Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007521

Physical Location & Seq

Genomic Coordinates Forward (+)

59468011 .. 59470268

Gene Structure 2258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG398300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAACGGGGTAGGGAGGCAGGGGCAGAGATCTGGTGCGCCGCACCACCAGCGGCAATACTCGGATAACTTCTTGGAGACTTCGTCCAATGGGAGATGGCTTCAGTCTGCTGGTCTTCAACATCTTCACTCCAACTCATCTATCCCTCCTCCTTCTCAGGACTATGGTTACTATGGTGGAGGTGGTGGCGGAGGAGGAGGAGGACAGGGTTCTAGAATGTATCGGAATGGGCAGAGAGGGTATAATGAGTACTACATGGAGCCATCGACACCTCCCTATGATTCGCGGAGGAAGGACCGCGAGGACTCCCCCAATGAGTTTAGTCCTGGACTCCTGGATCTGCATTCCTTTGATACTGAGCTCATTCCTGACATGCCAGTCTCTGGAATGCATGATGTTGCTTCTCAATATTATCCTTCTCGGGGCAGAAGCTTTGATGATTCTGAACCTTATATTAACAACAAGCAAGCAGAAAGGGCTCGGTTACCAGAAAACAACCTCCTGAAAAGTTTTGCAGCAGACAAAGAGAAAGCAAGTTCTGTAGCAAAGATTAAAGTTGTGGTGCGCAAGAGACCACTTAACAAAAAGGAATTGGCAAAGAATGAGGAAGACATAATAGACACACTTTCCAACTCTGTAACAGTTCATGAGACTAAGCTCAAGGTAACTGCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005886 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007049 GO:0007059 GO:0007080 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0008283 GO:0008608 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019237 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0022411 GO:0030951 GO:0030952 GO:0031109 GO:0032984 GO:0032991 GO:0035371 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048002 GO:0048193 GO:0048285 GO:0050000 GO:0050789 GO:0050794 GO:0051010 GO:0051179 GO:0051234 GO:0051261 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051983 GO:0065007 GO:0071840 GO:0071944 GO:0097159 GO:0097435 GO:0098687 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1901363 GO:1903047 GO:1903338 GO:1990752 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

225

Amino Acids

25.01

Weight (kDa)

7.9

Isoelectric Point (pI)

