Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0007521

Physical Location & Seq

Genomic Coordinates Reverse (-)

11387016 .. 11389798

Gene Structure 2783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g12870.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAACGGAGTTGGGAGGCAAGGGCAGAGATCTGGTGCGGCGGGGGTGCACCACCAGCGGCAATACTCTGATAACTTCTTGGAGACTTCGTCCAATGGGAGGTGGCTTCAGTCAGCTGGTCTTCAACACCTTCAGTCTTCTTCCAACTCTTCATCTGGTCCTCCTCCTCAGGACTATGGTTTCTATGGTGGAGGTGGAGGAGGACCGGCTTCTAGAGTGTACCGGAACGCACAGAGAGGGTACAATGAGTTTTATGCGGAGGCTCCATCTACACCTCCCTACAATTCCCGGAGGAAGAGCGACGAGGAGTCGCCCAATGAATTCAGTCCTGGACTCTTGGATCTGCATTCCTTTGATACTGAGCTCATACCTGATATGCCAACCTCTGGGTTGCATGATGGAGCTTCTCTATATTATCCTTCAAGGGGAAGAAGCTTTGATGATTCTGAACCCTACATTTCTAATAACAAACAAACAGAAAGGGCTCGGCTACCAGAAAACAACCTCCTAAAAAGTTTTGCCGCAGACAAAGAGAAAGCTAGTTCTGTAGCAAAGATCAAAGTTGTGGTGCGCAAGAGACCACTTAATAAAAAGGAGTTGGCAAAGAGTGAGGAAGATATCATAGATACACTTTCAAACTCCGTGACAGTTCATGAGACTAAGCTCAAGGTTGACCTAACAGAATACATGGAAAAACATGAATTTGTGTTTGATGCAGTGTTGAATGAGGAAGTCTCCAATGATGAAGTATATCATGAGACTGTGGAGCCCATAGTTCCAATAATTTTCCAACGCACAAAGGCAACTTGTTTTGCGTATGGACAAACTGGGAGTGGAAAAACATATACCATGAAACCATTGCCTCTTAAAGCATCACGAGACATCTTGAGGTTGATGCACCATACATACCGTAGCCAGGGATTTCAGTTGTTTGTGAGCTTCTTCGAAATATATGGGGGAAAACTTTTTGATCGATCCTCAATGATCGAAAAAAGCTTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005886 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007049 GO:0007059 GO:0007080 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0008283 GO:0008608 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019237 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0022411 GO:0030951 GO:0030952 GO:0031109 GO:0032984 GO:0032991 GO:0035371 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048002 GO:0048193 GO:0048285 GO:0050000 GO:0050789 GO:0050794 GO:0051010 GO:0051179 GO:0051234 GO:0051261 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051983 GO:0065007 GO:0071840 GO:0071944 GO:0097159 GO:0097435 GO:0098687 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1901363 GO:1903047 GO:1903338 GO:1990752 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

335

Amino Acids

37.43

Weight (kDa)

6.57

Isoelectric Point (pI)

