pycom10g01260

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0005001
Physical Location & Seq
Forward (+)
1325693 .. 1327173
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1263 bp
ATGCATTCATCTCGTCCATTTCTCTTCTGGGTCCTTTTCTTTTTCGTCTCCAACCTCAGTTTCCCTTCGCTTTCTGTCCCGTTCTTGCCTGCGACGAACAATAACCTCACCCTCTTCGGCGACGCTTCCATCACCAACACCGCGATTAGTCTCACTCAAGAACTCACCACCTGCCCCTCCTCCTCCCCTTCTGCTTCTTCTGGGGTTGGAAGAGCATTTTACGCCTACCCAATTCGGTTTCTTGACTCGAAAACCAACGCCACTGCCTCTTTCTTGTGCCGATTCTCTTTCTCAATCACCCCAAGTTCCCGATTGTGTTCTTCTGGAGATGGCATTGCGTTTGTGATCACCCCCGATGTTGATTCTCTGGGATCATCCAGAGGGGGGTATATGGGACTTCCGGAGCCATCCTCAGCGTCGAAAGAATCGTTCTTCGCTGTGGAATTCGATACTAGGTTTGATCCTATGGTCGGTGACATCAATGGGAACCACATTGGTATTGATTTGAACACAGTTGTGTCTGTTGCCTGTGTTGATGTTGTTTCAAGAGGTATTGATTTGACAAGTGGGAGGGAGATTACTGCTTGGATTGAGTACAGAGATGCTGTCAAGATGATTCGGGTTTGGGTCGGATACTCGTCAACTAGGCCTCCAACGCCTCTTCTTGTTGCTCAGATTGACCTCTCCAACCAGTTCAAGGAGTTCATGCGTGTCGGTTTCTCAGCCTCGAATGGGCATGGCTCTTCAGTTCACGTTGTTTACAGGTGGAGATTCAAGACTTTCGGGTCTCTTCCACCTGGGAATCCTACAGATGCCTTTGAAGAAGGGGACTGCTTCATGTGCTCTTCACCAGAAGATTCAAGTACCAAAAGCATCCCGGAAAATCGTTCCCATGAAAGAAAAACAAAGATAGTGGAGATGGTTCTTGGGTTGGGAGGTTTAGCAGCGGTCACTGCCAGAAGGAGCAGAGAGGGCAAAACTTGTAGAGTTGAGGCGAATAAAGTTCCGACGAGTTTGTCTCTTGCAGAGATAAGATCAGCGACAATGGGGTTTAACCGACACAGGGTTGTCGGGGAAGGGGCATCAGCTAAGGTTTATAAAGGGTCTCTGTCCTCTGGTGGAGAAGTGGCTGTGAAAAGGTTTGAGAGGGGTGATGGGATCGGTAGTCTGCGTAATCCTTTTACCACGGAGTTTGCAACTATGGTGGGTTGTTTGCGGCACAAGAATCTGATCCAGCTTCATGGGTGGTGCTGTGAGGTGTGA

Protein Analysis

421

Amino Acids

45.6

Weight (kDa)

