Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007521

Physical Location & Seq

Genomic Coordinates Forward (+)

36254804 .. 36281839

Gene Structure 27036 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG310100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTACTGGCGATCCGGTCAGGTGGTTCTCACAAGAAAGGCAAAGGACCAGTATTCTTGGAAAGGATTTGGGGCAATGTCTAATGCTATACAGGAGCTTAAGGAAGAGGGTCTGAAAGAGAACTTCAATACCTTCCATCAATTTTACGGCAATGATGATCCAAAAAAAGTATTCCTTAAGACGAGAAGAGGATTTGTTCGCATAGCCATGGAGAATGGCTATCCCCTAGTTTCAGTTTTCTGCTTTGGTCAGTTTTTATGTGATCTTGCTTTGTTAGTATTCGACACTGCCGCTGGAGTTTGGTTAGATAGAAACGGGCTTGTGACCTCCTCATGGACAGGCAAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

116

Amino Acids

13.32

Weight (kDa)

8.95

Isoelectric Point (pI)

19.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAGAT	PF03982	52 - 84	4.6e-08	Diacylglycerol acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31460 FvH4_6g31460 FvH4_6g31460
malus_domestica	MD15G1185700.v1.1
pyrus_communis	pycom09g12870
rosa_chinensis	RchiOBHm_Chr2g0085031 RchiOBHm_Chr2g0113281
rosa_laevigata	RLG00000010839 RLG00000019129 RLG00000034360 RLG00000034995
rosa_roxburghii	Rroxscaffold_1G00003470 Rroxscaffold_1G00033120 Rroxscaffold_5G00342210 Rroxscaffold_5G00342360
rosa_rugosa	Rorug04G0188100.1
rosa_samantha	Rh1AG098400 Rh1AG203700 Rh2AG396900 Rh2AG398300 Rh2AG398400 Rh2BG258800 Rh2BG310100 Rh2CG383400 Rh5BG449800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	2 cut(s)	6, 152
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	333
AflII	CTTAAG	2 cut(s)	98, 176
AgsI	TTSAA	1 cut(s)	127
AluBI	AGCT	1 cut(s)	97
AluI	AGCT	1 cut(s)	97
AlwI	GGATC	2 cut(s)	6, 152
AspS9I	GGNCC	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	46
BccI	CCATC	1 cut(s)	144
BceAI	ACGGC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	227
BfrI	CTTAAG	2 cut(s)	98, 176
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BpmI	CTGGAG	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
Bse1I	ACTGG	2 cut(s)	11, 49
Bse3DI	GCAATG	2 cut(s)	81, 157
BseDI	CCNNGG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMI	GCAATG	2 cut(s)	81, 157
BseNI	ACTGG	2 cut(s)	11, 49
BseRI	GAGGAG	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	333
Bsp143I	GATC	3 cut(s)	11, 157, 262
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	1 cut(s)	291
BspPI	GGATC	2 cut(s)	6, 152
BspTI	CTTAAG	2 cut(s)	98, 176
BsrDI	GCAATG	2 cut(s)	81, 157
BsrI	ACTGG	2 cut(s)	11, 49
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	3 cut(s)	11, 157, 262
BssT1I	CCWWGG	1 cut(s)	207
Bst6I	CTCTTC	2 cut(s)	99, 181
BstAFI	CTTAAG	2 cut(s)	98, 176
BstDSI	CCRYGG	1 cut(s)	207
BstKTI	GATC	3 cut(s)	14, 160, 265
BstMBI	GATC	3 cut(s)	11, 157, 262
BtgI	CCRYGG	1 cut(s)	207
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	208, 333
CviJI	RGCY	4 cut(s)	97, 206, 219, 319
CviKI_1	RGCY	4 cut(s)	97, 206, 219, 319
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	3 cut(s)	13, 159, 264
DpnII	GATC	3 cut(s)	11, 157, 262
Eam1104I	CTCTTC	2 cut(s)	99, 181
EarI	CTCTTC	2 cut(s)	99, 181
Eco130I	CCWWGG	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	2 cut(s)	211, 336
FaiI	YATR	5 cut(s)	89, 203, 209, 259, 334
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FatI	CATG	2 cut(s)	207, 332
Fnu4HI	GCNGC	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	315
HapII	CCGG	1 cut(s)	15
Hin1II	CATG	2 cut(s)	211, 336
HpaII	CCGG	1 cut(s)	15
Hpy188I	TCNGA	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	142
Hsp92II	CATG	2 cut(s)	211, 336
Kzo9I	GATC	3 cut(s)	11, 157, 262
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	6 cut(s)	5, 28, 62, 77, 279, 324
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	3 cut(s)	13, 159, 264
MboI	GATC	3 cut(s)	11, 157, 262
MboII	GAAGA	2 cut(s)	116, 198
MluCI	AATT	1 cut(s)	140
MnlI	CCTC	4 cut(s)	100, 182, 337, 340
MseI	TTAA	2 cut(s)	99, 177
MslI	CAYNNNNRTG	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	293
MspCI	CTTAAG	2 cut(s)	98, 176
MspI	CCGG	1 cut(s)	15
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	3 cut(s)	11, 157, 262
NlaIII	CATG	2 cut(s)	211, 336
NmuCI	GTSAC	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	46
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	99, 177
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	3 cut(s)	11, 157, 262
Sau96I	GGNCC	1 cut(s)	46
SetI	ASST	4 cut(s)	24, 99, 134, 329
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	2 cut(s)	98, 176
SmoI	CTYRAG	2 cut(s)	98, 176
Sse9I	AATT	1 cut(s)	140
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	207
TaqI	TCGA	1 cut(s)	282
TasI	AATT	1 cut(s)	140
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	293
Tru1I	TTAA	2 cut(s)	99, 177
Tru9I	TTAA	2 cut(s)	99, 177
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	322
TspRI	CASTG	1 cut(s)	292
Vha464I	CTTAAG	2 cut(s)	98, 176
VpaK11BI	GGWCC	1 cut(s)	46
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.