pycom10g05900

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0004608
Physical Location & Seq
Reverse (-)
6579313 .. 6580651
1339 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 894 bp
ATGCTCGGCGGAGATACCAACAGCTGTGGGTTTCCGCAAACCGAAAGACACGACTCTGTCCTTTCCCCGTTTGGCAACGGCGATAACACTCCCCACCAAACAAGAGATAAAAATATCCTCAGCGTAAAACAAACCAAAAACGACGACGTGTATATAATTTATTCGTATGGTGAAATTGTAAAACGCGTAGCCAAACGCGCCGTGCTTGGACCTTTGAACCCTGGTAACCAAACACCATGGAAATGGTTAACCCTGGTCGAGGGTGCCCGAGGCCCTATATTAACGAGGGTTCGGGGCCTGCTGACCCGCGTGCTCTCTTGTTCTGTTGTTCTTTCCCTAAAATTCGAGTCCTTTTTGTCACTAGGGTTACTGGTAGCCATGGCCTCTGCCGAGATCGAGTTCCGTTGCTTCGTCGGAGGGCTCGCCTGGGCCACCGACAATGAGGCGCTGGAGAGGGCCTTTTCCCAGTATGGTGAGATCATCGAATCGAAGATCATCAACGACCGTGAGACTGGGAGGTCCAGGGGCTTCGGCTTCGTCACCTTCGGCAGCGAGCAGGCGATGAGGGACGCGATCGAAGGCATGAACGGCCAGAACCTCGACGGCCGCAACATCACCGTCAACGAGGCTCAGTCTCGCGGATCCGGTGGTGGCGGTGGCGGAGGTGGCTACAGCCGCGGAGGCGGCGGAGGTGGATATGGAGGTGGTGGCGGCTACGGAGGTGGCGGTCGCCGTGAAGGCGGAGGTGGTGGGTACAGCCGTGGAGGCGGTGGCGGTGGATACGGAGGTGGTGGTGGTGGTCGTCGTGAGGGTGGTTATGGAGGCGGTGAGGGTGGCGGTGCTCCCTACTCCAGAGGAGGCGGTGGCTCTGAAGGCGGCAGCTGGAGGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

298

Amino Acids

30.49

Weight (kDa)

8.95

Isoelectric Point (pI)

