Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007521

Physical Location & Seq

Genomic Coordinates Forward (+)

17163768 .. 17170480

Gene Structure 6713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG098400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGCAAAGAGGTATTCAACAAGGTCTGTTGGGGAGAGCTCCAAATGCTAATGACCAGCCTGAAGCTCAACATGAGGAGGTTGAACATGAGGCTGTGCAGCAGGAGGTTCAAAATGAGGAGGTGCCAACTGATAATGTGCAGCAGGAGGTTCAAAATGAAGAGGTGCCAACTGATAATAGAAGCATCCAAAGAAATCGTGCTGTTAAACAAGCTCTCAGAGCTAATATGGTCAAGGGCAAGGTTAACTCTAACTCCATCTGGCTTTTCTCTTTCAAGTACTTGCTTAGATTCCAGAATGATTTGTATACATGGGTGGAGATTTGGGGATACCTGCGTTCCCTGAAGAAGACTGCATTCTTCAAGAGTGAGATTCGGAGGAGGGTCATCCATGTTGTTTATTTGCAGATGAGCTCGGTTCTTTTACGAAAGGCTAGGAACCAGTATACTTGGAAAGGGTTTGGGGCAATCCCTAATGCTTTACAGGAGCTAAAGGAAGAGGGTCTGAAAGAGAACTTCAATACTTTCCAAGGCAATTTCCAGGGCAATGATGATCCAAAATGTTCGCAGGGTTCAGATGATGAGAAAGGTGATGAGCGTGGTCATGCAACCGGGAGTCAGAATGAGAACCCCAGTGTCAATCCCAAATCTTCAGGAAACTCAAAAAATGCAAAGTTCTCTCGACATTTAATTATTCGCATTCAGAAGACTGCTTTTAAGGACAACTCACATGTAGGTGCATTTGTCACCGAGGTATGTGTTGATGAAGATGACCAAAATTTTGTGCCACTTCTCTTCATTAATGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

269

Amino Acids

30.78

Weight (kDa)

6.62

Isoelectric Point (pI)

