pycom10g12930

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0010302
Physical Location & Seq
Reverse (-)
16400948 .. 16403565
2618 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 867 bp
ATGCCAAATAAAAACATAAATGAGAAATACGCAGTTCTCTCACCGCAGTGGATCATTCGTCTGCCATCTGCGCCCGCGCCCGCCACCTCCCAAAACCAGAAGAAGCAAAAAGTTCGTCCCTTTTTGCTTCCTCTCTATTGCAGAAGCCAAGCAAACTGTTGGGTCGCGATCTCTCTGTCAAAACAATCTTATCACAATGCTTATTTGGCAGTGGATGATGAAGAACTTTCTATGAGCAAGGATGAGGACGTGTCAGAGAGTTCCAATGGGAAAGATGCAGTCACATCTGAGGGGAACTTGGATGCGGAACCATTTGTGGGTATGGAGTTTGAAACTGAAGAGGCTGCCAAGGTGTTCTATGATGCGTATGCAACACAGGTGGGTTTCATTATGCGAGTTGATGCCTTCCGGAGATCAATGCGCGATGGTAAGGTAGTTTGGCGTAGGCTTGTGTGTAATAAAGAGGGATTTCGCAAGACGCGAGCCAAAGGAACTGAAAACAGGAAGCCTCGAGCAATCACCAGAGAAGGGTGCAAAGCAATGATTGTGGTAAAGAAAGACAAGTCAGGGAAATGGGTCGTAACACGATTTATAAAGGAGCATAACCATCCACTAGTAGGTACACCTGCAAATGGTCGCCGCAGTATGCTTCTGTCTCAAACACCGGATGAAAAAGACCTGAAAATTCGGGAGTTGACTGCTGAGCTACAACGTGAGCGAAAAAGGTCTGCCACCTATCAAGAGCAGCTTGATACGGTTTTGAGGGAGATGGAACAGCATTCCAATCACCTGTCGAAAAACATCGACGTTATAGTCCAAAGCGTGAAAGAAATCGAATCAAAGAGGGTAGCACTTTCAAATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

289

Amino Acids

32.87

Weight (kDa)

9.43

Isoelectric Point (pI)

