Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007521

Physical Location & Seq

Genomic Coordinates Reverse (-)

27306832 .. 27308955

Gene Structure 2124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG258800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACTCCCATCTCCATCAACATTAATTTTGGAACAAAGTTTACTTGTTCTATGAGTTTCATTGCCCTGTACGATCATCAAGGCGTAACCTCCGTCGGCCTAGACGACGCCGATTCAAGATTACGCTATTATATTTATGTAATCTCTGACATTTCCGCAAAGAATCAGTATTCTTGGAAAGGATCTGGGGCAATCTCTACTGCTATACAGGAGCTGAAGGAAATGGGTCTGAAAGAGAACTTCAATACTTTCCATGGCAATTTTCCGCCAATAATGATCCAAAAAACTAGGGCTGGCACCACATGTCATCACACTCAGATGAAGGGTTTTGGGTATTGTTGGGATATCAAGCTTGTTGGAGGAGTGAATATGGTCCAACAGACTATTATGCTTGCAAAGTGGCCACACATTTTTGTACTTAATACTGTTATATTCCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

146

Amino Acids

16.45

Weight (kDa)

8.79

Isoelectric Point (pI)

21.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31460 FvH4_6g31460 FvH4_6g31460
malus_domestica	MD15G1185700.v1.1
pyrus_communis	pycom09g12870
rosa_chinensis	RchiOBHm_Chr2g0085031 RchiOBHm_Chr2g0113281
rosa_laevigata	RLG00000010839 RLG00000019129 RLG00000034360 RLG00000034995
rosa_roxburghii	Rroxscaffold_1G00003470 Rroxscaffold_1G00033120 Rroxscaffold_5G00342210 Rroxscaffold_5G00342360
rosa_rugosa	Rorug04G0188100.1
rosa_samantha	Rh1AG098400 Rh1AG203700 Rh2AG396900 Rh2AG398300 Rh2AG398400 Rh2BG258800 Rh2BG310100 Rh2CG383400 Rh5BG449800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	296
AciI	CCGC	2 cut(s)	156, 266
AclWI	GGATC	2 cut(s)	190, 271
AcoI	YGGCCR	1 cut(s)	401
AcuI	CTGAAG	1 cut(s)	236
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	2 cut(s)	71, 417
AflIII	ACRYGT	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	117, 244
AluBI	AGCT	2 cut(s)	214, 352
AluI	AGCT	2 cut(s)	214, 352
AlwI	GGATC	2 cut(s)	190, 271
AlwNI	CAGNNNCTG	1 cut(s)	214
AoxI	GGCC	2 cut(s)	97, 401
AseI	ATTAAT	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	373
BalI	TGGCCA	1 cut(s)	403
BanI	GGYRCC	1 cut(s)	296
BccI	CCATC	2 cut(s)	17, 23
BfaI	CTAG	2 cut(s)	101, 288
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	1 cut(s)	298
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	253
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	375
BshFI	GGCC	2 cut(s)	99, 403
BshNI	GGYRCC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	99, 403
Bsp143I	GATC	3 cut(s)	73, 182, 276
Bsp19I	CCATGG	1 cut(s)	253
BspACI	CCGC	2 cut(s)	156, 266
BspANI	GGCC	2 cut(s)	99, 403
BspCNI	CTCAG	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	298
BspPI	GGATC	2 cut(s)	190, 271
BspT107I	GGYRCC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	3 cut(s)	73, 182, 276
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	427
BstACI	GRCGYC	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	295, 393
BstDEI	CTNAG	1 cut(s)	315
BstDSI	CCRYGG	1 cut(s)	253
BstKTI	GATC	3 cut(s)	76, 185, 279
BstMBI	GATC	3 cut(s)	73, 182, 276
BstNSI	RCATGY	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BsuRI	GGCC	2 cut(s)	99, 403
BtgI	CCRYGG	1 cut(s)	253
Cac8I	GCNNGC	2 cut(s)	295, 393