8.5

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 30 - 261 1.8e-57 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1098
AarI CACCTGC 1 cut(s) 179
AasI GACNNNNNNGTC 2 cut(s) 784, 1015
Acc36I ACCTGC 1 cut(s) 179
AccII CGCG 1 cut(s) 143
AccIII TCCGGA 1 cut(s) 400
AciI CCGC 3 cut(s) 141, 947, 1216
AclWI GGATC 4 cut(s) 379, 455, 1166, 1225
AcsI RAATTY 1 cut(s) 443
AcuI CTGAAG 1 cut(s) 729
AfaI GTAC 2 cut(s) 596, 865
AfiI CCNNNNNNNGG 5 cut(s) 384, 470, 697, 732, 1063
AgsI TTSAA 6 cut(s) 508, 546, 697, 775, 821, 861
AjnI CCWGG 1 cut(s) 796
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AleI CACNNNNGTG 1 cut(s) 515
AluBI AGCT 2 cut(s) 1088, 1237
AluI AGCT 2 cut(s) 1088, 1237
Alw21I GWGCWC 1 cut(s) 845
Alw26I GTCTC 5 cut(s) 52, 155, 792, 1023, 1110
AlwI GGATC 4 cut(s) 379, 455, 1166, 1225
Aor13HI TCCGGA 1 cut(s) 400
AoxI GGCC 1 cut(s) 647
ApeKI GCWGC 1 cut(s) 944
ApoI RAATTY 1 cut(s) 443
AspS9I GGNCC 1 cut(s) 31
AsuC2I CCSGG 1 cut(s) 878
AsuHPI GGTGA 8 cut(s) 100, 124, 157, 289, 340, 485, 840, 1163
AvaII GGWCC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 845
BbvCI CCTCAGC 1 cut(s) 412
BbvI GCAGC 1 cut(s) 956
BccI CCATC 5 cut(s) 137, 323, 415, 913, 1148
BcgI CGANNNNNNTGC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 798
BciVI GTATCC 1 cut(s) 626
BclI TGATCA 1 cut(s) 345
BcnI CCSGG 1 cut(s) 878
BcoDI GTCTC 5 cut(s) 52, 155, 792, 1023, 1110
BfaI CTAG 2 cut(s) 453, 645
BfmI CTRYAG 1 cut(s) 807
BfuAI ACCTGC 1 cut(s) 179
BfuI GTATCC 1 cut(s) 626
BisI GCNGC 2 cut(s) 945, 1217
BlsI GCNGC 2 cut(s) 946, 1218
Bme1390I CCNGG 2 cut(s) 798, 878
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 3 cut(s) 32, 405, 488
BmrFI CCNGG 2 cut(s) 798, 878
BmsI GCATC 4 cut(s) 592, 802, 882, 1091
BplI GAGNNNNNCTC 4 cut(s) 395, 427, 1003, 1035
BpmI CTGGAG 1 cut(s) 345
Bpu10I CCTNAGC 2 cut(s) 412, 1089
BpuEI CTTGAG 1 cut(s) 141
BpuMI CCSGG 1 cut(s) 878
BsaI GGTCTC 2 cut(s) 792, 1110
BsaJI CCNNGG 2 cut(s) 797, 1185
BsaWI WCCGGW 1 cut(s) 400
BsaXI ACNNNNNCTCC 2 cut(s) 634, 664
Bsc4I CCNNNNNNNGG 5 cut(s) 384, 470, 697, 732, 1063
Bse1I ACTGG 1 cut(s) 691
Bse3DI GCAATG 1 cut(s) 333
BseAI TCCGGA 1 cut(s) 400
BseBI CCWGG 1 cut(s) 798
BseDI CCNNGG 2 cut(s) 797, 1185
BseGI GGATG 3 cut(s) 374, 407, 873
BseLI CCNNNNNNNGG 5 cut(s) 384, 470, 697, 732, 1063
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 4 cut(s) 70, 426, 686, 735
BseNI ACTGG 1 cut(s) 691
BseRI GAGGAG 2 cut(s) 169, 172
BseXI GCAGC 1 cut(s) 956
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 1 cut(s) 649
BsiHKAI GWGCWC 1 cut(s) 845
BsiSI CCGG 2 cut(s) 401, 878
BslFI GGGAC 3 cut(s) 62, 408, 842
BslI CCNNNNNNNGG 5 cut(s) 384, 470, 697, 732, 1063
BsmAI GTCTC 5 cut(s) 52, 155, 792, 1023, 1110
BsmBI CGTCTC 1 cut(s) 52
BsmFI GGGAC 3 cut(s) 62, 408, 842
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 1 cut(s) 649
Bso31I GGTCTC 2 cut(s) 792, 1110
Bsp1286I GDGCHC 1 cut(s) 845
Bsp13I TCCGGA 1 cut(s) 400
Bsp143I GATC 6 cut(s) 345, 371, 460, 1034, 1158, 1230
BspACI CCGC 3 cut(s) 141, 947, 1216
BspANI GGCC 1 cut(s) 649
BspCNI CTCAG 4 cut(s) 69, 425, 685, 734
BspEI TCCGGA 1 cut(s) 400
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 3 cut(s) 32, 405, 488