58.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31460 FvH4_6g31460 FvH4_6g31460
malus_domestica	MD15G1185700.v1.1
pyrus_communis	pycom09g12870
rosa_chinensis	RchiOBHm_Chr2g0085031 RchiOBHm_Chr2g0113281
rosa_laevigata	RLG00000010839 RLG00000019129 RLG00000034360 RLG00000034995
rosa_roxburghii	Rroxscaffold_1G00003470 Rroxscaffold_1G00033120 Rroxscaffold_5G00342210 Rroxscaffold_5G00342360
rosa_rugosa	Rorug04G0188100.1
rosa_samantha	Rh1AG098400 Rh1AG203700 Rh2AG396900 Rh2AG398300 Rh2AG398400 Rh2BG258800 Rh2BG310100 Rh2CG383400 Rh5BG449800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	572
AccB7I	CCANNNNNTGG	1 cut(s)	386
AciI	CCGC	5 cut(s)	38, 41, 58, 257, 522
AclWI	GGATC	2 cut(s)	348, 969
AcsI	RAATTY	2 cut(s)	320, 701
AcuI	CTGAAG	2 cut(s)	92, 116
AfaI	GTAC	2 cut(s)	221, 242
AfiI	CCNNNNNNNGG	4 cut(s)	99, 386, 425, 916
AgsI	TTSAA	4 cut(s)	125, 423, 636, 724
AhdI	GACNNNNNGTC	1 cut(s)	307
AjnI	CCWGG	2 cut(s)	328, 915
AluBI	AGCT	8 cut(s)	116, 364, 404, 435, 539, 664, 939, 996
AluI	AGCT	8 cut(s)	116, 364, 404, 435, 539, 664, 939, 996
Alw21I	GWGCWC	2 cut(s)	51, 366
Alw26I	GTCTC	6 cut(s)	77, 571, 650, 739, 752, 873
Alw44I	GTGCAC	1 cut(s)	47
AlwI	GGATC	2 cut(s)	348, 969
ApaLI	GTGCAC	1 cut(s)	47
ApoI	RAATTY	2 cut(s)	320, 701
AspLEI	GCGC	1 cut(s)	573
AspS9I	GGNCC	2 cut(s)	158, 203
AsuC2I	CCSGG	1 cut(s)	289
AsuII	TTCGAA	1 cut(s)	945
AvaII	GGWCC	2 cut(s)	158, 203
AxyI	CCTNAGG	1 cut(s)	168
BaeGI	GKGCMC	1 cut(s)	51
BanII	GRGCYC	3 cut(s)	366, 487, 771
BauI	CACGAG	1 cut(s)	876
BbsI	GAAGAC	2 cut(s)	113, 129
Bbv12I	GWGCWC	2 cut(s)	51, 366
BccI	CCATC	2 cut(s)	274, 392
BciT130I	CCWGG	2 cut(s)	330, 917
BcnI	CCSGG	1 cut(s)	289
BcoDI	GTCTC	6 cut(s)	77, 571, 650, 739, 752, 873
BfaI	CTAG	2 cut(s)	213, 540
BfmI	CTRYAG	1 cut(s)	546
BglII	AGATCT	1 cut(s)	29
BisI	GCNGC	3 cut(s)	39, 59, 522
BlsI	GCNGC	3 cut(s)	40, 60, 523
Bme1390I	CCNGG	3 cut(s)	289, 330, 917
Bme18I	GGWCC	2 cut(s)	158, 203
BmeRI	GACNNNNNGTC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	158, 203
BmiI	GGNNCC	2 cut(s)	264, 768
BmrFI	CCNGG	3 cut(s)	289, 330, 917
BmrI	ACTGGG	1 cut(s)	837
BmsI	GCATC	3 cut(s)	703, 881, 885
BmuI	ACTGGG	1 cut(s)	837
BpiI	GAAGAC	2 cut(s)	113, 129
BplI	GAGNNNNNCTC	2 cut(s)	719, 751
Bpu14I	TTCGAA	1 cut(s)	945
BpuEI	CTTGAG	2 cut(s)	650, 907
BpuMI	CCSGG	1 cut(s)	289
Bsa29I	ATCGAT	1 cut(s)	973
BsaI	GGTCTC	1 cut(s)	571
BsaJI	CCNNGG	1 cut(s)	916
