Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007521

Physical Location & Seq

Genomic Coordinates Reverse (-)

58787263 .. 58787829

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034995

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAAACCATTGCCTCTAAAAGCATCACGGGACATCTTGAGGTTGATGCACCATACTTACCGCAATCAGGGATTTCAGTTGTTTGTAAGCTTCTTGGAAATACATGGAGGAAAACTTTTTGATCTCCTCAATGAGCGCAAAAAGCTTTGCATGAGAGAAGATGGTAAGCAACAAGTTTGTATTGTGGGTTTGCAAGAATATAGTGTGTCTGATGCAGAGACAATTAAAGAGCTTCTTGAGAAAGGAAGTGCCACAATAAGTACTGGTACCACTGGTGCAAATGAAGAATCCTCTCGCTCACATGCCGTACTTCAGCTTGCTATCAAGAGGGTAGTTGATGGCAATGTATCAAAGCCTCCCCGTCTTGTTGGTAAACTCTCCTTTATAGATCTTGCTGGAAGTGAACGTGGTGCAGATACTACAGATAATGACAAACAGACAAGGTATAATTTCACCCTTCGATTTATTATATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0065007 GO:0071944 GO:1903338

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

159

Amino Acids

17.7

Weight (kDa)

9.14

Isoelectric Point (pI)

29.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	8 - 147	1.7e-33	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31460 FvH4_6g31460 FvH4_6g31460
malus_domestica	MD15G1185700.v1.1
pyrus_communis	pycom09g12870
rosa_chinensis	RchiOBHm_Chr2g0085031 RchiOBHm_Chr2g0113281
rosa_laevigata	RLG00000010839 RLG00000019129 RLG00000034360 RLG00000034995
rosa_roxburghii	Rroxscaffold_1G00003470 Rroxscaffold_1G00033120 Rroxscaffold_5G00342210 Rroxscaffold_5G00342360
rosa_rugosa	Rorug04G0188100.1
rosa_samantha	Rh1AG098400 Rh1AG203700 Rh2AG396900 Rh2AG398300 Rh2AG398400 Rh2BG258800 Rh2BG310100 Rh2CG383400 Rh5BG449800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	266
AccB1I	GGYRCC	1 cut(s)	266
AciI	CCGC	1 cut(s)	61
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	3 cut(s)	262, 268, 309
AfiI	CCNNNNNNNGG	1 cut(s)	67
AluBI	AGCT	4 cut(s)	90, 145, 232, 316
AluI	AGCT	4 cut(s)	90, 145, 232, 316
Alw26I	GTCTC	1 cut(s)	212
Asp718I	GGTACC	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	445
BanI	GGYRCC	1 cut(s)	266
BccI	CCATC	2 cut(s)	155, 332
BceAI	ACGGC	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	420
BglII	AGATCT	1 cut(s)	388
BmcAI	AGTACT	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	268
BmsI	GCATC	3 cut(s)	32, 36, 202
BpuEI	CTTGAG	2 cut(s)	58, 257
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	2 cut(s)	268, 277
Bse3DI	GCAATG	2 cut(s)	8, 349
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	2 cut(s)	8, 349
BseNI	ACTGG	2 cut(s)	268, 277
BseRI	GAGGAG	1 cut(s)	116
BsgI	GTGCAG	1 cut(s)	432
BshNI	GGYRCC	1 cut(s)	266
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	121, 388
BspACI	CCGC	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	268
BspT107I	GGYRCC	1 cut(s)	266
BsrDI	GCAATG	2 cut(s)	8, 349
BsrI	ACTGG	2 cut(s)	268, 277
BssMI	GATC	2 cut(s)	121, 388
BstC8I	GCNNGC	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	2 cut(s)	124, 391
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	2 cut(s)	121, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	305
BstSFI	CTRYAG	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	318
CfoI	GCGC	1 cut(s)	138
Csp6I	GTAC	3 cut(s)	261, 267, 308
CviAII	CATG	3 cut(s)	104, 151, 302
CviJI	RGCY	5 cut(s)	90, 145, 232, 316, 355
CviKI_1	RGCY	5 cut(s)	90, 145, 232, 316, 355
CviQI	GTAC	3 cut(s)	261, 267, 308
DpnI	GATC	2 cut(s)	123, 390
DpnII	GATC	2 cut(s)	121, 388
Eco57I	CTGAAG	1 cut(s)	296
FaeI	CATG	3 cut(s)	107, 154, 305
FaiI	YATR	9 cut(s)	54, 105, 152, 201, 303, 386, 447, 470, 475
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	3 cut(s)	103, 150, 301
GlaI	GCGC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	3 cut(s)	107, 154, 305
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HindIII	AAGCTT	2 cut(s)	88, 143
HinfI	GANTC	1 cut(s)	287
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	2 cut(s)	374, 404
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	3 cut(s)	37, 236, 325
Hpy8I	GTNNAC	2 cut(s)	374, 404
HpyAV	CCTTC	1 cut(s)	467
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	6 cut(s)	49, 150, 193, 215, 278, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	3 cut(s)	107, 154, 305
HspAI	GCGC	1 cut(s)	136
KpnI	GGTACC	1 cut(s)	270
Kzo9I	GATC	2 cut(s)	121, 388
LpnPI	CCDG	4 cut(s)	53, 249, 258, 381
LweI	GCATC	3 cut(s)	32, 36, 202
MaeII	ACGT	1 cut(s)	406
MalI	GATC	2 cut(s)	123, 390
MboI	GATC	2 cut(s)	121, 388
MboII	GAAGA	2 cut(s)	170, 296
MflI	RGATCY	1 cut(s)	388
MluCI	AATT	2 cut(s)	222, 448
MnlI	CCTC	7 cut(s)	24, 33, 101, 137, 301, 321, 366
MseI	TTAA	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	142
NdeII	GATC	2 cut(s)	121, 388
NlaIII	CATG	3 cut(s)	107, 154, 305
NlaIV	GGNNCC	1 cut(s)	268
NspI	RCATGY	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	3 cut(s)	262, 268, 309
RsaNI	GTAC	3 cut(s)	261, 267, 308
SaqAI	TTAA	1 cut(s)	225
Sau3AI	GATC	2 cut(s)	121, 388
ScaI	AGTACT	1 cut(s)	262
SetI	ASST	7 cut(s)	44, 92, 147, 234, 318, 409, 446
SfaNI	GCATC	3 cut(s)	32, 36, 202
SfcI	CTRYAG	1 cut(s)	420
SmlI	CTYRAG	2 cut(s)	37, 236
SmoI	CTYRAG	2 cut(s)	37, 236
Sse9I	AATT	2 cut(s)	222, 448
SsiI	CCGC	1 cut(s)	61
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	460
TasI	AATT	2 cut(s)	222, 448
TatI	WGTACW	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	17, 297
TspRI	CASTG	1 cut(s)	277
XceI	RCATGY	1 cut(s)	305
ZrmI	AGTACT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.