53.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 137 - 206 1.2e-21 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 517
AccB1I GGYRCC 1 cut(s) 263
AccII CGCG 6 cut(s) 186, 198, 309, 572, 639, 678
AclWI GGATC 2 cut(s) 636, 649
AcoI YGGCCR 2 cut(s) 589, 604
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 1 cut(s) 891
AfaI GTAC 1 cut(s) 755
AfiI CCNNNNNNNGG 1 cut(s) 259
AflIII ACRYGT 2 cut(s) 147, 184
AgsI TTSAA 1 cut(s) 217
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 4 cut(s) 220, 252, 425, 521
AluBI AGCT 2 cut(s) 24, 882
AluI AGCT 2 cut(s) 24, 882
Alw21I GWGCWC 2 cut(s) 315, 844
Alw26I GTCTC 2 cut(s) 503, 639
AlwI GGATC 2 cut(s) 636, 649
Ama87I CYCGRG 1 cut(s) 267
AoxI GGCC 7 cut(s) 271, 295, 381, 429, 456, 589, 604
ApeKI GCWGC 2 cut(s) 549, 879
ApoI RAATTY 1 cut(s) 341
AspLEI GCGC 2 cut(s) 200, 448
AspS9I GGNCC 6 cut(s) 209, 272, 295, 429, 456, 519
AsuHPI GGTGA 5 cut(s) 182, 485, 532, 607, 839
AvaI CYCGRG 1 cut(s) 267
AvaII GGWCC 2 cut(s) 209, 519
BaeGI GKGCMC 1 cut(s) 268
BaeI ACNNNNGTAYC 4 cut(s) 745, 772, 778, 805
BamHI GGATCC 1 cut(s) 641
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 423
Bbv12I GWGCWC 2 cut(s) 315, 844
BbvCI CCTCAGC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 561
BceAI ACGGC 6 cut(s) 94, 185, 604, 619, 717, 744
BciT130I CCWGG 4 cut(s) 222, 254, 427, 523
BciVI GTATCC 1 cut(s) 773
BcoDI GTCTC 2 cut(s) 503, 639
BfaI CTAG 1 cut(s) 362
BfmI CTRYAG 1 cut(s) 670
BfoI RGCGCY 1 cut(s) 449
BfuI GTATCC 1 cut(s) 773
BglI GCCNNNNNGGC 3 cut(s) 681, 738, 765
BisI GCNGC 7 cut(s) 550, 607, 676, 685, 712, 877, 880
BlsI GCNGC 7 cut(s) 551, 608, 677, 686, 713, 878, 881
Bme1390I CCNGG 4 cut(s) 222, 254, 427, 523
Bme18I GGWCC 2 cut(s) 209, 519
BmeT110I CYCGRG 1 cut(s) 267
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 6 cut(s) 209, 272, 295, 429, 456, 519
BmiI GGNNCC 3 cut(s) 265, 296, 643
BmrFI CCNGG 4 cut(s) 222, 254, 427, 523
BmrI ACTGGG 2 cut(s) 460, 522
BmuI ACTGGG 2 cut(s) 460, 522
BpmI CTGGAG 2 cut(s) 470, 835
Bpu10I CCTNAGC 1 cut(s) 119
BsaJI CCNNGG 9 cut(s) 220, 236, 252, 268, 378, 426, 522, 676, 760
BsaWI WCCGGW 1 cut(s) 644
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse1I ACTGG 3 cut(s) 375, 466, 517
BseBI CCWGG 4 cut(s) 222, 254, 427, 523
BseDI CCNNGG 9 cut(s) 220, 236, 252, 268, 378, 426, 522, 676, 760
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 2 cut(s) 133, 644
BseNI ACTGG 3 cut(s) 375, 466, 517
BseRI GAGGAG 1 cut(s) 870
BseSI GKGCMC 1 cut(s) 268
BseX3I CGGCCG 1 cut(s) 604
BseXI GCAGC 1 cut(s) 561
Bsh1236I CGCG 6 cut(s) 186, 198, 309, 572, 639, 678
Bsh1285I CGRYCG 4 cut(s) 505, 576, 607, 730
BshFI GGCC 7 cut(s) 273, 297, 383, 431, 458, 591, 606
BshNI GGYRCC 1 cut(s) 263
BsiEI CGRYCG 4 cut(s) 505, 576, 607, 730
BsiHKAI GWGCWC 2 cut(s) 315, 844
BsiHKCI CYCGRG 1 cut(s) 267
BsiSI CCGG 1 cut(s) 645
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 2 cut(s) 503, 639
BsmFI GGGAC 1 cut(s) 581
BsnI GGCC 7 cut(s) 273, 297, 383, 431, 458, 591, 606
BsoBI CYCGRG 1 cut(s) 267
Bsp1286I GDGCHC 4 cut(s) 268, 315, 423, 844
Bsp143I GATC 5 cut(s) 393, 477, 492, 573, 641
Bsp19I CCATGG 2 cut(s) 236, 378
BspANI GGCC 7 cut(s) 273, 297, 383, 431, 458, 591, 606
BspCNI CTCAG 2 cut(s) 132, 643
BspFNI CGCG 6 cut(s) 186, 198, 309, 572, 639, 678
BspLI GGNNCC 3 cut(s) 265, 296, 643
