Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003069

Physical Location & Seq

Genomic Coordinates Reverse (-)

84667708 .. 84668448

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG615600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGTCCACTTGCTTCAACGCGCAGTTGACAATGACAATTCTGTTGGAGTTGGGGCTGCAGCTGAGGCTCTGGTTGCCATCTCATCATCTCAAGCTCATGAGATGCAGGAAAATGCTGCACATGTTCTTGATCAAGAAATTTCTGCTTGTCGTGAAGATGATGCAACAACAGATAATGTGGTAAAAGTTAAGGGAGCGATGGATTACTTTGAGTACATGACATTAAATGTGGAGGAAACCAAGTTAGAGCAGTGCTGCAATGTGCCTTCAGACAACCCAAAAGAAGAAGTGCCGCACGCTGTCAAAACGGCCACAAAGGGGCAATACGAGGAGATGGAGGGGACTTCCAGAGGGATGTTCTCCCTGGTATTGCTTGTTTGTCACGAAATGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF863

Protein Analysis

131

Amino Acids

14.4

Weight (kDa)

4.59

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003069)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47740 FvH4_6g47740 FvH4_6g47740 FvH4_6g47740
malus_domestica	MD09G1059300.v1.1 MD17G1054900.v1.1
prunus_persica	Prupe.3G261200_v2.0.a1
pyrus_communis	pycom08g18570 pycom111g05020 pycom111g05040 pycom111g05060 pycom17g05270 pycom17g05290
rosa_chinensis	RchiOBHm_Chr2g0166861 RchiOBHm_Chr4g0401141 RchiOBHm_Chr5g0037041 RchiOBHm_Chr7g0237831
rosa_laevigata	RLG00000021662 RLG00000021675
rosa_multiflora	Rmu_sc0005344.1_g000006
rosa_roxburghii	Rroxscaffold_2G00084060 Rroxscaffold_2G00084090 Rroxscaffold_2G00084470 Rroxscaffold_4G00327630
rosa_rugosa	Rorug02G0525900 Rorug02G0526000
rosa_samantha	Rh2AG592900 Rh2BG604100 Rh2BG604300 Rh2CG575000 Rh2CG575200 Rh2DG615600 Rh2DG615800 Rh3DG312900 Rh4DG186200 Rh5DG059300 Rh5DG383900
rosa_wichuraiana	Rw2G049350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	21
AciI	CCGC	1 cut(s)	293
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	1 cut(s)	138
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	318
AflIII	ACRYGT	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	363
AluBI	AGCT	2 cut(s)	62, 95
AluI	AGCT	2 cut(s)	62, 95
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	4 cut(s)	56, 59, 116, 255
ApoI	RAATTY	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	4 cut(s)	43, 71, 103, 242
BccI	CCATC	3 cut(s)	86, 193, 328
BceAI	ACGGC	1 cut(s)	324
BciT130I	CCWGG	1 cut(s)	365
BclI	TGATCA	1 cut(s)	130
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	5 cut(s)	57, 60, 117, 256, 293
BlsI	GCNGC	5 cut(s)	58, 61, 118, 257, 294
Bme1390I	CCNGG	1 cut(s)	365
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	365
BmsI	GCATC	2 cut(s)	93, 151
Bpu10I	CCTNAGC	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse3DI	GCAATG	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	365
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	1 cut(s)	360
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	4 cut(s)	43, 71, 103, 242
BsgI	GTGCAG	1 cut(s)	102
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	355
BsnI	GGCC	1 cut(s)	311
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	1 cut(s)	293
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	97
BspMAI	CTGCAG	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	360
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 74
BstNI	CCWGG	1 cut(s)	365
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	363
BstSFI	CTRYAG	1 cut(s)	57
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	4 cut(s)	43, 71, 103, 242
BsuRI	GGCC	1 cut(s)	311
BtgZI	GCGATG	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	360
BtsI	GCAGTG	1 cut(s)	257
BtsIMutI	CAGTG	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	297
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	3 cut(s)	98, 122, 217
CviJI	RGCY	5 cut(s)	56, 62, 68, 95, 311
CviKI_1	RGCY	5 cut(s)	56, 62, 68, 95, 311
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	363
FaeI	CATG	3 cut(s)	101, 125, 220
FaiI	YATR	3 cut(s)	99, 123, 218
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	3 cut(s)	97, 121, 216
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	5 cut(s)	57, 60, 117, 256, 293
FokI	GGATG	1 cut(s)	367
Fsp4HI	GCNGC	5 cut(s)	57, 60, 117, 256, 293
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	5 cut(s)	57, 60, 117, 256, 293
HaeIII	GGCC	1 cut(s)	311
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	3 cut(s)	101, 125, 220
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
Hpy166II	GTNNAC	2 cut(s)	7, 28
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	6 cut(s)	98, 128, 134, 152, 348, 383
Hpy8I	GTNNAC	2 cut(s)	7, 28
HpyAV	CCTTC	1 cut(s)	276
HpyCH4V	TGCA	5 cut(s)	59, 106, 119, 164, 258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 74
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	101, 125, 220
HspAI	GCGC	1 cut(s)	21
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	194
LpnPI	CCDG	5 cut(s)	56, 92, 350, 361, 377
Lsp1109I	GCAGC	4 cut(s)	43, 71, 103, 242
LweI	GCATC	2 cut(s)	93, 151
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	2 cut(s)	167, 296
MluCI	AATT	2 cut(s)	37, 138
MmeI	TCCRAC	1 cut(s)	25
MnlI	CCTC	6 cut(s)	58, 226, 322, 331, 344, 384
MseI	TTAA	2 cut(s)	189, 224
MspA1I	CMGCKG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	365
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	65, 74
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	3 cut(s)	101, 125, 220
NmuCI	GTSAC	1 cut(s)	380
NspI	RCATGY	1 cut(s)	125
PagI	TCATGA	1 cut(s)	97
PciI	ACATGT	1 cut(s)	121
PkrI	GCNGC	5 cut(s)	58, 61, 118, 257, 294
PscI	ACATGT	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	2 cut(s)	189, 224
SatI	GCNGC	5 cut(s)	57, 60, 117, 256, 293
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	365
SetI	ASST	3 cut(s)	64, 97, 395
SfaNI	GCATC	2 cut(s)	93, 151
SfcI	CTRYAG	1 cut(s)	57
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	2 cut(s)	37, 138
SsiI	CCGC	1 cut(s)	293
StyD4I	CCNGG	1 cut(s)	363
TasI	AATT	2 cut(s)	37, 138
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	295
Tru1I	TTAA	2 cut(s)	189, 224
Tru9I	TTAA	2 cut(s)	189, 224
TscAI	CASTG	1 cut(s)	257
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	4 cut(s)	56, 59, 116, 255
Tsp45I	GTSAC	1 cut(s)	380
TspRI	CASTG	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	138
XceI	RCATGY	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.