64.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31460 FvH4_6g31460 FvH4_6g31460
malus_domestica	MD15G1185700.v1.1
pyrus_communis	pycom09g12870
rosa_chinensis	RchiOBHm_Chr2g0085031 RchiOBHm_Chr2g0113281
rosa_laevigata	RLG00000010839 RLG00000019129 RLG00000034360 RLG00000034995
rosa_roxburghii	Rroxscaffold_1G00003470 Rroxscaffold_1G00033120 Rroxscaffold_5G00342210 Rroxscaffold_5G00342360
rosa_rugosa	Rorug04G0188100.1
rosa_samantha	Rh1AG098400 Rh1AG203700 Rh2AG396900 Rh2AG398300 Rh2AG398400 Rh2BG258800 Rh2BG310100 Rh2CG383400 Rh5BG449800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	377
Acc16I	TGCGCA	1 cut(s)	566
AccB7I	CCANNNNNTGG	1 cut(s)	383
AccII	CGCG	2 cut(s)	286, 300
AciI	CCGC	5 cut(s)	41, 52, 189, 286, 298
AclWI	GGATC	1 cut(s)	345
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	2 cut(s)	383, 422
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	2 cut(s)	325, 333
AluBI	AGCT	3 cut(s)	361, 432, 658
AluI	AGCT	3 cut(s)	361, 432, 658
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	4 cut(s)	71, 385, 565, 644
AlwI	GGATC	1 cut(s)	345
AlwNI	CAGNNNCTG	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	420
ApeKI	GCWGC	1 cut(s)	515
AspLEI	GCGC	2 cut(s)	40, 567
AspS9I	GGNCC	1 cut(s)	295
AvaI	CYCGRG	1 cut(s)	420
AvaII	GGWCC	1 cut(s)	295
BanII	GRGCYC	2 cut(s)	363, 481
BbsI	GAAGAC	2 cut(s)	107, 615
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	2 cut(s)	90, 271
BciT130I	CCWGG	2 cut(s)	327, 335
BcoDI	GTCTC	4 cut(s)	71, 385, 565, 644
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	540
BglII	AGATCT	1 cut(s)	29
BisI	GCNGC	3 cut(s)	41, 53, 516
BlsI	GCNGC	3 cut(s)	42, 54, 517
BmcAI	AGTACT	1 cut(s)	251
Bme1390I	CCNGG	2 cut(s)	327, 335
Bme18I	GGWCC	1 cut(s)	295
BmeT110I	CYCGRG	1 cut(s)	420
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	2 cut(s)	327, 335
BpiI	GAAGAC	2 cut(s)	107, 615
BpuEI	CTTGAG	1 cut(s)	644
BsaI	GGTCTC	1 cut(s)	565
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 422
Bse1I	ACTGG	1 cut(s)	377
BseBI	CCWGG	2 cut(s)	327, 335
BseLI	CCNNNNNNNGG	2 cut(s)	383, 422
BseMII	CTCAG	2 cut(s)	170, 348
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	4 cut(s)	138, 207, 210, 213
BseXI	GCAGC	1 cut(s)	527
Bsh1236I	CGCG	2 cut(s)	286, 300
BsiHKAI	GWGCWC	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	420
BslI	CCNNNNNNNGG	2 cut(s)	383, 422
BsmAI	GTCTC	4 cut(s)	71, 385, 565, 644
BsmI	GAATGC	2 cut(s)	343, 393
Bso31I	GGTCTC	1 cut(s)	565
BsoBI	CYCGRG	1 cut(s)	420
Bsp1286I	GDGCHC	2 cut(s)	363, 481
Bsp143I	GATC	2 cut(s)	29, 337
BspACI	CCGC	5 cut(s)	41, 52, 189, 286, 298
BspCNI	CTCAG	2 cut(s)	169, 349
BspFNI	CGCG	2 cut(s)	286, 300
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	1 cut(s)	261
BspPI	GGATC	1 cut(s)	345
BspTNI	GGTCTC	1 cut(s)	565
BsrI	ACTGG	1 cut(s)	377
BssMI	GATC	2 cut(s)	29, 337
Bst2UI	CCWGG	2 cut(s)	327, 335
Bst4CI	ACNGT	1 cut(s)	643
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	3 cut(s)	156, 357, 654
BstEII	GGTNACC	1 cut(s)	483
BstFNI	CGCG	2 cut(s)	286, 300
BstHHI	GCGC	2 cut(s)	40, 567
BstKTI	GATC	2 cut(s)	32, 340
BstMAI	GTCTC	4 cut(s)	71, 385, 565, 644
BstMBI	GATC	2 cut(s)	29, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 476
BstNI	CCWGG	2 cut(s)	327, 335
BstNSI	RCATGY	1 cut(s)	376
BstPI	GGTNACC	1 cut(s)	483
BstSCI	CCNGG	2 cut(s)	325, 333
BstSFI	CTRYAG	1 cut(s)	540
BstUI	CGCG	2 cut(s)	286, 300
BstV1I	GCAGC	1 cut(s)	527
BstV2I	GAAGAC	2 cut(s)	107, 615
BstX2I	RGATCY	2 cut(s)	29, 337
BstYI	RGATCY	2 cut(s)	29, 337
Cac8I	GCNNGC	1 cut(s)	468
CaiI	CAGNNNCTG	1 cut(s)	383
CciI	TCATGA	1 cut(s)	646
CfoI	GCGC	2 cut(s)	40, 567
Cfr13I	GGNCC	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	4 cut(s)	256, 373, 392, 647
CviJI	RGCY	6 cut(s)	100, 262, 361, 432, 479, 658
CviKI_1	RGCY	6 cut(s)	100, 262, 361, 432, 479, 658
