Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007521

Physical Location & Seq

Genomic Coordinates Forward (+)

38660072 .. 38668544

Gene Structure 8473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG203700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGATTCAGCTACGACGACCATGGTGGACGTTGGTGGTGCTGGATCTGTGGCGGCTGAAGACAATGAGAAGTTTAGAATTAGGGTTCTTTTGCGAAAGGCTAGGAACCAGTATACTTGGAAAGGGTTTGGGGCAATCCCTAATGCTTTACAGGAGCTAAAGGAAGAGGGTCTGAAAGAGAACTTCAATACTTTCCAAGGCAATTTCCAGGGCAATGATGATCCAAAATGTTCGCAGGGTTCAGATGATGAGAAAGGTGATGAGCGTGGTCATGCAACCGGGAGTCAGAATGAGAACCCCAGTGTCAATCCCAAATCTTCAGGAAACTCAAAAAATGCAAAGTTCTCTCGACATTTAATTATTCGCATTCAGAAGACTGCTTTTAAGGACAACTCACATGTAGGTGCATTTGTCACCGAGGAATCGTTGTTTTCGTTTAGCTCTATCATCAAAGGCAGGGAAGAATTCAGTGCTTCTACCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

161

Amino Acids

17.7

Weight (kDa)

6.31

Isoelectric Point (pI)

