Rh2CG575000

Plant protein of unknown function (DUF863)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0003069
Physical Location & Seq
Reverse (-)
75489755 .. 75505496
15742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG575000.1

Sequence Viewer

Length: 642 bp
ATGCTGTCGGGTTCTGTAAGGGCTGCAGCTGAGGCTCTGGTTTCCATCTCATTATCACAAGCTCATGAGATGCAGGAAAATGCTGCACATGTTCTTGATCAAGAAATTTCTACTTGTCGTGAAGATGATGCAACAGTAATTGACAACTCCCTTCTTTGGTTTGCAGAAATAGTTTCTTCAAACGAAGAAAATCTTGAACAGACAGATAATGTGGTAAAATTTAAGGGAGCGATGGATTACTTTGAGTACATGACATTAAATGTGGCGGAAACCAAGTTAGAGCAGTGCTGCAATGTGCCTTCAGACAACCCAAAAGAAGAAGTGCCGCACGCTGTCAAAACGGCCACAAAGGGGCAATACGAGGAGATGGAGGGGACTTCCAGAGGGATGTTCTCCCTGAGAAATGCTGGTAAGGTTGGCGGGGGAAGAGGGAGGAAGCGTTTGGGAACTTGCGCACTACCTGCTTCTAGTGCTGTGCAGGCTGCGTCTCGACCAAGTCTTTTTCGATTGATGAGTAAGAGCAAACAAATGATCAGCCTTGGTTTGAGAAAAATCAAAACTTTGTTTTCTGAGGTGTTAATCGAGCAGGGATGTACCAATTATGCAGGGCTGCAGGCAGATTCTAAGTGTGAACCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF863

Protein Analysis

213

Amino Acids

23.25

Weight (kDa)