BsaWI	WCCGGW	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 386, 425, 916
Bse118I	RCCGGY	1 cut(s)	205
Bse1I	ACTGG	1 cut(s)	832
Bse21I	CCTNAGG	1 cut(s)	168
Bse3DI	GCAATG	1 cut(s)	857
BseBI	CCWGG	2 cut(s)	330, 917
BseCI	ATCGAT	1 cut(s)	973
BseDI	CCNNGG	1 cut(s)	916
BseLI	CCNNNNNNNGG	4 cut(s)	99, 386, 425, 916
BseMI	GCAATG	1 cut(s)	857
BseMII	CTCAG	2 cut(s)	182, 351
BseNI	ACTGG	1 cut(s)	832
BseRI	GAGGAG	4 cut(s)	153, 156, 213, 320
BseSI	GKGCMC	1 cut(s)	51
BshVI	ATCGAT	1 cut(s)	973
BsiHKAI	GWGCWC	2 cut(s)	51, 366
BsiSI	CCGG	3 cut(s)	206, 223, 289
BslI	CCNNNNNNNGG	4 cut(s)	99, 386, 425, 916
BsmAI	GTCTC	6 cut(s)	77, 571, 650, 739, 752, 873
BsmI	GAATGC	1 cut(s)	346
Bso31I	GGTCTC	1 cut(s)	571
Bsp119I	TTCGAA	1 cut(s)	945
Bsp1286I	GDGCHC	4 cut(s)	51, 366, 487, 771
Bsp143I	GATC	6 cut(s)	29, 340, 555, 970, 974, 984
BspACI	CCGC	5 cut(s)	38, 41, 58, 257, 522
BspCNI	CTCAG	2 cut(s)	181, 352
BspDI	ATCGAT	1 cut(s)	973
BspHI	TCATGA	2 cut(s)	652, 754
BspLI	GGNNCC	2 cut(s)	264, 768
BspPI	GGATC	2 cut(s)	348, 969
BspQI	GCTCTTC	1 cut(s)	290
BspT104I	TTCGAA	1 cut(s)	945
BspTNI	GGTCTC	1 cut(s)	571
BsrDI	GCAATG	1 cut(s)	857
BsrFI	RCCGGY	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	832
BssAI	RCCGGY	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	916
BssMI	GATC	6 cut(s)	29, 340, 555, 970, 974, 984
BssSI	CACGAG	1 cut(s)	876
Bst2BI	CACGAG	1 cut(s)	876
Bst2UI	CCWGG	2 cut(s)	330, 917
Bst4CI	ACNGT	3 cut(s)	649, 763, 911
Bst6I	CTCTTC	2 cut(s)	154, 290
BstBI	TTCGAA	1 cut(s)	945
BstDEI	CTNAG	3 cut(s)	168, 360, 660
BstHHI	GCGC	1 cut(s)	573
BstKTI	GATC	6 cut(s)	32, 343, 558, 973, 977, 987
BstMAI	GTCTC	6 cut(s)	77, 571, 650, 739, 752, 873
BstMBI	GATC	6 cut(s)	29, 340, 555, 970, 974, 984
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	2 cut(s)	330, 917
BstSCI	CCNGG	3 cut(s)	287, 328, 915
BstSFI	CTRYAG	1 cut(s)	546
BstSLI	GKGCMC	1 cut(s)	51
BstV2I	GAAGAC	2 cut(s)	113, 129
BstX2I	RGATCY	2 cut(s)	29, 340
BstYI	RGATCY	2 cut(s)	29, 340
Bsu15I	ATCGAT	1 cut(s)	973
Bsu36I	CCTNAGG	1 cut(s)	168
BsuTUI	ATCGAT	1 cut(s)	973
BtsI	GCAGTG	1 cut(s)	723
BtsIMutI	CAGTG	1 cut(s)	723
CciI	TCATGA	2 cut(s)	652, 754
CfoI	GCGC	1 cut(s)	573
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	2 cut(s)	158, 203
ClaI	ATCGAT	1 cut(s)	973
Csp6I	GTAC	2 cut(s)	220, 241
CviAII	CATG	7 cut(s)	395, 653, 688, 698, 755, 850, 1002
CviQI	GTAC	2 cut(s)	220, 241
DdeI	CTNAG	3 cut(s)	168, 360, 660
