTCCGGTAAGGGTGGTAGGGGAAGGGGGAGGAAGCGTGTGGGAACTTCTGCTCCGTCTACTACTGTGGCTGAAGTTAACCAGCCCCAGATAGAGCAACCGAAATGCGTGGAGCTGCAGGGACCTGAGGAGAGAAATCTAACCTGTTGGGGTAAGAGGACAAGGCGTCCACCACGGCAAAGATATCCGATTGATAATTCTCCTATTCCCCTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF863

Protein Analysis

381

Amino Acids

42.43

Weight (kDa)

5.88

Isoelectric Point (pI)

65.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003069)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47740 FvH4_6g47740 FvH4_6g47740 FvH4_6g47740
malus_domestica	MD09G1059300.v1.1 MD17G1054900.v1.1
prunus_persica	Prupe.3G261200_v2.0.a1
pyrus_communis	pycom08g18570 pycom111g05020 pycom111g05040 pycom111g05060 pycom17g05270 pycom17g05290
rosa_chinensis	RchiOBHm_Chr2g0166861 RchiOBHm_Chr4g0401141 RchiOBHm_Chr5g0037041 RchiOBHm_Chr7g0237831
rosa_laevigata	RLG00000021662 RLG00000021675
rosa_multiflora	Rmu_sc0005344.1_g000006
rosa_roxburghii	Rroxscaffold_2G00084060 Rroxscaffold_2G00084090 Rroxscaffold_2G00084470 Rroxscaffold_4G00327630
rosa_rugosa	Rorug02G0525900 Rorug02G0526000
rosa_samantha	Rh2AG592900 Rh2BG604100 Rh2BG604300 Rh2CG575000 Rh2CG575200 Rh2DG615600 Rh2DG615800 Rh3DG312900 Rh4DG186200 Rh5DG059300 Rh5DG383900
rosa_wichuraiana	Rw2G049350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	608
Acc36I	ACCTGC	1 cut(s)	608
Acc65I	GGTACC	1 cut(s)	261
AccB1I	GGYRCC	2 cut(s)	261, 352
AccI	GTMKAC	1 cut(s)	983
AciI	CCGC	3 cut(s)	59, 130, 596
AcsI	RAATTY	3 cut(s)	670, 715, 925
AcuI	CTGAAG	2 cut(s)	233, 1017
AcyI	GRCGYC	1 cut(s)	1090
AdeI	CACNNNGTG	1 cut(s)	163
AfaI	GTAC	3 cut(s)	99, 263, 813
AfiI	CCNNNNNNNGG	3 cut(s)	425, 543, 764
AgeI	ACCGGT	1 cut(s)	355
AgsI	TTSAA	7 cut(s)	14, 147, 299, 368, 398, 863, 872
AhdI	GACNNNNNGTC	1 cut(s)	1089
AjiI	CACGTC	1 cut(s)	407
AjnI	CCWGG	1 cut(s)	132
AjuI	GAANNNNNNNTTGG	2 cut(s)	274, 306
AloI	GAACNNNNNNTCC	2 cut(s)	961, 993
AluBI	AGCT	3 cut(s)	446, 458, 1039
AluI	AGCT	3 cut(s)	446, 458, 1039
Alw21I	GWGCWC	1 cut(s)	660
AlwNI	CAGNNNCTG	2 cut(s)	256, 446
AoxI	GGCC	4 cut(s)	87, 427, 695, 755
ApeKI	GCWGC	5 cut(s)	440, 443, 458, 787, 1039
ApoI	RAATTY	3 cut(s)	670, 715, 925
ArsI	GACNNNNNNTTYG	2 cut(s)	655, 687
AsiGI	ACCGGT	1 cut(s)	355
Asp700I	GAANNNNTTC	1 cut(s)	797
Asp718I	GGTACC	1 cut(s)	261
AspS9I	GGNCC	3 cut(s)	427, 696, 1046
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	7 cut(s)	101, 149, 332, 350, 408, 632, 859
AvaII	GGWCC	1 cut(s)	1046
AxyI	CCTNAGG	1 cut(s)	1050
BanI	GGYRCC	2 cut(s)	261, 352
BbsI	GAAGAC	2 cut(s)	409, 696
Bbv12I	GWGCWC	1 cut(s)	660
BbvCI	CCTCAGC	2 cut(s)	257, 447
BbvI	GCAGC	5 cut(s)	445, 452, 455, 799, 1026
BccI	CCATC	2 cut(s)	27, 470
BceAI	ACGGC	1 cut(s)	1115
BciT130I	CCWGG	1 cut(s)	134
BciVI	GTATCC	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	161