33.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31460 FvH4_6g31460 FvH4_6g31460
malus_domestica	MD15G1185700.v1.1
pyrus_communis	pycom09g12870
rosa_chinensis	RchiOBHm_Chr2g0085031 RchiOBHm_Chr2g0113281
rosa_laevigata	RLG00000010839 RLG00000019129 RLG00000034360 RLG00000034995
rosa_roxburghii	Rroxscaffold_1G00003470 Rroxscaffold_1G00033120 Rroxscaffold_5G00342210 Rroxscaffold_5G00342360
rosa_rugosa	Rorug04G0188100.1
rosa_samantha	Rh1AG098400 Rh1AG203700 Rh2AG396900 Rh2AG398300 Rh2AG398400 Rh2BG258800 Rh2BG310100 Rh2CG383400 Rh5BG449800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	339
AccB1I	GGYRCC	2 cut(s)	121, 163
AccI	GTMKAC	2 cut(s)	305, 443
AclWI	GGATC	1 cut(s)	545
AcsI	RAATTY	1 cut(s)	775
AcuI	CTGAAG	3 cut(s)	81, 362, 633
AfaI	GTAC	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	7 cut(s)	17, 83, 110, 152, 274, 361, 517
AjnI	CCWGG	1 cut(s)	537
AluBI	AGCT	6 cut(s)	38, 65, 212, 221, 411, 487
AluI	AGCT	6 cut(s)	38, 65, 212, 221, 411, 487
Alw21I	GWGCWC	2 cut(s)	40, 413
AlwI	GGATC	1 cut(s)	545
ApeKI	GCWGC	2 cut(s)	97, 139
ApoI	RAATTY	1 cut(s)	775
ArsI	GACNNNNNNTTYG	2 cut(s)	761, 793
AseI	ATTAAT	1 cut(s)	798
AsuC2I	CCSGG	1 cut(s)	610
AsuHPI	GGTGA	2 cut(s)	599, 736
BaeI	ACNNNNGTAYC	2 cut(s)	319, 352
BanI	GGYRCC	2 cut(s)	121, 163
BanII	GRGCYC	2 cut(s)	40, 413
BbsI	GAAGAC	2 cut(s)	353, 710
Bbv12I	GWGCWC	2 cut(s)	40, 413
BbvI	GCAGC	2 cut(s)	109, 151
BccI	CCATC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	539
BciVI	GTATCC	1 cut(s)	320
BcnI	CCSGG	1 cut(s)	610
BfaI	CTAG	1 cut(s)	432
BfuAI	ACCTGC	1 cut(s)	339
BfuI	GTATCC	1 cut(s)	320
BisI	GCNGC	2 cut(s)	98, 140
BlsI	GCNGC	2 cut(s)	99, 141
BmcAI	AGTACT	1 cut(s)	278
Bme1390I	CCNGG	2 cut(s)	539, 610
BmiI	GGNNCC	3 cut(s)	123, 165, 437
BmrFI	CCNGG	2 cut(s)	539, 610
BmrI	ACTGGG	1 cut(s)	624
BmsI	GCATC	1 cut(s)	192
BmuI	ACTGGG	1 cut(s)	624
BpiI	GAAGAC	2 cut(s)	353, 710
BpuMI	CCSGG	1 cut(s)	610
BsaJI	CCNNGG	3 cut(s)	526, 538, 747
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bse1I	ACTGG	2 cut(s)	439, 630
Bse3DI	GCAATG	1 cut(s)	550
BseBI	CCWGG	1 cut(s)	539
BseDI	CCNNGG	3 cut(s)	526, 538, 747
BseGI	GGATG	2 cut(s)	183, 384
BseMI	GCAATG	1 cut(s)	550
BseMII	CTCAG	1 cut(s)	229
BseNI	ACTGG	2 cut(s)	439, 630
BseRI	GAGGAG	3 cut(s)	89, 131, 391
BseXI	GCAGC	2 cut(s)	109, 151
BsgI	GTGCAG	2 cut(s)	116, 158
BshNI	GGYRCC	2 cut(s)	121, 163
BsiHKAI	GWGCWC	2 cut(s)	40, 413
BsiSI	CCGG	1 cut(s)	609
BsmI	GAATGC	2 cut(s)	353, 696
Bsp1286I	GDGCHC	2 cut(s)	40, 413
Bsp143I	GATC	1 cut(s)	550
BspCNI	CTCAG	1 cut(s)	228
BspLI	GGNNCC	3 cut(s)	123, 165, 437
BspMI	ACCTGC	1 cut(s)	339
BspPI	GGATC	1 cut(s)	545
BspT107I	GGYRCC	2 cut(s)	121, 163
BsrDI	GCAATG	1 cut(s)	550
BsrI	ACTGG	2 cut(s)	439, 630
BssECI	CCNNGG	3 cut(s)	526, 538, 747
BssMI	GATC	1 cut(s)	550
BssNAI	GTATAC	2 cut(s)	306, 444
BssT1I	CCWWGG	1 cut(s)	526
Bst1107I	GTATAC	2 cut(s)	306, 444
Bst2UI	CCWGG	1 cut(s)	539
Bst6I	CTCTTC	3 cut(s)	153, 489, 797
BstDEI	CTNAG	2 cut(s)	215, 284
BstF5I	GGATG	2 cut(s)	183, 384
BstKTI	GATC	1 cut(s)	553
BstMBI	GATC	1 cut(s)	550
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 218
BstNI	CCWGG	1 cut(s)	539
BstNSI	RCATGY	1 cut(s)	731
BstSCI	CCNGG	2 cut(s)	537, 608
BstV1I	GCAGC	2 cut(s)	109, 151
BstV2I	GAAGAC	2 cut(s)	353, 710
BstZ17I	GTATAC	2 cut(s)	306, 444
BsuI	GTATCC	1 cut(s)	320
BtsCI	GGATG	2 cut(s)	183, 384
BtsIMutI	CAGTG	1 cut(s)	637
BveI	ACCTGC	1 cut(s)	339
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	6 cut(s)	71, 86, 309, 389, 602, 728
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	2 cut(s)	215, 284
DpnI	GATC	1 cut(s)	552