BspMI ACCTGC 1 cut(s) 179
BspPI GGATC 4 cut(s) 379, 455, 1166, 1225
BspQI GCTCTTC 3 cut(s) 205, 748, 850
BspTNI GGTCTC 2 cut(s) 792, 1110
BsrDI GCAATG 1 cut(s) 333
BsrI ACTGG 1 cut(s) 691
BssECI CCNNGG 2 cut(s) 797, 1185
BssMI GATC 6 cut(s) 345, 371, 460, 1034, 1158, 1230
Bst2UI CCWGG 1 cut(s) 798
Bst4CI ACNGT 1 cut(s) 514
Bst6I CTCTTC 7 cut(s) 29, 119, 205, 666, 748, 795, 850
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 5 cut(s) 56, 412, 672, 721, 1089
BstDSI CCRYGG 1 cut(s) 1185
BstF5I GGATG 3 cut(s) 374, 407, 873
BstFNI CGCG 1 cut(s) 143
BstKTI GATC 6 cut(s) 348, 374, 463, 1037, 1161, 1233
BstMAI GTCTC 5 cut(s) 52, 155, 792, 1023, 1110
BstMBI GATC 6 cut(s) 345, 371, 460, 1034, 1158, 1230
BstMWI GCNNNNNNNGC 5 cut(s) 221, 655, 840, 953, 972
BstNI CCWGG 1 cut(s) 798
BstSCI CCNGG 2 cut(s) 796, 876
BstSFI CTRYAG 1 cut(s) 807
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 956
BstXI CCANNNNNNTGG 1 cut(s) 1241
BsuI GTATCC 1 cut(s) 626
BsuRI GGCC 1 cut(s) 649
BtgI CCRYGG 1 cut(s) 1185
BtsCI GGATG 3 cut(s) 374, 407, 873
BtsI GCAGTG 2 cut(s) 261, 951
BtsIMutI CAGTG 2 cut(s) 261, 951
BveI ACCTGC 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 31
CseI GACGC 2 cut(s) 131, 405
Csp6I GTAC 2 cut(s) 595, 864
CspCI CAANNNNNGTGG 6 cut(s) 894, 929, 1174, 1185, 1209, 1220
CviAII CATG 5 cut(s) 706, 737, 838, 893, 1241
CviJI RGCY 7 cut(s) 406, 649, 725, 741, 1088, 1130, 1237
CviKI_1 RGCY 7 cut(s) 406, 649, 725, 741, 1088, 1130, 1237
CviQI GTAC 2 cut(s) 595, 864
DdeI CTNAG 5 cut(s) 56, 412, 672, 721, 1089
DpnI GATC 6 cut(s) 347, 373, 462, 1036, 1160, 1232
DpnII GATC 6 cut(s) 345, 371, 460, 1034, 1158, 1230
DrdI GACNNNNNNGTC 2 cut(s) 784, 1015
DseDI GACNNNNNNGTC 2 cut(s) 784, 1015
Eam1104I CTCTTC 7 cut(s) 29, 119, 205, 666, 748, 795, 850
EarI CTCTTC 7 cut(s) 29, 119, 205, 666, 748, 795, 850
Eco147I AGGCCT 1 cut(s) 649
Eco31I GGTCTC 2 cut(s) 792, 1110
Eco47I GGWCC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 729
EcoO109I RGGNCCY 1 cut(s) 31
EcoRI GAATTC 1 cut(s) 443
EcoRII CCWGG 1 cut(s) 796
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 5 cut(s) 709, 740, 841, 896, 1244
FaqI GGGAC 3 cut(s) 62, 408, 842
FatI CATG 5 cut(s) 705, 736, 837, 892, 1240
FbaI TGATCA 1 cut(s) 345
Fnu4HI GCNGC 2 cut(s) 945, 1217
FokI GGATG 3 cut(s) 361, 394, 860
Fsp4HI GCNGC 2 cut(s) 945, 1217
FspBI CTAG 2 cut(s) 453, 645
GluI GCNGC 2 cut(s) 945, 1217
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 1 cut(s) 649
HapII CCGG 2 cut(s) 401, 878
HgaI GACGC 2 cut(s) 131, 405
Hin1II CATG 5 cut(s) 709, 740, 841, 896, 1244
HincII GTYRAC 1 cut(s) 642
HindII GTYRAC 1 cut(s) 642
HinfI GANTC 9 cut(s) 245, 282, 362, 425, 616, 771, 802, 857, 1225
HpaII CCGG 2 cut(s) 401, 878
HphI GGTGA 8 cut(s) 100, 124, 157, 289, 340, 485, 840, 1163
Hpy166II GTNNAC 3 cut(s) 642, 751, 760
Hpy188I TCNGA 4 cut(s) 632, 675, 1008, 1230
Hpy188III TCNNGA 9 cut(s) 158, 242, 309, 324, 378, 401, 546, 610, 775
Hpy8I GTNNAC 3 cut(s) 642, 751, 760
Hpy99I CGWCG 4 cut(s) 97, 125, 421, 1012
HpyAV CCTTC 5 cut(s) 75, 198, 818, 954, 1070
HpyCH4III ACNGT 1 cut(s) 514
HpyCH4IV ACGT 1 cut(s) 753
HpyCH4V TGCA 3 cut(s) 4, 1025, 1196
HpyF10VI GCNNNNNNNGC 5 cut(s) 221, 655, 840, 953, 972