BfmI	CTRYAG	2 cut(s)	615, 1040
BfuAI	ACCTGC	1 cut(s)	608
BfuI	GTATCC	1 cut(s)	511
BisI	GCNGC	6 cut(s)	441, 444, 459, 597, 788, 1040
BlsI	GCNGC	6 cut(s)	442, 445, 460, 598, 789, 1041
Bme1390I	CCNGG	2 cut(s)	134, 161
Bme18I	GGWCC	1 cut(s)	1046
BmeRI	GACNNNNNGTC	1 cut(s)	1089
BmgBI	CACGTC	1 cut(s)	407
BmgT120I	GGNCC	3 cut(s)	427, 696, 1046
BmiI	GGNNCC	5 cut(s)	140, 263, 354, 453, 1047
BmrFI	CCNGG	2 cut(s)	134, 161
BmrI	ACTGGG	2 cut(s)	23, 813
BmsI	GCATC	1 cut(s)	487
BmuI	ACTGGG	2 cut(s)	23, 813
BoxI	GACNNNNGTC	1 cut(s)	576
BpiI	GAAGAC	2 cut(s)	409, 696
BpmI	CTGGAG	1 cut(s)	438
Bpu10I	CCTNAGC	2 cut(s)	257, 447
BpuMI	CCSGG	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	1090
BsaJI	CCNNGG	3 cut(s)	133, 684, 1097
BsaWI	WCCGGW	2 cut(s)	355, 929
BsaXI	ACNNNNNCTCC	4 cut(s)	946, 961, 976, 991
Bsc4I	CCNNNNNNNGG	3 cut(s)	425, 543, 764
Bse118I	RCCGGY	2 cut(s)	355, 693
Bse1I	ACTGG	3 cut(s)	29, 508, 819
Bse21I	CCTNAGG	1 cut(s)	1050
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	3 cut(s)	133, 684, 1097
BseLI	CCNNNNNNNGG	3 cut(s)	425, 543, 764
BseMII	CTCAG	3 cut(s)	248, 438, 1041
BseNI	ACTGG	3 cut(s)	29, 508, 819
BseRI	GAGGAG	1 cut(s)	1067
BseXI	GCAGC	5 cut(s)	445, 452, 455, 799, 1026
BshFI	GGCC	4 cut(s)	89, 429, 697, 757
BshNI	GGYRCC	2 cut(s)	261, 352
BshTI	ACCGGT	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	660
BsiSI	CCGG	4 cut(s)	160, 356, 694, 930
BslFI	GGGAC	1 cut(s)	1059
BslI	CCNNNNNNNGG	3 cut(s)	425, 543, 764
BsmFI	GGGAC	1 cut(s)	1059
BsnI	GGCC	4 cut(s)	89, 429, 697, 757
Bsp1286I	GDGCHC	1 cut(s)	660
Bsp143I	GATC	2 cut(s)	39, 856
BspACI	CCGC	3 cut(s)	59, 130, 596
BspANI	GGCC	4 cut(s)	89, 429, 697, 757
BspCNI	CTCAG	3 cut(s)	249, 439, 1042
BspHI	TCATGA	1 cut(s)	421
BspLI	GGNNCC	5 cut(s)	140, 263, 354, 453, 1047
BspMAI	CTGCAG	2 cut(s)	619, 1044
BspMI	ACCTGC	1 cut(s)	608
BspT107I	GGYRCC	2 cut(s)	261, 352
BsrFI	RCCGGY	2 cut(s)	355, 693
BsrI	ACTGG	3 cut(s)	29, 508, 819
BssAI	RCCGGY	2 cut(s)	355, 693
BssECI	CCNNGG	3 cut(s)	133, 684, 1097
BssMI	GATC	2 cut(s)	39, 856
BssNI	GRCGYC	1 cut(s)	1090
BssT1I	CCWWGG	1 cut(s)	684
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	2 cut(s)	320, 991
Bst6I	CTCTTC	3 cut(s)	252, 618, 757
BstACI	GRCGYC	1 cut(s)	1090
BstDEI	CTNAG	3 cut(s)	257, 447, 1050
BstDSI	CCRYGG	1 cut(s)	1097
BstEII	GGTNACC	1 cut(s)	155
BstKTI	GATC	2 cut(s)	42, 859
BstMBI	GATC	2 cut(s)	39, 856
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 449, 458
BstNI	CCWGG	1 cut(s)	134
BstPAI	GACNNNNGTC	1 cut(s)	576
BstPI	GGTNACC	1 cut(s)	155
BstSCI	CCNGG	2 cut(s)	132, 159
BstSFI	CTRYAG	2 cut(s)	615, 1040
BstV1I	GCAGC	5 cut(s)	445, 452, 455, 799, 1026
BstV2I	GAAGAC	2 cut(s)	409, 696
Bsu36I	CCTNAGG	1 cut(s)	1050