5.36

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF863 PF05904 6 - 98 1.3e-11 Plant protein of unknown function (DUF863)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 454
Acc36I ACCTGC 1 cut(s) 469
AciI CCGC 3 cut(s) 266, 326, 420
AcoI YGGCCR 1 cut(s) 342
AcsI RAATTY 2 cut(s) 105, 218
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 2 cut(s) 248, 595
AfiI CCNNNNNNNGG 2 cut(s) 156, 351
AflIII ACRYGT 1 cut(s) 88
AgsI TTSAA 2 cut(s) 180, 197
AluBI AGCT 2 cut(s) 29, 62
AluI AGCT 2 cut(s) 29, 62
Alw26I GTCTC 1 cut(s) 492
AoxI GGCC 1 cut(s) 342
ApeKI GCWGC 6 cut(s) 23, 26, 83, 288, 482, 610
ApoI RAATTY 2 cut(s) 105, 218
AspLEI GCGC 1 cut(s) 455
BbvCI CCTCAGC 1 cut(s) 30
BbvI GCAGC 6 cut(s) 10, 38, 70, 275, 469, 597
BccI CCATC 3 cut(s) 53, 226, 361
BceAI ACGGC 1 cut(s) 357
BclI TGATCA 2 cut(s) 97, 531
BcoDI GTCTC 1 cut(s) 492
BfaI CTAG 1 cut(s) 468
BfmI CTRYAG 2 cut(s) 24, 611
BfuAI ACCTGC 1 cut(s) 469
BisI GCNGC 7 cut(s) 24, 27, 84, 289, 326, 483, 611
BlsI GCNGC 7 cut(s) 25, 28, 85, 290, 327, 484, 612
BmsI GCATC 2 cut(s) 60, 118
Bpu10I CCTNAGC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 538
BsaXI ACNNNNNCTCC 2 cut(s) 424, 454
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 351
Bse3DI GCAATG 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 538
BseGI GGATG 2 cut(s) 393, 596
BseLI CCNNNNNNNGG 2 cut(s) 156, 351
BseMI GCAATG 1 cut(s) 298
BseMII CTCAG 3 cut(s) 21, 389, 561
BseRI GAGGAG 1 cut(s) 377
BseXI GCAGC 6 cut(s) 10, 38, 70, 275, 469, 597
BsgI GTGCAG 2 cut(s) 69, 497
BshFI GGCC 1 cut(s) 344
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 2 cut(s) 156, 351
BsmAI GTCTC 1 cut(s) 492
BsmBI CGTCTC 1 cut(s) 492
BsmFI GGGAC 1 cut(s) 388
BsnI GGCC 1 cut(s) 344
Bsp143I GATC 2 cut(s) 97, 531
BspACI CCGC 3 cut(s) 266, 326, 420
BspANI GGCC 1 cut(s) 344
BspCNI CTCAG 3 cut(s) 22, 390, 562
BspHI TCATGA 1 cut(s) 64
BspMAI CTGCAG 2 cut(s) 28, 615
BspMI ACCTGC 1 cut(s) 469
BsrDI GCAATG 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 538
BssMI GATC 2 cut(s) 97, 531
BssT1I CCWWGG 1 cut(s) 538
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 421
BstAPI GCANNNNNTGC 1 cut(s) 461
BstC8I GCNNGC 3 cut(s) 330, 480, 615
BstDEI CTNAG 4 cut(s) 30, 398, 570, 624
BstF5I GGATG 2 cut(s) 393, 596
BstHHI GCGC 1 cut(s) 455
BstKTI GATC 2 cut(s) 100, 534
BstMAI GTCTC 1 cut(s) 492
BstMBI GATC 2 cut(s) 97, 531
BstMWI GCNNNNNNNGC 4 cut(s) 32, 461, 470, 479
BstNSI RCATGY 1 cut(s) 92
BstSFI CTRYAG 2 cut(s) 24, 611
BstV1I GCAGC 6 cut(s) 10, 38, 70, 275, 469, 597
BsuRI GGCC 1 cut(s) 344
BtgZI GCGATG 1 cut(s) 245
BtsCI GGATG 2 cut(s) 393, 596
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 290
BveI ACCTGC 1 cut(s) 469
Cac8I GCNNGC 3 cut(s) 330, 480, 615
CciI TCATGA 1 cut(s) 64
CfoI GCGC 1 cut(s) 455
CseI GACGC 1 cut(s) 474
Csp6I GTAC 2 cut(s) 247, 594
CviAII CATG 3 cut(s) 65, 89, 250
CviJI RGCY 8 cut(s) 23, 29, 35, 62, 344, 482, 537, 610
CviKI_1 RGCY 8 cut(s) 23, 29, 35, 62, 344, 482, 537, 610
CviQI GTAC 2 cut(s) 247, 594
DdeI CTNAG 4 cut(s) 30, 398, 570, 624
DpnI GATC 2 cut(s) 99, 533
DpnII GATC 2 cut(s) 97, 531
EaeI YGGCCR 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 421