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	3 cut(s)	156, 357, 654
DpnI	GATC	2 cut(s)	31, 339
DpnII	GATC	2 cut(s)	29, 337
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
EciI	GGCGGA	1 cut(s)	204
Ecl136II	GAGCTC	1 cut(s)	361
Eco24I	GRGCYC	2 cut(s)	363, 481
Eco31I	GGTCTC	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	420
Eco91I	GGTNACC	1 cut(s)	483
EcoICRI	GAGCTC	1 cut(s)	361
EcoO65I	GGTNACC	1 cut(s)	483
EcoRII	CCWGG	2 cut(s)	325, 333
EcoT22I	ATGCAT	1 cut(s)	393
EcoT38I	GRGCYC	2 cut(s)	363, 481
FaeI	CATG	4 cut(s)	259, 376, 395, 650
FatI	CATG	4 cut(s)	255, 372, 391, 646
Fnu4HI	GCNGC	3 cut(s)	41, 53, 516
FriOI	GRGCYC	2 cut(s)	363, 481
Fsp4HI	GCNGC	3 cut(s)	41, 53, 516
FspBI	CTAG	1 cut(s)	213
FspI	TGCGCA	1 cut(s)	566
GlaI	GCGC	2 cut(s)	39, 566
GluI	GCNGC	3 cut(s)	41, 53, 516
HhaI	GCGC	2 cut(s)	40, 567
Hin1II	CATG	4 cut(s)	259, 376, 395, 650
Hin6I	GCGC	2 cut(s)	38, 565
HinP1I	GCGC	2 cut(s)	38, 565
HindIII	AAGCTT	1 cut(s)	430
HinfI	GANTC	4 cut(s)	281, 305, 330, 440
Hpy188I	TCNGA	3 cut(s)	64, 225, 445
Hpy188III	TCNNGA	6 cut(s)	158, 213, 368, 384, 502, 647
HpyAV	CCTTC	3 cut(s)	162, 286, 426
HpyCH4III	ACNGT	1 cut(s)	643
HpyCH4V	TGCA	3 cut(s)	343, 391, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 476
HpyF3I	CTNAG	3 cut(s)	156, 357, 654
Hsp92II	CATG	4 cut(s)	259, 376, 395, 650
HspAI	GCGC	2 cut(s)	38, 565
Kzo9I	GATC	2 cut(s)	29, 337
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	1 cut(s)	527
MaeI	CTAG	1 cut(s)	213
MaeIII	GTNAC	4 cut(s)	167, 483, 637, 664
MalI	GATC	2 cut(s)	31, 339
MboI	GATC	2 cut(s)	29, 337
MboII	GAAGA	3 cut(s)	107, 116, 620
MflI	RGATCY	2 cut(s)	29, 337
MhlI	GDGCHC	2 cut(s)	363, 481
MluCI	AATT	1 cut(s)	590
MlyI	GAGTC	2 cut(s)	299, 324
MmeI	TCCRAC	2 cut(s)	156, 654
Mph1103I	ATGCAT	1 cut(s)	393
MseI	TTAA	3 cut(s)	456, 552, 579
MspA1I	CMGCKG	1 cut(s)	52
MspR9I	CCNGG	2 cut(s)	327, 335
Mva1269I	GAATGC	2 cut(s)	343, 393
MvaI	CCWGG	2 cut(s)	327, 335
MvnI	CGCG	2 cut(s)	286, 300
MwoI	GCNNNNNNNGC	2 cut(s)	49, 476
NdeII	GATC	2 cut(s)	29, 337
NlaIII	CATG	4 cut(s)	259, 376, 395, 650
NlaIV	GGNNCC	1 cut(s)	261
NsbI	TGCGCA	1 cut(s)	566
NsiI	ATGCAT	1 cut(s)	393
NspI	RCATGY	1 cut(s)	376
PagI	TCATGA	1 cut(s)	646
PctI	GAATGC	2 cut(s)	343, 393
PfeI	GAWTC	2 cut(s)	281, 440
PflFI	GACNNNGTC	1 cut(s)	82
PflMI	CCANNNNNTGG	1 cut(s)	383
PfoI	TCCNGGA	2 cut(s)	325, 333
PkrI	GCNGC	3 cut(s)	42, 54, 517
PleI	GAGTC	2 cut(s)	299, 324
PpsI	GAGTC	2 cut(s)	299, 324
Psp124BI	GAGCTC	1 cut(s)	363
Psp6I	CCWGG	2 cut(s)	325, 333
PspEI	GGTNACC	1 cut(s)	483
PspGI	CCWGG	2 cut(s)	325, 333
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	383
PsuI	RGATCY	2 cut(s)	29, 337
PsyI	GACNNNGTC	1 cut(s)	82
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	3 cut(s)	456, 552, 579
SatI	GCNGC	3 cut(s)	41, 53, 516
Sau3AI	GATC	2 cut(s)	29, 337
Sau96I	GGNCC	1 cut(s)	295
ScaI	AGTACT	1 cut(s)	251
SchI	GAGTC	2 cut(s)	299, 324
ScrFI	CCNGG	2 cut(s)	327, 335
SduI	GDGCHC	2 cut(s)	363, 481
SetI	ASST	8 cut(s)	184, 274, 363, 434, 451, 501, 660, 666
SfcI	CTRYAG	1 cut(s)	540
SinI	GGWCC	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
Sse9I	AATT	1 cut(s)	590
SsiI	CCGC	5 cut(s)	41, 52, 189, 286, 298
SspI	AATATT	1 cut(s)	410
SspMI	CTAG	1 cut(s)	213
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	325, 333
TaaI	ACNGT	1 cut(s)	643
TaqI	TCGA	1 cut(s)	266
TasI	AATT	1 cut(s)	590
TatI	WGTACW	1 cut(s)	249
TauI	GCSGC	2 cut(s)	43, 55
TfiI	GAWTC	2 cut(s)	281, 440
Tru1I	TTAA	3 cut(s)	456, 552, 579
Tru9I	TTAA	3 cut(s)	456, 552, 579
TseI	GCWGC	1 cut(s)	515
TspDTI	ATGAA	2 cut(s)	17, 635
Tth111I	GACNNNGTC	1 cut(s)	82
Van91I	CCANNNNNTGG	1 cut(s)	383
VpaK11BI	GGWCC	1 cut(s)	295
XbaI	TCTAGA	1 cut(s)	212
XceI	RCATGY	1 cut(s)	376
XspI	CTAG	1 cut(s)	213
ZrmI	AGTACT	1 cut(s)	251
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.