CaiI	CAGNNNCTG	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	373
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	2 cut(s)	70, 416
CviAII	CATG	2 cut(s)	254, 303
CviJI	RGCY	5 cut(s)	99, 214, 293, 352, 403
CviKI_1	RGCY	5 cut(s)	99, 214, 293, 352, 403
CviQI	GTAC	2 cut(s)	70, 416
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	3 cut(s)	75, 184, 278
DpnII	GATC	3 cut(s)	73, 182, 276
EaeI	YGGCCR	1 cut(s)	401
EciI	GGCGGA	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	253
Eco32I	GATATC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	236
EcoRV	GATATC	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	2 cut(s)	257, 306
FaiI	YATR	9 cut(s)	53, 132, 138, 206, 255, 304, 371, 389, 431
FatI	CATG	2 cut(s)	253, 302
FspBI	CTAG	2 cut(s)	101, 288
HaeIII	GGCC	2 cut(s)	99, 403
HgaI	GACGC	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	257, 306
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	3 cut(s)	4, 113, 163
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	3 cut(s)	148, 231, 318
Hpy188III	TCNNGA	1 cut(s)	117
Hpy8I	GTNNAC	1 cut(s)	42
Hpy99I	CGWCG	2 cut(s)	98, 110
HpyAV	CCTTC	2 cut(s)	211, 316
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4V	TGCA	1 cut(s)	395
HpyF3I	CTNAG	1 cut(s)	315
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	257, 306
Kzo9I	GATC	3 cut(s)	73, 182, 276
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	4 cut(s)	80, 171, 194, 279
MaeI	CTAG	2 cut(s)	101, 288
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	3 cut(s)	75, 184, 278
MboI	GATC	3 cut(s)	73, 182, 276
MflI	RGATCY	1 cut(s)	182
MlsI	TGGCCA	1 cut(s)	403
MluCI	AATT	2 cut(s)	25, 259
MluNI	TGGCCA	1 cut(s)	403
MmeI	TCCRAC	2 cut(s)	337, 400
MnlI	CCTC	2 cut(s)	100, 353
Mox20I	TGGCCA	1 cut(s)	403
MscI	TGGCCA	1 cut(s)	403
MseI	TTAA	2 cut(s)	24, 420
MslI	CAYNNNNRTG	1 cut(s)	317
Msp20I	TGGCCA	1 cut(s)	403
NcoI	CCATGG	1 cut(s)	253
NdeII	GATC	3 cut(s)	73, 182, 276
NlaIII	CATG	2 cut(s)	257, 306
NlaIV	GGNNCC	1 cut(s)	298
NspI	RCATGY	1 cut(s)	306
PciI	ACATGT	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	113, 163
PscI	ACATGT	1 cut(s)	302
PshBI	ATTAAT	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	373
PsrI	GAACNNNNNNTAC	2 cut(s)	25, 57
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	182
RsaI	GTAC	2 cut(s)	71, 417
RsaNI	GTAC	2 cut(s)	70, 416
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	2 cut(s)	24, 420
Sau3AI	GATC	3 cut(s)	73, 182, 276
Sau96I	GGNCC	1 cut(s)	373
SetI	ASST	3 cut(s)	92, 216, 354
SinI	GGWCC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	317
Sse9I	AATT	2 cut(s)	25, 259
SsiI	CCGC	2 cut(s)	156, 266
SspMI	CTAG	2 cut(s)	101, 288
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	427
TasI	AATT	2 cut(s)	25, 259
TatI	WGTACW	1 cut(s)	415
TfiI	GAWTC	2 cut(s)	113, 163
Tru1I	TTAA	2 cut(s)	24, 420
Tru9I	TTAA	2 cut(s)	24, 420
TspDTI	ATGAA	2 cut(s)	49, 335
TspGWI	ACGGA	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	373
VspI	ATTAAT	1 cut(s)	24
XceI	RCATGY	1 cut(s)	306
XspI	CTAG	2 cut(s)	101, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.