Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007521

Physical Location & Seq

Genomic Coordinates Forward (+)

10999026 .. 11000972

Gene Structure 1947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00342210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAAAGGCGGATGATCTATGATATTGTTAATGTCCTCGAGAGTGTTGGGGCAAAGAATCAGTATTCTTGGAAAGGATTTGGGGCAATCTCTAATGCTATACAGGAGCTTAAGAAGGGGATCGAAAGAGAACTTCAATACTTTCAATGGCAATTTTCCGGCAATAATGATCCAAAAGTACTAGGATGGCACCACATGTCATCACACTCGGATGAAGGGTTTTCGGGTATTGTTGGGATATCAAGATGCAATTTCAGCTTAGATGGAATAGGAAGAGTGGTTGAGTTGCTAGAAGCTTCGAAGCCATGGCCCAAGACAACCAGCCAATTCCACTGCGAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

114

Amino Acids

12.98

Weight (kDa)

6.41

Isoelectric Point (pI)

24.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31460 FvH4_6g31460 FvH4_6g31460
malus_domestica	MD15G1185700.v1.1
pyrus_communis	pycom09g12870
rosa_chinensis	RchiOBHm_Chr2g0085031 RchiOBHm_Chr2g0113281
rosa_laevigata	RLG00000010839 RLG00000019129 RLG00000034360 RLG00000034995
rosa_roxburghii	Rroxscaffold_1G00003470 Rroxscaffold_1G00033120 Rroxscaffold_5G00342210 Rroxscaffold_5G00342360
rosa_rugosa	Rorug04G0188100.1
rosa_samantha	Rh1AG098400 Rh1AG203700 Rh2AG396900 Rh2AG398300 Rh2AG398400 Rh2BG258800 Rh2BG310100 Rh2CG383400 Rh5BG449800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	189
AciI	CCGC	1 cut(s)	10
AclWI	GGATC	2 cut(s)	128, 164
AfaI	GTAC	1 cut(s)	180
AflII	CTTAAG	1 cut(s)	110
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	2 cut(s)	137, 146
AluBI	AGCT	3 cut(s)	109, 258, 296
AluI	AGCT	3 cut(s)	109, 258, 296
AlwI	GGATC	2 cut(s)	128, 164
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	309
AsuII	TTCGAA	1 cut(s)	299
AvaI	CYCGRG	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	189
BccI	CCATC	2 cut(s)	180, 257
BfaI	CTAG	2 cut(s)	182, 290
BfrI	CTTAAG	1 cut(s)	110
BmcAI	AGTACT	1 cut(s)	180
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	309
BmiI	GGNNCC	1 cut(s)	191
BmsI	GCATC	1 cut(s)	236
Bpu14I	TTCGAA	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	305
BseGI	GGATG	3 cut(s)	18, 191, 217
BshFI	GGCC	1 cut(s)	310
BshNI	GGYRCC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	159
BsnI	GGCC	1 cut(s)	310
BsoBI	CYCGRG	1 cut(s)	38
Bsp119I	TTCGAA	1 cut(s)	299
Bsp143I	GATC	3 cut(s)	15, 120, 169
Bsp19I	CCATGG	1 cut(s)	305
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	191
BspPI	GGATC	2 cut(s)	128, 164
BspT104I	TTCGAA	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	189
BspTI	CTTAAG	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	305
BssMI	GATC	3 cut(s)	15, 120, 169
BssT1I	CCWWGG	1 cut(s)	305
Bst6I	CTCTTC	1 cut(s)	268
BstAFI	CTTAAG	1 cut(s)	110
BstBI	TTCGAA	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	1 cut(s)	259
BstDSI	CCRYGG	1 cut(s)	305
BstF5I	GGATG	3 cut(s)	18, 191, 217
BstKTI	GATC	3 cut(s)	18, 123, 172
BstMBI	GATC	3 cut(s)	15, 120, 169
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstNSI	RCATGY	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	310