BspPI GGATC 2 cut(s) 636, 649
BspT107I GGYRCC 1 cut(s) 263
BsrI ACTGG 3 cut(s) 375, 466, 517
BssECI CCNNGG 9 cut(s) 220, 236, 252, 268, 378, 426, 522, 676, 760
BssMI GATC 5 cut(s) 393, 477, 492, 573, 641
BssT1I CCWWGG 2 cut(s) 236, 378
Bst2UI CCWGG 4 cut(s) 222, 254, 427, 523
Bst4CI ACNGT 2 cut(s) 506, 619
BstC8I GCNNGC 5 cut(s) 299, 311, 423, 554, 558
BstDEI CTNAG 2 cut(s) 119, 630
BstDSI CCRYGG 4 cut(s) 236, 378, 676, 760
BstEII GGTNACC 1 cut(s) 224
BstENI CCTNNNNNAGG 1 cut(s) 257
BstFNI CGCG 6 cut(s) 186, 198, 309, 572, 639, 678
BstH2I RGCGCY 1 cut(s) 449
BstHHI GCGC 2 cut(s) 200, 448
BstKTI GATC 5 cut(s) 396, 480, 495, 576, 644
BstMAI GTCTC 2 cut(s) 503, 639
BstMBI GATC 5 cut(s) 393, 477, 492, 573, 641
BstMCI CGRYCG 4 cut(s) 505, 576, 607, 730
BstMWI GCNNNNNNNGC 9 cut(s) 197, 588, 666, 675, 681, 684, 738, 765, 873
BstNI CCWGG 4 cut(s) 222, 254, 427, 523
BstPI GGTNACC 1 cut(s) 224
BstSCI CCNGG 4 cut(s) 220, 252, 425, 521
BstSFI CTRYAG 1 cut(s) 670
BstSLI GKGCMC 1 cut(s) 268
BstUI CGCG 6 cut(s) 186, 198, 309, 572, 639, 678
BstV1I GCAGC 1 cut(s) 561
BstX2I RGATCY 1 cut(s) 641
BstXI CCANNNNNNTGG 1 cut(s) 243
BstYI RGATCY 1 cut(s) 641
BstZI CGGCCG 1 cut(s) 604
BsuI GTATCC 1 cut(s) 773
BsuRI GGCC 7 cut(s) 273, 297, 383, 431, 458, 591, 606
BtgI CCRYGG 4 cut(s) 236, 378, 676, 760
BtgZI GCGATG 1 cut(s) 575
BtrI CACGTC 1 cut(s) 148
Cac8I GCNNGC 5 cut(s) 299, 311, 423, 554, 558
CfoI GCGC 2 cut(s) 200, 448
Cfr13I GGNCC 6 cut(s) 209, 272, 295, 429, 456, 519
Cfr42I CCGCGG 1 cut(s) 679
CseI GACGC 1 cut(s) 578
Csp6I GTAC 1 cut(s) 754
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 3 cut(s) 237, 379, 583
CviQI GTAC 1 cut(s) 754
DdeI CTNAG 2 cut(s) 119, 630
DpnI GATC 5 cut(s) 395, 479, 494, 575, 643
DpnII GATC 5 cut(s) 393, 477, 492, 573, 641
DrdI GACNNNNNNGTC 1 cut(s) 517
DseDI GACNNNNNNGTC 1 cut(s) 517
EaeI YGGCCR 2 cut(s) 589, 604
EagI CGGCCG 1 cut(s) 604
EciI GGCGGA 4 cut(s) 24, 675, 702, 756
EclXI CGGCCG 1 cut(s) 604
Eco130I CCWWGG 2 cut(s) 236, 378
Eco24I GRGCYC 1 cut(s) 423
Eco47I GGWCC 2 cut(s) 209, 519
Eco52I CGGCCG 1 cut(s) 604
Eco57I CTGAAG 1 cut(s) 891
Eco88I CYCGRG 1 cut(s) 267
Eco91I GGTNACC 1 cut(s) 224
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoO109I RGGNCCY 3 cut(s) 272, 295, 456
EcoO65I GGTNACC 1 cut(s) 224
EcoRII CCWGG 4 cut(s) 220, 252, 425, 521
EcoT14I CCWWGG 2 cut(s) 236, 378
EcoT38I GRGCYC 1 cut(s) 423
ErhI CCWWGG 2 cut(s) 236, 378
FaeI CATG 3 cut(s) 240, 382, 586
FaqI GGGAC 1 cut(s) 581
FatI CATG 3 cut(s) 236, 378, 582
FauI CCCGC 1 cut(s) 314
Fnu4HI GCNGC 7 cut(s) 550, 607, 676, 685, 712, 877, 880
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 7 cut(s) 550, 607, 676, 685, 712, 877, 880
FspBI CTAG 1 cut(s) 362
GlaI GCGC 2 cut(s) 199, 447
GluI GCNGC 7 cut(s) 550, 607, 676, 685, 712, 877, 880
GsuI CTGGAG 2 cut(s) 470, 835
HaeII RGCGCY 1 cut(s) 449
HaeIII GGCC 7 cut(s) 273, 297, 383, 431, 458, 591, 606
HapII CCGG 1 cut(s) 645
HgaI GACGC 1 cut(s) 578
HhaI GCGC 2 cut(s) 200, 448
Hin1II CATG 3 cut(s) 240, 382, 586
Hin6I GCGC 2 cut(s) 198, 446
HinP1I GCGC 2 cut(s) 198, 446
HincII GTYRAC 2 cut(s) 249, 622
HindII GTYRAC 2 cut(s) 249, 622
HinfI GANTC 3 cut(s) 53, 347, 485
HpaI GTTAAC 1 cut(s) 249
HpaII CCGG 1 cut(s) 645
HphI GGTGA 5 cut(s) 182, 485, 532, 607, 839
Hpy166II GTNNAC 2 cut(s) 249, 622