BsuI	GTATCC	1 cut(s)	511
BsuRI	GGCC	4 cut(s)	89, 429, 697, 757
BtgI	CCRYGG	1 cut(s)	1097
BtrI	CACGTC	1 cut(s)	407
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	309, 501
BveI	ACCTGC	1 cut(s)	608
CaiI	CAGNNNCTG	2 cut(s)	256, 446
CciI	TCATGA	1 cut(s)	421
Cfr10I	RCCGGY	2 cut(s)	355, 693
Cfr13I	GGNCC	3 cut(s)	427, 696, 1046
CseI	GACGC	1 cut(s)	1079
Csp6I	GTAC	3 cut(s)	98, 262, 812
CspAI	ACCGGT	1 cut(s)	355
CviAII	CATG	4 cut(s)	215, 422, 567, 661
CviQI	GTAC	3 cut(s)	98, 262, 812
DdeI	CTNAG	3 cut(s)	257, 447, 1050
DpnI	GATC	2 cut(s)	41, 858
DpnII	GATC	2 cut(s)	39, 856
DraIII	CACNNNGTG	1 cut(s)	163
DriI	GACNNNNNGTC	1 cut(s)	1089
Eam1104I	CTCTTC	3 cut(s)	252, 618, 757
Eam1105I	GACNNNNNGTC	1 cut(s)	1089
EarI	CTCTTC	3 cut(s)	252, 618, 757
EciI	GGCGGA	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	684
Eco32I	GATATC	1 cut(s)	1109
Eco47I	GGWCC	1 cut(s)	1046
Eco57I	CTGAAG	2 cut(s)	233, 1017
Eco81I	CCTNAGG	1 cut(s)	1050
Eco91I	GGTNACC	1 cut(s)	155
EcoO109I	RGGNCCY	2 cut(s)	427, 1046
EcoO65I	GGTNACC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	132
EcoRV	GATATC	1 cut(s)	1109
EcoT14I	CCWWGG	1 cut(s)	684
ErhI	CCWWGG	1 cut(s)	684
FaeI	CATG	4 cut(s)	218, 425, 570, 664
FaqI	GGGAC	1 cut(s)	1059
FatI	CATG	4 cut(s)	214, 421, 566, 660
FblI	GTMKAC	1 cut(s)	983
Fnu4HI	GCNGC	6 cut(s)	441, 444, 459, 597, 788, 1040
Fsp4HI	GCNGC	6 cut(s)	441, 444, 459, 597, 788, 1040
GluI	GCNGC	6 cut(s)	441, 444, 459, 597, 788, 1040
GsuI	CTGGAG	1 cut(s)	438
HaeIII	GGCC	4 cut(s)	89, 429, 697, 757
HapII	CCGG	4 cut(s)	160, 356, 694, 930
HgaI	GACGC	1 cut(s)	1079
Hin1I	GRCGYC	1 cut(s)	1090
Hin1II	CATG	4 cut(s)	218, 425, 570, 664
HincII	GTYRAC	2 cut(s)	187, 1003
HindII	GTYRAC	2 cut(s)	187, 1003
HinfI	GANTC	6 cut(s)	323, 389, 413, 533, 626, 887
HpaI	GTTAAC	1 cut(s)	1003
HpaII	CCGG	4 cut(s)	160, 356, 694, 930
HphI	GGTGA	7 cut(s)	101, 149, 332, 350, 408, 632, 859
Hpy166II	GTNNAC	5 cut(s)	187, 230, 984, 1003, 1094
Hpy188I	TCNGA	3 cut(s)	201, 721, 1113
Hpy188III	TCNNGA	6 cut(s)	422, 482, 581, 635, 802, 837
Hpy8I	GTNNAC	5 cut(s)	187, 230, 984, 1003, 1094
HpyAV	CCTTC	4 cut(s)	329, 548, 866, 942
HpyCH4III	ACNGT	2 cut(s)	320, 991
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	9 cut(s)	176, 214, 289, 315, 490, 526, 551, 617, 1042
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 449, 458
HpyF3I	CTNAG	3 cut(s)	257, 447, 1050
HpySE526I	ACGT	1 cut(s)	406
Hsp92I	GRCGYC	1 cut(s)	1090
Hsp92II	CATG	4 cut(s)	218, 425, 570, 664
KpnI	GGTACC	1 cut(s)	265
KspAI	GTTAAC	1 cut(s)	1003
Kzo9I	GATC	2 cut(s)	39, 856
LmnI	GCTCC	3 cut(s)	457, 982, 1036
Lsp1109I	GCAGC	5 cut(s)	445, 452, 455, 799, 1026
LweI	GCATC	1 cut(s)	487
MaeII	ACGT	1 cut(s)	406
MalI	GATC	2 cut(s)	41, 858
MboI	GATC	2 cut(s)	39, 856
