Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007521

Physical Location & Seq

Genomic Coordinates Forward (+)

4249112 .. 4273407

Gene Structure 24296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00003470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGAAACCATTGCCTCTAAAAGCATCACGGGACATCTTGAGGTTGATGCACCATACGTACCGCAGTCAGGGATTTAAGTTGTTTGTAAGCTTCTTTGAAATATATGGAGGAAAACTTTTTGATCTGCTCAATGAGCGCAAAAAGCTTTGCATGAGAGAAGATGGTAAGCAACAAGTTTGTATTGTGGTTTGCAAGAATACAAAGTGTCTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005886 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007080 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0008283 GO:0008608 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019237 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0022411 GO:0030951 GO:0030952 GO:0031109 GO:0032984 GO:0032991 GO:0035371 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048002 GO:0048193 GO:0048285 GO:0050000 GO:0050789 GO:0050794 GO:0051010 GO:0051179 GO:0051234 GO:0051261 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051983 GO:0065007 GO:0071840 GO:0071944 GO:0097159 GO:0097435 GO:0098687 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1901363 GO:1902850 GO:1903047 GO:1903338 GO:1990752 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

71

Amino Acids

8.4

Weight (kDa)

9.7

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	7 - 65	5.5e-08	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31460 FvH4_6g31460 FvH4_6g31460
malus_domestica	MD15G1185700.v1.1
pyrus_communis	pycom09g12870
rosa_chinensis	RchiOBHm_Chr2g0085031 RchiOBHm_Chr2g0113281
rosa_laevigata	RLG00000010839 RLG00000019129 RLG00000034360 RLG00000034995
rosa_roxburghii	Rroxscaffold_1G00003470 Rroxscaffold_1G00033120 Rroxscaffold_5G00342210 Rroxscaffold_5G00342360
rosa_rugosa	Rorug04G0188100.1
rosa_samantha	Rh1AG098400 Rh1AG203700 Rh2AG396900 Rh2AG398300 Rh2AG398400 Rh2BG258800 Rh2BG310100 Rh2CG383400 Rh5BG449800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	61
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	98
AluBI	AGCT	2 cut(s)	90, 145
AluI	AGCT	2 cut(s)	90, 145
AspLEI	GCGC	1 cut(s)	138
BccI	CCATC	1 cut(s)	155
BmsI	GCATC	2 cut(s)	32, 36
BpuEI	CTTGAG	1 cut(s)	58
BsaAI	YACGTR	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse3DI	GCAATG	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	8
BssMI	GATC	1 cut(s)	121
BstBAI	YACGTR	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 142
BstSNI	TACGTA	1 cut(s)	57
CfoI	GCGC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	2 cut(s)	90, 145
CviKI_1	RGCY	2 cut(s)	90, 145
CviQI	GTAC	1 cut(s)	58
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eco105I	TACGTA	1 cut(s)	57
FaeI	CATG	1 cut(s)	154
FaiI	YATR	4 cut(s)	54, 103, 105, 152
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	1 cut(s)	150
GlaI	GCGC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	1 cut(s)	154
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HindIII	AAGCTT	2 cut(s)	88, 143
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	3 cut(s)	49, 150, 192
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 142
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	1 cut(s)	154
HspAI	GCGC	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	121
LpnPI	CCDG	1 cut(s)	53
LweI	GCATC	2 cut(s)	32, 36
MaeII	ACGT	1 cut(s)	56
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	1 cut(s)	170
MnlI	CCTC	3 cut(s)	24, 33, 101
MseI	TTAA	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	133, 142
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	1 cut(s)	154
Ppu21I	YACGTR	1 cut(s)	57
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
SaqAI	TTAA	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	121
SetI	ASST	4 cut(s)	44, 59, 92, 147
SfaNI	GCATC	2 cut(s)	32, 36
SgeI	CNNG	7 cut(s)	39, 41, 49, 80, 163, 185, 205
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
SnaBI	TACGTA	1 cut(s)	57
SsiI	CCGC	1 cut(s)	61
TaiI	ACGT	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.