Hpy188I TCNGA 2 cut(s) 416, 871
Hpy188III TCNNGA 2 cut(s) 806, 852
Hpy8I GTNNAC 2 cut(s) 249, 622
Hpy99I CGWCG 5 cut(s) 146, 149, 416, 605, 807
HpyAV CCTTC 4 cut(s) 553, 572, 731, 866
HpyCH4III ACNGT 2 cut(s) 506, 619
HpyCH4IV ACGT 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 9 cut(s) 197, 588, 666, 675, 681, 684, 738, 765, 873
HpyF3I CTNAG 2 cut(s) 119, 630
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 3 cut(s) 240, 382, 586
HspAI GCGC 2 cut(s) 198, 446
KspAI GTTAAC 1 cut(s) 249
KspI CCGCGG 1 cut(s) 679
Kzo9I GATC 5 cut(s) 393, 477, 492, 573, 641
LmnI GCTCC 1 cut(s) 847
Lsp1109I GCAGC 1 cut(s) 561
MaeI CTAG 1 cut(s) 362
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 4 cut(s) 224, 357, 366, 538
MalI GATC 5 cut(s) 395, 479, 494, 575, 643
MboI GATC 5 cut(s) 393, 477, 492, 573, 641
MboII GAAGA 1 cut(s) 502
MflI RGATCY 1 cut(s) 641
MhlI GDGCHC 4 cut(s) 268, 315, 423, 844
MluCI AATT 3 cut(s) 156, 174, 341
MluI ACGCGT 1 cut(s) 184
MlyI GAGTC 2 cut(s) 47, 356
MmeI TCCRAC 1 cut(s) 394
MseI TTAA 2 cut(s) 248, 281
MslI CAYNNNNRTG 1 cut(s) 241
MspA1I CMGCKG 3 cut(s) 24, 678, 882
MspI CCGG 1 cut(s) 645
MspR9I CCNGG 4 cut(s) 222, 254, 427, 523
MvaI CCWGG 4 cut(s) 222, 254, 427, 523
MvnI CGCG 6 cut(s) 186, 198, 309, 572, 639, 678
MwoI GCNNNNNNNGC 9 cut(s) 197, 588, 666, 675, 681, 684, 738, 765, 873
NcoI CCATGG 2 cut(s) 236, 378
NdeII GATC 5 cut(s) 393, 477, 492, 573, 641
NlaIII CATG 3 cut(s) 240, 382, 586
NlaIV GGNNCC 3 cut(s) 265, 296, 643
NmeAIII GCCGAG 1 cut(s) 415
NmuCI GTSAC 2 cut(s) 357, 538
PfeI GAWTC 1 cut(s) 485
PflFI GACNNNGTC 1 cut(s) 56
PkrI GCNGC 7 cut(s) 551, 608, 677, 686, 713, 878, 881
Ple19I CGATCG 1 cut(s) 576
PleI GAGTC 2 cut(s) 47, 355
PpsI GAGTC 2 cut(s) 47, 355
Psp6I CCWGG 4 cut(s) 220, 252, 425, 521
PspEI GGTNACC 1 cut(s) 224
PspGI CCWGG 4 cut(s) 220, 252, 425, 521
PspN4I GGNNCC 3 cut(s) 265, 296, 643
PspPI GGNCC 6 cut(s) 209, 272, 295, 429, 456, 519
PsuI RGATCY 1 cut(s) 641
PsyI GACNNNGTC 1 cut(s) 56
PvuI CGATCG 1 cut(s) 576
PvuII CAGCTG 2 cut(s) 24, 882
RsaI GTAC 1 cut(s) 755
RsaNI GTAC 1 cut(s) 754
RseI CAYNNNNRTG 1 cut(s) 241
SacII CCGCGG 1 cut(s) 679
SaqAI TTAA 2 cut(s) 248, 281
SatI GCNGC 7 cut(s) 550, 607, 676, 685, 712, 877, 880
Sau3AI GATC 5 cut(s) 393, 477, 492, 573, 641
Sau96I GGNCC 6 cut(s) 209, 272, 295, 429, 456, 519
SchI GAGTC 2 cut(s) 47, 356
ScrFI CCNGG 4 cut(s) 222, 254, 427, 523
SduI GDGCHC 4 cut(s) 268, 315, 423, 844
SfcI CTRYAG 1 cut(s) 670
Sfr303I CCGCGG 1 cut(s) 679
SgrBI CCGCGG 1 cut(s) 679
SinI GGWCC 2 cut(s) 209, 519
SmiMI CAYNNNNRTG 1 cut(s) 241
Sse9I AATT 3 cut(s) 156, 174, 341
SspMI CTAG 1 cut(s) 362
StyD4I CCNGG 4 cut(s) 220, 252, 425, 521
StyI CCWWGG 2 cut(s) 236, 378
TaaI ACNGT 2 cut(s) 506, 619
TaiI ACGT 1 cut(s) 150
TaqI TCGA 7 cut(s) 258, 345, 396, 483, 488, 576, 600
TasI AATT 3 cut(s) 156, 174, 341
TauI GCSGC 5 cut(s) 609, 678, 687, 714, 879
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 2 cut(s) 248, 281
Tru9I TTAA 2 cut(s) 248, 281
TseFI GTSAC 2 cut(s) 357, 538
TseI GCWGC 2 cut(s) 549, 879
Tsp45I GTSAC 2 cut(s) 357, 538
TspDTI ATGAA 1 cut(s) 599
TspGWI ACGGA 3 cut(s) 392, 732, 798
Tth111I GACNNNGTC 1 cut(s) 56
VpaK11BI GGWCC 2 cut(s) 209, 519
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 1 cut(s) 341
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.