Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007521

Physical Location & Seq

Genomic Coordinates Forward (+)

11215317 .. 11216283

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00342360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGAAAGGCGGATGATCTACGATATCATTAATGTCCTCGAGAGTGTTGGGGTTCTTGCGCGGAAGGAAAAGAATCAGTATTCTTGGAAAGGATTTGGGGCAATCTCTAATCCTATACGGGAGCTTAAGGTAGAATACACCTCCCTTGATGAAGCTACAAGGTTATTACTTGGGGATGCAGAGACAATGCATTTTGTTGCCGAGTTGGCAGAACTAGGACTGGTACCACATGTCATCACACTCGATGAAGGGTTTCGGGTATTGTTGGGATATCAAGGACAAACAGTTTTGAACAATTTAGAGTCTCTGTGTTTTGGTGCTATATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

109

Amino Acids

12.31

Weight (kDa)

4.94

Isoelectric Point (pI)

19.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	2 - 31	1.8e-09	E2F/DP family winged-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31460 FvH4_6g31460 FvH4_6g31460
malus_domestica	MD15G1185700.v1.1
pyrus_communis	pycom09g12870
rosa_chinensis	RchiOBHm_Chr2g0085031 RchiOBHm_Chr2g0113281
rosa_laevigata	RLG00000010839 RLG00000019129 RLG00000034360 RLG00000034995
rosa_roxburghii	Rroxscaffold_1G00003470 Rroxscaffold_1G00033120 Rroxscaffold_5G00342210 Rroxscaffold_5G00342360
rosa_rugosa	Rorug04G0188100.1
rosa_samantha	Rh1AG098400 Rh1AG203700 Rh2AG396900 Rh2AG398300 Rh2AG398400 Rh2BG258800 Rh2BG310100 Rh2CG383400 Rh5BG449800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	223
AccII	CGCG	1 cut(s)	61
AciI	CCGC	2 cut(s)	10, 61
AfaI	GTAC	1 cut(s)	225
AflII	CTTAAG	1 cut(s)	125
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	292
AluBI	AGCT	2 cut(s)	124, 155
AluI	AGCT	2 cut(s)	124, 155
Alw26I	GTCTC	2 cut(s)	176, 309
Ama87I	CYCGRG	1 cut(s)	38
AseI	ATTAAT	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	252
Asp718I	GGTACC	1 cut(s)	223
AspLEI	GCGC	1 cut(s)	61
AvaI	CYCGRG	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	223
BcoDI	GTCTC	2 cut(s)	176, 309
BfaI	CTAG	1 cut(s)	215
BfrI	CTTAAG	1 cut(s)	125
BglI	GCCNNNNNGGC	1 cut(s)	206
BmeT110I	CYCGRG	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	225
BmsI	GCATC	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	18, 181
BseNI	ACTGG	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	61
BshNI	GGYRCC	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	38
BsmAI	GTCTC	2 cut(s)	176, 309
BsoBI	CYCGRG	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	15
BspACI	CCGC	2 cut(s)	10, 61
BspFNI	CGCG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	223
BspTI	CTTAAG	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	225
BssMI	GATC	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	286
BstAFI	CTTAAG	1 cut(s)	125
BstF5I	GGATG	2 cut(s)	18, 181
BstFNI	CGCG	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	1 cut(s)	18
BstMAI	GTCTC	2 cut(s)	176, 309
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNSI	RCATGY	1 cut(s)	233
BstUI	CGCG	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	18, 181
CfoI	GCGC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	2 cut(s)	124, 155
CviKI_1	RGCY	2 cut(s)	124, 155
CviQI	GTAC	1 cut(s)	224
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
EciI	GGCGGA	1 cut(s)	25
Eco32I	GATATC	2 cut(s)	25, 272
Eco88I	CYCGRG	1 cut(s)	38
EcoRV	GATATC	2 cut(s)	25, 272
EcoT22I	ATGCAT	1 cut(s)	192
FaeI	CATG	1 cut(s)	233
FaiI	YATR	4 cut(s)	116, 231, 323, 325
FatI	CATG	1 cut(s)	229
FokI	GGATG	2 cut(s)	25, 188
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	1 cut(s)	60
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	1 cut(s)	233
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HinfI	GANTC	2 cut(s)	73, 302
Hpy188III	TCNNGA	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	58, 242
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	2 cut(s)	179, 190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
Hsp92II	CATG	1 cut(s)	233
HspAI	GCGC	1 cut(s)	59
KpnI	GGTACC	1 cut(s)	227
Kzo9I	GATC	1 cut(s)	15
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	1 cut(s)	206
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	215
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MluCI	AATT	1 cut(s)	295
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	2 cut(s)	47, 151
Mph1103I	ATGCAT	1 cut(s)	192
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	2 cut(s)	30, 126
MspCI	CTTAAG	1 cut(s)	125
MvnI	CGCG	1 cut(s)	61
MwoI	GCNNNNNNNGC	1 cut(s)	206
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	1 cut(s)	225
NmeAIII	GCCGAG	1 cut(s)	226
NsiI	ATGCAT	1 cut(s)	192
NspI	RCATGY	1 cut(s)	233
PaeR7I	CTCGAG	1 cut(s)	38
PciI	ACATGT	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	73
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PscI	ACATGT	1 cut(s)	229
PshBI	ATTAAT	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	225
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	30, 126
Sau3AI	GATC	1 cut(s)	15
SchI	GAGTC	1 cut(s)	311
SetI	ASST	5 cut(s)	126, 132, 143, 157, 164
SfaNI	GCATC	1 cut(s)	166
Sfr274I	CTCGAG	1 cut(s)	38
SlaI	CTCGAG	1 cut(s)	38
SmlI	CTYRAG	2 cut(s)	38, 125
SmoI	CTYRAG	2 cut(s)	38, 125
Sse9I	AATT	1 cut(s)	295
SsiI	CCGC	2 cut(s)	10, 61
SspMI	CTAG	1 cut(s)	215
TaaI	ACNGT	1 cut(s)	286
TaqI	TCGA	2 cut(s)	39, 243
TasI	AATT	1 cut(s)	295
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	2 cut(s)	30, 126
Tru9I	TTAA	2 cut(s)	30, 126
TspDTI	ATGAA	2 cut(s)	165, 261
Vha464I	CTTAAG	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	30
XceI	RCATGY	1 cut(s)	233
XhoI	CTCGAG	1 cut(s)	38
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	1 cut(s)	215
Zsp2I	ATGCAT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.