EarI CTCTTC 1 cut(s) 421
EciI GGCGGA 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 538
Eco57I CTGAAG 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 538
ErhI CCWWGG 1 cut(s) 538
Esp3I CGTCTC 1 cut(s) 492
FaeI CATG 3 cut(s) 68, 92, 253
FaiI YATR 4 cut(s) 66, 90, 251, 603
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FaqI GGGAC 1 cut(s) 388
FatI CATG 3 cut(s) 64, 88, 249
FauI CCCGC 1 cut(s) 413
FbaI TGATCA 2 cut(s) 97, 531
Fnu4HI GCNGC 7 cut(s) 24, 27, 84, 289, 326, 483, 611
FokI GGATG 2 cut(s) 400, 603
Fsp4HI GCNGC 7 cut(s) 24, 27, 84, 289, 326, 483, 611
FspBI CTAG 1 cut(s) 468
FspI TGCGCA 1 cut(s) 454
GlaI GCGC 1 cut(s) 454
GluI GCNGC 7 cut(s) 24, 27, 84, 289, 326, 483, 611
HaeIII GGCC 1 cut(s) 344
HgaI GACGC 1 cut(s) 474
HhaI GCGC 1 cut(s) 455
Hin1II CATG 3 cut(s) 68, 92, 253
Hin6I GCGC 1 cut(s) 453
HinP1I GCGC 1 cut(s) 453
HinfI GANTC 1 cut(s) 620
Hpy166II GTNNAC 1 cut(s) 632
Hpy188I TCNGA 2 cut(s) 304, 571
Hpy188III TCNNGA 7 cut(s) 65, 95, 101, 119, 194, 381, 489
Hpy8I GTNNAC 1 cut(s) 632
HpyAV CCTTC 2 cut(s) 161, 309
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 9 cut(s) 26, 73, 86, 131, 164, 291, 478, 605, 613
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 461, 470, 479
HpyF3I CTNAG 4 cut(s) 30, 398, 570, 624
Hsp92II CATG 3 cut(s) 68, 92, 253
HspAI GCGC 1 cut(s) 453
Ksp22I TGATCA 2 cut(s) 97, 531
Kzo9I GATC 2 cut(s) 97, 531
LmnI GCTCC 1 cut(s) 227
Lsp1109I GCAGC 6 cut(s) 10, 38, 70, 275, 469, 597
LweI GCATC 2 cut(s) 60, 118
MaeI CTAG 1 cut(s) 468
MalI GATC 2 cut(s) 99, 533
MboI GATC 2 cut(s) 97, 531
MboII GAAGA 5 cut(s) 134, 168, 197, 329, 438
MluCI AATT 4 cut(s) 105, 138, 218, 598
MnlI CCTC 7 cut(s) 25, 355, 364, 377, 422, 426, 565
MseI TTAA 3 cut(s) 222, 257, 578
MspA1I CMGCKG 1 cut(s) 29
MwoI GCNNNNNNNGC 4 cut(s) 32, 461, 470, 479
NdeII GATC 2 cut(s) 97, 531
NlaIII CATG 3 cut(s) 68, 92, 253
NsbI TGCGCA 1 cut(s) 454
NspI RCATGY 1 cut(s) 92
PagI TCATGA 1 cut(s) 64
PciI ACATGT 1 cut(s) 88
PfeI GAWTC 1 cut(s) 620
PflFI GACNNNGTC 1 cut(s) 495
PkrI GCNGC 7 cut(s) 25, 28, 85, 290, 327, 484, 612
PscI ACATGT 1 cut(s) 88
PstI CTGCAG 2 cut(s) 28, 615
PsyI GACNNNGTC 1 cut(s) 495
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 2 cut(s) 248, 595
RsaNI GTAC 2 cut(s) 247, 594
SaqAI TTAA 3 cut(s) 222, 257, 578
SatI GCNGC 7 cut(s) 24, 27, 84, 289, 326, 483, 611
Sau3AI GATC 2 cut(s) 97, 531
SetI ASST 6 cut(s) 31, 64, 417, 463, 576, 637
SfaNI GCATC 2 cut(s) 60, 118
SfcI CTRYAG 2 cut(s) 24, 611
Sse9I AATT 4 cut(s) 105, 138, 218, 598
SsiI CCGC 3 cut(s) 266, 326, 420
SspMI CTAG 1 cut(s) 468
StyI CCWWGG 1 cut(s) 538
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 3 cut(s) 490, 505, 582
TasI AATT 4 cut(s) 105, 138, 218, 598
TatI WGTACW 1 cut(s) 246
TauI GCSGC 1 cut(s) 328
TfiI GAWTC 1 cut(s) 620
Tru1I TTAA 3 cut(s) 222, 257, 578
Tru9I TTAA 3 cut(s) 222, 257, 578
TscAI CASTG 1 cut(s) 290
TseI GCWGC 6 cut(s) 23, 26, 83, 288, 482, 610
TspRI CASTG 1 cut(s) 290
Tth111I GACNNNGTC 1 cut(s) 495
XapI RAATTY 2 cut(s) 105, 218
XceI RCATGY 1 cut(s) 92
XspI CTAG 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.