DpnI	GATC	6 cut(s)	31, 342, 557, 972, 976, 986
DpnII	GATC	6 cut(s)	29, 340, 555, 970, 974, 984
DriI	GACNNNNNGTC	1 cut(s)	307
Eam1104I	CTCTTC	2 cut(s)	154, 290
Eam1105I	GACNNNNNGTC	1 cut(s)	307
EarI	CTCTTC	2 cut(s)	154, 290
Ecl136II	GAGCTC	1 cut(s)	364
Eco24I	GRGCYC	3 cut(s)	366, 487, 771
Eco31I	GGTCTC	1 cut(s)	571
Eco32I	GATATC	1 cut(s)	619
Eco47I	GGWCC	2 cut(s)	158, 203
Eco53kI	GAGCTC	1 cut(s)	364
Eco57I	CTGAAG	2 cut(s)	92, 116
Eco81I	CCTNAGG	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	320
EcoRII	CCWGG	2 cut(s)	328, 915
EcoRV	GATATC	1 cut(s)	619
EcoT38I	GRGCYC	3 cut(s)	366, 487, 771
FaeI	CATG	7 cut(s)	398, 656, 691, 701, 758, 853, 1005
FatI	CATG	7 cut(s)	394, 652, 687, 697, 754, 849, 1001
FauI	CCCGC	1 cut(s)	34
Fnu4HI	GCNGC	3 cut(s)	39, 59, 522
FriOI	GRGCYC	3 cut(s)	366, 487, 771
Fsp4HI	GCNGC	3 cut(s)	39, 59, 522
FspBI	CTAG	2 cut(s)	213, 540
FspI	TGCGCA	1 cut(s)	572
GlaI	GCGC	1 cut(s)	572
GluI	GCNGC	3 cut(s)	39, 59, 522
HapII	CCGG	3 cut(s)	206, 223, 289
HhaI	GCGC	1 cut(s)	573
Hin1II	CATG	7 cut(s)	398, 656, 691, 701, 758, 853, 1005
Hin6I	GCGC	1 cut(s)	571
HinP1I	GCGC	1 cut(s)	571
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HindIII	AAGCTT	2 cut(s)	433, 994
HinfI	GANTC	3 cut(s)	308, 333, 443
HpaII	CCGG	3 cut(s)	206, 223, 289
Hpy166II	GTNNAC	3 cut(s)	49, 220, 673
Hpy188I	TCNGA	2 cut(s)	70, 448
Hpy188III	TCNNGA	6 cut(s)	170, 213, 653, 755, 876, 886
Hpy8I	GTNNAC	3 cut(s)	49, 220, 673
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	2 cut(s)	140, 429
HpyCH4III	ACNGT	3 cut(s)	649, 763, 911
HpyCH4V	TGCA	6 cut(s)	49, 346, 394, 716, 898, 1001
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	3 cut(s)	168, 360, 660
Hsp92II	CATG	7 cut(s)	398, 656, 691, 701, 758, 853, 1005
HspAI	GCGC	1 cut(s)	571
Kzo9I	GATC	6 cut(s)	29, 340, 555, 970, 974, 984
LguI	GCTCTTC	1 cut(s)	290
LmnI	GCTCC	3 cut(s)	268, 401, 766
LweI	GCATC	3 cut(s)	703, 881, 885
MaeI	CTAG	2 cut(s)	213, 540
MaeIII	GTNAC	1 cut(s)	643
MalI	GATC	6 cut(s)	31, 342, 557, 972, 976, 986
MboI	GATC	6 cut(s)	29, 340, 555, 970, 974, 984
MboII	GAAGA	8 cut(s)	113, 129, 132, 141, 307, 441, 626, 934
MflI	RGATCY	2 cut(s)	29, 340
MhlI	GDGCHC	4 cut(s)	51, 366, 487, 771
MluCI	AATT	4 cut(s)	283, 320, 701, 783
MlyI	GAGTC	2 cut(s)	317, 327
MmeI	TCCRAC	2 cut(s)	168, 814
MseI	TTAA	2 cut(s)	585, 867
MspA1I	CMGCKG	2 cut(s)	58, 116
MspI	CCGG	3 cut(s)	206, 223, 289