MfeI	CAATTG	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	660
MluCI	AATT	8 cut(s)	9, 177, 558, 670, 715, 867, 925, 1120
MlyI	GAGTC	3 cut(s)	407, 527, 635
MmeI	TCCRAC	1 cut(s)	63
MroXI	GAANNNNTTC	1 cut(s)	797
MseI	TTAA	4 cut(s)	35, 606, 668, 1002
MspA1I	CMGCKG	2 cut(s)	446, 458
MspI	CCGG	4 cut(s)	160, 356, 694, 930
MspR9I	CCNGG	2 cut(s)	134, 161
MunI	CAATTG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	3 cut(s)	129, 449, 458
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	2 cut(s)	39, 856
NlaIII	CATG	4 cut(s)	218, 425, 570, 664
NlaIV	GGNNCC	5 cut(s)	140, 263, 354, 453, 1047
NmuCI	GTSAC	9 cut(s)	47, 107, 155, 306, 569, 640, 739, 847, 915
PagI	TCATGA	1 cut(s)	421
PaqCI	CACCTGC	1 cut(s)	608
PdmI	GAANNNNTTC	1 cut(s)	797
PfeI	GAWTC	3 cut(s)	323, 389, 887
PflFI	GACNNNGTC	1 cut(s)	745
PinAI	ACCGGT	1 cut(s)	355
PkrI	GCNGC	6 cut(s)	442, 445, 460, 598, 789, 1041
PleI	GAGTC	3 cut(s)	407, 527, 634
PpsI	GAGTC	3 cut(s)	407, 527, 634
PpuMI	RGGWCCY	1 cut(s)	1046
PshAI	GACNNNNGTC	1 cut(s)	576
Psp5II	RGGWCCY	1 cut(s)	1046
Psp6I	CCWGG	1 cut(s)	132
PspEI	GGTNACC	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	5 cut(s)	140, 263, 354, 453, 1047
PspPI	GGNCC	3 cut(s)	427, 696, 1046
PspPPI	RGGWCCY	1 cut(s)	1046
PstI	CTGCAG	2 cut(s)	619, 1044
PstNI	CAGNNNCTG	2 cut(s)	256, 446
PsyI	GACNNNGTC	1 cut(s)	745
PvuII	CAGCTG	2 cut(s)	446, 458
RsaI	GTAC	3 cut(s)	99, 263, 813
RsaNI	GTAC	3 cut(s)	98, 262, 812
SaqAI	TTAA	4 cut(s)	35, 606, 668, 1002
SatI	GCNGC	6 cut(s)	441, 444, 459, 597, 788, 1040
Sau3AI	GATC	2 cut(s)	39, 856
Sau96I	GGNCC	3 cut(s)	427, 696, 1046
SchI	GAGTC	3 cut(s)	407, 527, 635
ScrFI	CCNGG	2 cut(s)	134, 161
SduI	GDGCHC	1 cut(s)	660
SfaNI	GCATC	1 cut(s)	487
SfcI	CTRYAG	2 cut(s)	615, 1040
SinI	GGWCC	1 cut(s)	1046
Sse9I	AATT	8 cut(s)	9, 177, 558, 670, 715, 867, 925, 1120
SsiI	CCGC	3 cut(s)	59, 130, 596
SspI	AATATT	1 cut(s)	238
StyD4I	CCNGG	2 cut(s)	132, 159
StyI	CCWWGG	1 cut(s)	684
TaaI	ACNGT	2 cut(s)	320, 991
TaiI	ACGT	1 cut(s)	409
TasI	AATT	8 cut(s)	9, 177, 558, 670, 715, 867, 925, 1120
TatI	WGTACW	2 cut(s)	97, 811
TauI	GCSGC	1 cut(s)	599
TfiI	GAWTC	3 cut(s)	323, 389, 887
Tru1I	TTAA	4 cut(s)	35, 606, 668, 1002
Tru9I	TTAA	4 cut(s)	35, 606, 668, 1002
TscAI	CASTG	2 cut(s)	309, 508
TseFI	GTSAC	9 cut(s)	47, 107, 155, 306, 569, 640, 739, 847, 915
TseI	GCWGC	5 cut(s)	440, 443, 458, 787, 1039
Tsp45I	GTSAC	9 cut(s)	47, 107, 155, 306, 569, 640, 739, 847, 915
TspDTI	ATGAA	3 cut(s)	108, 219, 555
TspGWI	ACGGA	3 cut(s)	588, 659, 969
TspRI	CASTG	2 cut(s)	309, 508
Tth111I	GACNNNGTC	1 cut(s)	745
VpaK11BI	GGWCC	1 cut(s)	1046
XapI	RAATTY	3 cut(s)	670, 715, 925
XmiI	GTMKAC	1 cut(s)	983
XmnI	GAANNNNTTC	1 cut(s)	797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.