BtgI	CCRYGG	1 cut(s)	305
BtsCI	GGATG	3 cut(s)	18, 191, 217
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	179
CviAII	CATG	3 cut(s)	196, 306, 342
CviJI	RGCY	7 cut(s)	109, 258, 296, 304, 310, 324, 340
CviKI_1	RGCY	7 cut(s)	109, 258, 296, 304, 310, 324, 340
CviQI	GTAC	1 cut(s)	179
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	3 cut(s)	17, 122, 171
DpnII	GATC	3 cut(s)	15, 120, 169
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
EciI	GGCGGA	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	305
Eco32I	GATATC	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	38
EcoRV	GATATC	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	305
FaeI	CATG	3 cut(s)	199, 309, 345
FaiI	YATR	5 cut(s)	21, 101, 197, 307, 343
FatI	CATG	3 cut(s)	195, 305, 341
FokI	GGATG	3 cut(s)	25, 198, 224
FspBI	CTAG	2 cut(s)	182, 290
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	3 cut(s)	199, 309, 345
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	1 cut(s)	159
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	2 cut(s)	40, 243
HpyAV	CCTTC	2 cut(s)	109, 209
HpyCH4V	TGCA	1 cut(s)	249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	1 cut(s)	259
Hsp92II	CATG	3 cut(s)	199, 309, 345
Kzo9I	GATC	3 cut(s)	15, 120, 169
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	3 cut(s)	89, 172, 334
LweI	GCATC	1 cut(s)	236
MaeI	CTAG	2 cut(s)	182, 290
MalI	GATC	3 cut(s)	17, 122, 171
MboI	GATC	3 cut(s)	15, 120, 169
MboII	GAAGA	1 cut(s)	285
MluCI	AATT	3 cut(s)	152, 250, 326
MnlI	CCTC	1 cut(s)	47
MseI	TTAA	2 cut(s)	30, 111
MslI	CAYNNNNRTG	1 cut(s)	210
MspCI	CTTAAG	1 cut(s)	110
MspI	CCGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	255
NcoI	CCATGG	1 cut(s)	305
NdeII	GATC	3 cut(s)	15, 120, 169
NlaIII	CATG	3 cut(s)	199, 309, 345
NlaIV	GGNNCC	1 cut(s)	191
NspI	RCATGY	1 cut(s)	199
NspV	TTCGAA	1 cut(s)	299
PaeR7I	CTCGAG	1 cut(s)	38
PciI	ACATGT	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	58
PscI	ACATGT	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	1 cut(s)	309
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	30, 111
Sau3AI	GATC	3 cut(s)	15, 120, 169
Sau96I	GGNCC	1 cut(s)	309
ScaI	AGTACT	1 cut(s)	180
SetI	ASST	3 cut(s)	111, 260, 298
SfaNI	GCATC	1 cut(s)	236
Sfr274I	CTCGAG	1 cut(s)	38
SfuI	TTCGAA	1 cut(s)	299
SlaI	CTCGAG	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	2 cut(s)	38, 110
SmoI	CTYRAG	2 cut(s)	38, 110
Sse9I	AATT	3 cut(s)	152, 250, 326
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	2 cut(s)	182, 290
StyI	CCWWGG	1 cut(s)	305
TaqI	TCGA	3 cut(s)	39, 123, 299
TasI	AATT	3 cut(s)	152, 250, 326
TatI	WGTACW	1 cut(s)	178
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	2 cut(s)	30, 111
Tru9I	TTAA	2 cut(s)	30, 111
TscAI	CASTG	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	1 cut(s)	338
Vha464I	CTTAAG	1 cut(s)	110
XceI	RCATGY	1 cut(s)	199
XhoI	CTCGAG	1 cut(s)	38
XspI	CTAG	2 cut(s)	182, 290
ZrmI	AGTACT	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.