19.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31460 FvH4_6g31460 FvH4_6g31460
malus_domestica	MD15G1185700.v1.1
pyrus_communis	pycom09g12870
rosa_chinensis	RchiOBHm_Chr2g0085031 RchiOBHm_Chr2g0113281
rosa_laevigata	RLG00000010839 RLG00000019129 RLG00000034360 RLG00000034995
rosa_roxburghii	Rroxscaffold_1G00003470 Rroxscaffold_1G00033120 Rroxscaffold_5G00342210 Rroxscaffold_5G00342360
rosa_rugosa	Rorug04G0188100.1
rosa_samantha	Rh1AG098400 Rh1AG203700 Rh2AG396900 Rh2AG398300 Rh2AG398400 Rh2BG258800 Rh2BG310100 Rh2CG383400 Rh5BG449800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	113
AciI	CCGC	1 cut(s)	53
AclWI	GGATC	2 cut(s)	52, 215
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	2 cut(s)	78, 303
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	3 cut(s)	11, 157, 441
AluI	AGCT	3 cut(s)	11, 157, 441
AlwI	GGATC	2 cut(s)	52, 215
ApoI	RAATTY	1 cut(s)	464
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	269, 406
BbsI	GAAGAC	2 cut(s)	66, 380
BciT130I	CCWGG	1 cut(s)	209
BcnI	CCSGG	1 cut(s)	280
BfaI	CTAG	2 cut(s)	102, 484
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	2 cut(s)	209, 280
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	2 cut(s)	209, 280
BmrI	ACTGGG	1 cut(s)	294
BmuI	ACTGGG	1 cut(s)	294
BpiI	GAAGAC	2 cut(s)	66, 380
BpuMI	CCSGG	1 cut(s)	280
BsaJI	CCNNGG	4 cut(s)	21, 196, 208, 417
Bse1I	ACTGG	2 cut(s)	109, 300
Bse3DI	GCAATG	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	4 cut(s)	21, 196, 208, 417
BseMI	GCAATG	1 cut(s)	220
BseNI	ACTGG	2 cut(s)	109, 300
BsiSI	CCGG	1 cut(s)	279
BsmI	GAATGC	1 cut(s)	366
Bsp143I	GATC	2 cut(s)	44, 220
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	107
BspPI	GGATC	2 cut(s)	52, 215
BsrDI	GCAATG	1 cut(s)	220
BsrI	ACTGG	2 cut(s)	109, 300
BssECI	CCNNGG	4 cut(s)	21, 196, 208, 417
BssMI	GATC	2 cut(s)	44, 220
BssNAI	GTATAC	1 cut(s)	114
BssT1I	CCWWGG	2 cut(s)	21, 196
Bst1107I	GTATAC	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	159
BstDSI	CCRYGG	1 cut(s)	21
BstKTI	GATC	2 cut(s)	47, 223
BstMBI	GATC	2 cut(s)	44, 220
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	2 cut(s)	207, 278
BstV2I	GAAGAC	2 cut(s)	66, 380
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BstZ17I	GTATAC	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	21
BtsIMutI	CAGTG	2 cut(s)	307, 475
CviAII	CATG	3 cut(s)	22, 272, 398
CviJI	RGCY	5 cut(s)	11, 56, 101, 157, 441
CviKI_1	RGCY	5 cut(s)	11, 56, 101, 157, 441
DpnI	GATC	2 cut(s)	46, 222
DpnII	GATC	2 cut(s)	44, 220
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	21, 196
Eco57I	CTGAAG	2 cut(s)	78, 303
EcoRI	GAATTC	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	2 cut(s)	21, 196
ErhI	CCWWGG	2 cut(s)	21, 196
FaeI	CATG	3 cut(s)	25, 275, 401
FaiI	YATR	4 cut(s)	23, 114, 273, 399
FatI	CATG	3 cut(s)	21, 271, 397
FblI	GTMKAC	1 cut(s)	113
Fnu4HI	GCNGC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	2 cut(s)	102, 484
GluI	GCNGC	1 cut(s)	54
HapII	CCGG	1 cut(s)	279
Hin1II	CATG	3 cut(s)	25, 275, 401
HinfI	GANTC	3 cut(s)	5, 283, 422
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	2 cut(s)	269, 406
Hpy166II	GTNNAC	2 cut(s)	28, 114
Hpy188I	TCNGA	4 cut(s)	174, 244, 288, 372
Hpy188III	TCNNGA	2 cut(s)	321, 348
Hpy8I	GTNNAC	2 cut(s)	28, 114
Hpy99I	CGWCG	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	3 cut(s)	275, 338, 407
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	3 cut(s)	25, 275, 401
Kzo9I	GATC	2 cut(s)	44, 220
LmnI	GCTCC	1 cut(s)	154
MaeI	CTAG	2 cut(s)	102, 484
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	2 cut(s)	46, 222
MboI	GATC	2 cut(s)	44, 220
MboII	GAAGA	5 cut(s)	71, 176, 309, 385, 473
MflI	RGATCY	1 cut(s)	44
MluCI	AATT	4 cut(s)	78, 202, 357, 464
MlyI	GAGTC	1 cut(s)	292
MnlI	CCTC	2 cut(s)	160, 412
MseI	TTAA	2 cut(s)	356, 384
MslI	CAYNNNNRTG	1 cut(s)	402
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	2 cut(s)	209, 280
Mva1269I	GAATGC	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	209
NciI	CCSGG	1 cut(s)	280
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	2 cut(s)	44, 220
NlaIII	CATG	3 cut(s)	25, 275, 401
NlaIV	GGNNCC	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	412
NspI	RCATGY	1 cut(s)	401
PciI	ACATGT	1 cut(s)	397
PcsI	WCGNNNNNNNCGW	1 cut(s)	431
PctI	GAATGC	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	5, 422
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
PscI	ACATGT	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	2 cut(s)	356, 384
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	2 cut(s)	44, 220
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	2 cut(s)	209, 280
SetI	ASST	7 cut(s)	13, 33, 159, 259, 406, 443, 482
SmiMI	CAYNNNNRTG	1 cut(s)	402
Sse9I	AATT	4 cut(s)	78, 202, 357, 464
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	2 cut(s)	102, 484
StyD4I	CCNGG	2 cut(s)	207, 278
StyI	CCWWGG	2 cut(s)	21, 196
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	349
TasI	AATT	4 cut(s)	78, 202, 357, 464
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	5, 422
Tru1I	TTAA	2 cut(s)	356, 384
Tru9I	TTAA	2 cut(s)	356, 384
TscAI	CASTG	2 cut(s)	307, 475
TseFI	GTSAC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	412
TspRI	CASTG	2 cut(s)	307, 475
XapI	RAATTY	1 cut(s)	464
XceI	RCATGY	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	113
XspI	CTAG	2 cut(s)	102, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.