MspR9I	CCNGG	3 cut(s)	289, 330, 917
Mva1269I	GAATGC	1 cut(s)	346
MvaI	CCWGG	2 cut(s)	330, 917
MwoI	GCNNNNNNNGC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	289
NdeII	GATC	6 cut(s)	29, 340, 555, 970, 974, 984
NlaIII	CATG	7 cut(s)	398, 656, 691, 701, 758, 853, 1005
NlaIV	GGNNCC	2 cut(s)	264, 768
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	643
NsbI	TGCGCA	1 cut(s)	572
NspV	TTCGAA	1 cut(s)	945
PagI	TCATGA	2 cut(s)	652, 754
PciSI	GCTCTTC	1 cut(s)	290
PctI	GAATGC	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	443
PflFI	GACNNNGTC	1 cut(s)	88
PflMI	CCANNNNNTGG	1 cut(s)	386
PfoI	TCCNGGA	2 cut(s)	287, 328
PkrI	GCNGC	3 cut(s)	40, 60, 523
PleI	GAGTC	2 cut(s)	316, 327
PpsI	GAGTC	2 cut(s)	316, 327
Psp124BI	GAGCTC	1 cut(s)	366
Psp6I	CCWGG	2 cut(s)	328, 915
PspGI	CCWGG	2 cut(s)	328, 915
PspN4I	GGNNCC	2 cut(s)	264, 768
PspPI	GGNCC	2 cut(s)	158, 203
PsuI	RGATCY	2 cut(s)	29, 340
PsyI	GACNNNGTC	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	2 cut(s)	221, 242
RsaNI	GTAC	2 cut(s)	220, 241
SacI	GAGCTC	1 cut(s)	366
SapI	GCTCTTC	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	585, 867
SatI	GCNGC	3 cut(s)	39, 59, 522
Sau3AI	GATC	6 cut(s)	29, 340, 555, 970, 974, 984
Sau96I	GGNCC	2 cut(s)	158, 203
SchI	GAGTC	2 cut(s)	317, 327
ScrFI	CCNGG	3 cut(s)	289, 330, 917
SduI	GDGCHC	4 cut(s)	51, 366, 487, 771
SfaNI	GCATC	3 cut(s)	703, 881, 885
SfcI	CTRYAG	1 cut(s)	546
SfuI	TTCGAA	1 cut(s)	945
SinI	GGWCC	2 cut(s)	158, 203
SmlI	CTYRAG	2 cut(s)	665, 886
SmoI	CTYRAG	2 cut(s)	665, 886
Sse9I	AATT	4 cut(s)	283, 320, 701, 783
SsiI	CCGC	5 cut(s)	38, 41, 58, 257, 522
SspMI	CTAG	2 cut(s)	213, 540
SstI	GAGCTC	1 cut(s)	366
StyD4I	CCNGG	3 cut(s)	287, 328, 915
TaaI	ACNGT	3 cut(s)	649, 763, 911
TaqI	TCGA	3 cut(s)	945, 973, 987
TasI	AATT	4 cut(s)	283, 320, 701, 783
TauI	GCSGC	3 cut(s)	41, 61, 524
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	2 cut(s)	585, 867
Tru9I	TTAA	2 cut(s)	585, 867
TscAI	CASTG	1 cut(s)	723
TseFI	GTSAC	1 cut(s)	643
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	7 cut(s)	17, 141, 333, 641, 714, 759, 866
TspGWI	ACGGA	2 cut(s)	21, 631
TspRI	CASTG	1 cut(s)	723
Tth111I	GACNNNGTC	1 cut(s)	88
Van91I	CCANNNNNTGG	1 cut(s)	386
VneI	GTGCAC	1 cut(s)	47
VpaK11BI	GGWCC	2 cut(s)	158, 203
XapI	RAATTY	2 cut(s)	320, 701
XbaI	TCTAGA	1 cut(s)	212
XspI	CTAG	2 cut(s)	213, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.