DpnII	GATC	1 cut(s)	550
Eam1104I	CTCTTC	3 cut(s)	153, 489, 797
EarI	CTCTTC	3 cut(s)	153, 489, 797
Ecl136II	GAGCTC	2 cut(s)	38, 411
Eco130I	CCWWGG	1 cut(s)	526
Eco24I	GRGCYC	2 cut(s)	40, 413
Eco53kI	GAGCTC	2 cut(s)	38, 411
Eco57I	CTGAAG	3 cut(s)	81, 362, 633
EcoICRI	GAGCTC	2 cut(s)	38, 411
EcoRII	CCWGG	1 cut(s)	537
EcoT14I	CCWWGG	1 cut(s)	526
EcoT38I	GRGCYC	2 cut(s)	40, 413
ErhI	CCWWGG	1 cut(s)	526
FaeI	CATG	6 cut(s)	74, 89, 312, 392, 605, 731
FatI	CATG	6 cut(s)	70, 85, 308, 388, 601, 727
FblI	GTMKAC	2 cut(s)	305, 443
Fnu4HI	GCNGC	2 cut(s)	98, 140
FokI	GGATG	2 cut(s)	170, 371
FriOI	GRGCYC	2 cut(s)	40, 413
Fsp4HI	GCNGC	2 cut(s)	98, 140
FspBI	CTAG	1 cut(s)	432
GluI	GCNGC	2 cut(s)	98, 140
HapII	CCGG	1 cut(s)	609
Hin1II	CATG	6 cut(s)	74, 89, 312, 392, 605, 731
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	3 cut(s)	288, 370, 613
HpaI	GTTAAC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	609
HphI	GGTGA	2 cut(s)	599, 736
Hpy166II	GTNNAC	3 cut(s)	244, 306, 444
Hpy188I	TCNGA	6 cut(s)	218, 375, 504, 574, 618, 702
Hpy188III	TCNNGA	4 cut(s)	292, 361, 651, 678
Hpy8I	GTNNAC	3 cut(s)	244, 306, 444
HpyCH4V	TGCA	8 cut(s)	4, 97, 139, 353, 403, 605, 668, 737
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 218
HpyF3I	CTNAG	2 cut(s)	215, 284
Hsp92II	CATG	6 cut(s)	74, 89, 312, 392, 605, 731
KspAI	GTTAAC	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	550
LmnI	GCTCC	2 cut(s)	43, 484
Lsp1109I	GCAGC	2 cut(s)	109, 151
LweI	GCATC	1 cut(s)	192
MaeI	CTAG	1 cut(s)	432
MaeIII	GTNAC	1 cut(s)	742
MalI	GATC	1 cut(s)	552
MboI	GATC	1 cut(s)	550
MboII	GAAGA	9 cut(s)	170, 349, 355, 358, 506, 639, 715, 776, 784
MhlI	GDGCHC	2 cut(s)	40, 413
MluCI	AATT	4 cut(s)	532, 687, 775, 805
MlyI	GAGTC	1 cut(s)	622
MseI	TTAA	5 cut(s)	204, 243, 686, 714, 798
MslI	CAYNNNNRTG	1 cut(s)	732
MspI	CCGG	1 cut(s)	609
MspR9I	CCNGG	2 cut(s)	539, 610
Mva1269I	GAATGC	2 cut(s)	353, 696
MvaI	CCWGG	1 cut(s)	539
MwoI	GCNNNNNNNGC	2 cut(s)	44, 218
NciI	CCSGG	1 cut(s)	610
NdeII	GATC	1 cut(s)	550
NlaIII	CATG	6 cut(s)	74, 89, 312, 392, 605, 731
NlaIV	GGNNCC	3 cut(s)	123, 165, 437
NmuCI	GTSAC	1 cut(s)	742
NspI	RCATGY	1 cut(s)	731
PciI	ACATGT	1 cut(s)	727
PctI	GAATGC	2 cut(s)	353, 696
PfeI	GAWTC	2 cut(s)	288, 370
PkrI	GCNGC	2 cut(s)	99, 141
PleI	GAGTC	1 cut(s)	621
PpsI	GAGTC	1 cut(s)	621
PscI	ACATGT	1 cut(s)	727
PshBI	ATTAAT	1 cut(s)	798
Psp124BI	GAGCTC	2 cut(s)	40, 413
Psp6I	CCWGG	1 cut(s)	537
PspGI	CCWGG	1 cut(s)	537
PspN4I	GGNNCC	3 cut(s)	123, 165, 437
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	732
SacI	GAGCTC	2 cut(s)	40, 413
SaqAI	TTAA	5 cut(s)	204, 243, 686, 714, 798
SatI	GCNGC	2 cut(s)	98, 140
Sau3AI	GATC	1 cut(s)	550
ScaI	AGTACT	1 cut(s)	278
SchI	GAGTC	1 cut(s)	622
ScrFI	CCNGG	2 cut(s)	539, 610
SduI	GDGCHC	2 cut(s)	40, 413
SfaNI	GCATC	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	732
Sse9I	AATT	4 cut(s)	532, 687, 775, 805
SspMI	CTAG	1 cut(s)	432
SstI	GAGCTC	2 cut(s)	40, 413
StyD4I	CCNGG	2 cut(s)	537, 608
StyI	CCWWGG	1 cut(s)	526
TaqI	TCGA	1 cut(s)	679
TasI	AATT	4 cut(s)	532, 687, 775, 805
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	2 cut(s)	288, 370
Tru1I	TTAA	5 cut(s)	204, 243, 686, 714, 798
Tru9I	TTAA	5 cut(s)	204, 243, 686, 714, 798
TscAI	CASTG	1 cut(s)	637
TseFI	GTSAC	1 cut(s)	742
TseI	GCWGC	2 cut(s)	97, 139
Tsp45I	GTSAC	1 cut(s)	742
TspDTI	ATGAA	3 cut(s)	171, 777, 784
TspRI	CASTG	1 cut(s)	637
VspI	ATTAAT	1 cut(s)	798
XapI	RAATTY	1 cut(s)	775
XceI	RCATGY	1 cut(s)	731
XmiI	GTMKAC	2 cut(s)	305, 443
XspI	CTAG	1 cut(s)	432
ZrmI	AGTACT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.