HpyF3I CTNAG 5 cut(s) 56, 412, 672, 721, 1089
HpySE526I ACGT 1 cut(s) 753
Hsp92II CATG 5 cut(s) 709, 740, 841, 896, 1244
Kpn2I TCCGGA 1 cut(s) 400
Ksp22I TGATCA 1 cut(s) 345
Kzo9I GATC 6 cut(s) 345, 371, 460, 1034, 1158, 1230
LguI GCTCTTC 3 cut(s) 205, 748, 850
LmnI GCTCC 2 cut(s) 403, 963
Lsp1109I GCAGC 1 cut(s) 956
LweI GCATC 4 cut(s) 592, 802, 882, 1091
MaeI CTAG 2 cut(s) 453, 645
MaeII ACGT 1 cut(s) 753
MaeIII GTNAC 2 cut(s) 473, 949
MalI GATC 6 cut(s) 347, 373, 462, 1036, 1160, 1232
MboI GATC 6 cut(s) 345, 371, 460, 1034, 1158, 1230
MhlI GDGCHC 1 cut(s) 845
MluCI AATT 2 cut(s) 231, 443
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 6 cut(s) 75, 187, 610, 677, 711, 1031
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 400
MseI TTAA 1 cut(s) 1053
MslI CAYNNNNRTG 1 cut(s) 515
MspA1I CMGCKG 1 cut(s) 947
MspI CCGG 2 cut(s) 401, 878
MspR9I CCNGG 2 cut(s) 798, 878
Mva1269I GAATGC 1 cut(s) 4
MvaI CCWGG 1 cut(s) 798
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 5 cut(s) 221, 655, 840, 953, 972
NciI CCSGG 1 cut(s) 878
NdeII GATC 6 cut(s) 345, 371, 460, 1034, 1158, 1230
NlaIII CATG 5 cut(s) 709, 740, 841, 896, 1244
NlaIV GGNNCC 3 cut(s) 32, 405, 488
NmuCI GTSAC 2 cut(s) 473, 949
NsiI ATGCAT 1 cut(s) 6
OliI CACNNNNGTG 1 cut(s) 515
PaqCI CACCTGC 1 cut(s) 179
PceI AGGCCT 1 cut(s) 649
PciSI GCTCTTC 3 cut(s) 205, 748, 850
PcsI WCGNNNNNNNCGW 1 cut(s) 425
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 8 cut(s) 282, 362, 425, 616, 771, 802, 857, 1225
PfoI TCCNGGA 1 cut(s) 876
PkrI GCNGC 2 cut(s) 946, 1218
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
PpuMI RGGWCCY 1 cut(s) 31
PsiI TTATAA 1 cut(s) 1098
Psp5II RGGWCCY 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 796
PspGI CCWGG 1 cut(s) 796
PspN4I GGNNCC 3 cut(s) 32, 405, 488
PspPI GGNCC 1 cut(s) 31
PspPPI RGGWCCY 1 cut(s) 31
RsaI GTAC 2 cut(s) 596, 865
RsaNI GTAC 2 cut(s) 595, 864
RseI CAYNNNNRTG 1 cut(s) 515
SapI GCTCTTC 3 cut(s) 205, 748, 850
SaqAI TTAA 1 cut(s) 1053
SatI GCNGC 2 cut(s) 945, 1217
Sau3AI GATC 6 cut(s) 345, 371, 460, 1034, 1158, 1230
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 2 cut(s) 798, 878
SduI GDGCHC 1 cut(s) 845
SfaNI GCATC 4 cut(s) 592, 802, 882, 1091
SfcI CTRYAG 1 cut(s) 807
SinI GGWCC 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 515
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 2 cut(s) 231, 443
SseBI AGGCCT 1 cut(s) 649
SsiI CCGC 3 cut(s) 141, 947, 1216
SspMI CTAG 2 cut(s) 453, 645
StuI AGGCCT 1 cut(s) 649
StyD4I CCNGG 2 cut(s) 796, 876
TaaI ACNGT 1 cut(s) 514
TaiI ACGT 1 cut(s) 756
TaqI TCGA 4 cut(s) 248, 419, 447, 728
TasI AATT 2 cut(s) 231, 443
TatI WGTACW 1 cut(s) 594
TauI GCSGC 1 cut(s) 1219
TfiI GAWTC 8 cut(s) 282, 362, 425, 616, 771, 802, 857, 1225
Tru1I TTAA 1 cut(s) 1053
Tru9I TTAA 1 cut(s) 1053
TscAI CASTG 2 cut(s) 268, 958
TseFI GTSAC 2 cut(s) 473, 949
TseI GCWGC 1 cut(s) 944
Tsp45I GTSAC 2 cut(s) 473, 949
TspDTI ATGAA 4 cut(s) 694, 826, 909, 1229
TspGWI ACGGA 1 cut(s) 1202
TspRI CASTG 2 cut(s) 268, 958
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 1 cut(s) 443
XcmI CCANNNNNNNNNTGG 1 cut(s) 24
XspI CTAG 2 cut(s) 453, 645
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.