56.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 119 - 206 1.6e-32 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 593
AarI CACCTGC 1 cut(s) 634
AasI GACNNNNNNGTC 1 cut(s) 812
Acc36I ACCTGC 1 cut(s) 634
AccII CGCG 4 cut(s) 77, 167, 423, 481
AccIII TCCGGA 1 cut(s) 408
AciI CCGC 5 cut(s) 44, 75, 81, 305, 640
AclWI GGATC 1 cut(s) 59
AcsI RAATTY 1 cut(s) 684
AcuI CTGAAG 1 cut(s) 357
AfaI GTAC 1 cut(s) 622
AfiI CCNNNNNNNGG 4 cut(s) 317, 528, 617, 632
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 2 cut(s) 332, 858
AhlI ACTAGT 1 cut(s) 613
AjiI CACGTC 1 cut(s) 250
AleI CACNNNNGTG 1 cut(s) 46
AluBI AGCT 2 cut(s) 706, 748
AluI AGCT 2 cut(s) 706, 748
Alw26I GTCTC 1 cut(s) 660
AlwI GGATC 1 cut(s) 59
Ama87I CYCGRG 1 cut(s) 510
Aor13HI TCCGGA 1 cut(s) 408
ApeKI GCWGC 2 cut(s) 344, 745
ApoI RAATTY 1 cut(s) 684
ArsI GACNNNNNNTTYG 2 cut(s) 100, 132
AspLEI GCGC 3 cut(s) 73, 79, 423
AsuHPI GGTGA 3 cut(s) 33, 511, 779
AvaI CYCGRG 1 cut(s) 510
BbvI GCAGC 2 cut(s) 331, 757
BccI CCATC 4 cut(s) 73, 419, 615, 763
BcgI CGANNNNNNTGC 2 cut(s) 95, 129
BcoDI GTCTC 1 cut(s) 660
BcuI ACTAGT 1 cut(s) 613
BfaI CTAG 1 cut(s) 614
BfuAI ACCTGC 1 cut(s) 634
BisI GCNGC 3 cut(s) 345, 640, 746
BlpI GCTNAGC 1 cut(s) 702
BlsI GCNGC 3 cut(s) 346, 641, 747
BmeT110I CYCGRG 1 cut(s) 510
BmgBI CACGTC 1 cut(s) 250
BmiI GGNNCC 1 cut(s) 309
BmsI GCATC 4 cut(s) 265, 292, 352, 391
Bpu1102I GCTNAGC 1 cut(s) 702
BsaJI CCNNGG 1 cut(s) 348
BsaWI WCCGGW 2 cut(s) 408, 664
Bsc4I CCNNNNNNNGG 4 cut(s) 317, 528, 617, 632
Bse3DI GCAATG 1 cut(s) 546
BseAI TCCGGA 1 cut(s) 408
BseDI CCNNGG 1 cut(s) 348
BseGI GGATG 5 cut(s) 220, 247, 307, 607, 673
BseLI CCNNNNNNNGG 4 cut(s) 317, 528, 617, 632
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 2 cut(s) 279, 693
BseXI GCAGC 2 cut(s) 331, 757
Bsh1236I CGCG 4 cut(s) 77, 167, 423, 481
BsiHKCI CYCGRG 1 cut(s) 510
BsiSI CCGG 2 cut(s) 409, 665
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 4 cut(s) 317, 528, 617, 632
BsmAI GTCTC 1 cut(s) 660
BsmFI GGGAC 1 cut(s) 102
BsmI GAATGC 1 cut(s) 778
BsoBI CYCGRG 1 cut(s) 510
Bsp13I TCCGGA 1 cut(s) 408
Bsp143I GATC 3 cut(s) 51, 168, 413
Bsp1720I GCTNAGC 1 cut(s) 702
Bsp68I TCGCGA 1 cut(s) 167
BspACI CCGC 5 cut(s) 44, 75, 81, 305, 640
BspCNI CTCAG 2 cut(s) 280, 694
BspEI TCCGGA 1 cut(s) 408
BspFNI CGCG 4 cut(s) 77, 167, 423, 481
BspLI GGNNCC 1 cut(s) 309
BspMI ACCTGC 1 cut(s) 634
BspPI GGATC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 546
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 3 cut(s) 51, 168, 413
BssT1I CCWWGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 158, 757
Bst6I CTCTTC 1 cut(s) 333
BstC8I GCNNGC 3 cut(s) 75, 81, 483
BstDEI CTNAG 2 cut(s) 288, 702
BstF5I GGATG 5 cut(s) 220, 247, 307, 607, 673
BstFNI CGCG 4 cut(s) 77, 167, 423, 481
BstHHI GCGC 3 cut(s) 73, 79, 423
BstKTI GATC 3 cut(s) 54, 171, 416
BstMAI GTCTC 1 cut(s) 660
BstMBI GATC 3 cut(s) 51, 168, 413
BstMWI GCNNNNNNNGC 2 cut(s) 70, 206
BstUI CGCG 4 cut(s) 77, 167, 423, 481
BstV1I GCAGC 2 cut(s) 331, 757
BtgZI GCGATG 1 cut(s) 438
BtrI CACGTC 1 cut(s) 250
BtsCI GGATG 5 cut(s) 220, 247, 307, 607, 673
BtsI GCAGTG 2 cut(s) 53, 216
BtsIMutI CAGTG 2 cut(s) 53, 216
BtuMI TCGCGA 1 cut(s) 167
BveI ACCTGC 1 cut(s) 634
Cac8I GCNNGC 3 cut(s) 75, 81, 483
CfoI GCGC 3 cut(s) 73, 79, 423
CseI GACGC 1 cut(s) 487
Csp6I GTAC 1 cut(s) 621
CspCI CAANNNNNGTGG 4 cut(s) 360, 395, 528, 563
CviJI RGCY 7 cut(s) 147, 344, 448, 485, 508, 706, 748
CviKI_1 RGCY 7 cut(s) 147, 344, 448, 485, 508, 706, 748
CviQI GTAC 1 cut(s) 621
DdeI CTNAG 2 cut(s) 288, 702
DpnI GATC 3 cut(s) 53, 170, 415
DpnII GATC 3 cut(s) 51, 168, 413
DrdI GACNNNNNNGTC 1 cut(s) 812
DseDI GACNNNNNNGTC 1 cut(s) 812
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 348
Eco57I CTGAAG 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
FalI AAGNNNNNCTT 2 cut(s) 732, 764
FaqI GGGAC 1 cut(s) 102
FauI CCCGC 2 cut(s) 82, 88
Fnu4HI GCNGC 3 cut(s) 345, 640, 746
FokI GGATG 5 cut(s) 227, 254, 314, 594, 680
Fsp4HI GCNGC 3 cut(s) 345, 640, 746
FspBI CTAG 1 cut(s) 614
GlaI GCGC 3 cut(s) 72, 78, 422
GluI GCNGC 3 cut(s) 345, 640, 746
HapII CCGG 2 cut(s) 409, 665
HgaI GACGC 1 cut(s) 487
HhaI GCGC 3 cut(s) 73, 79, 423
Hin6I GCGC 3 cut(s) 71, 77, 421
HinP1I GCGC 3 cut(s) 71, 77, 421
HincII GTYRAC 1 cut(s) 696
HindII GTYRAC 1 cut(s) 696
HinfI GANTC 1 cut(s) 836
HpaII CCGG 2 cut(s) 409, 665
HphI GGTGA 3 cut(s) 33, 511, 779
Hpy166II GTNNAC 2 cut(s) 623, 696
Hpy188I TCNGA 2 cut(s) 256, 289
Hpy188III TCNNGA 4 cut(s) 166, 409, 689, 740
Hpy8I GTNNAC 2 cut(s) 623, 696
Hpy99I CGWCG 1 cut(s) 809
HpyAV CCTTC 2 cut(s) 415, 521
HpyCH4III ACNGT 2 cut(s) 158, 757
HpyCH4IV ACGT 3 cut(s) 249, 712, 807
HpyCH4V TGCA 5 cut(s) 141, 278, 371, 534, 629
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 206
HpyF3I CTNAG 2 cut(s) 288, 702
HpySE526I ACGT 3 cut(s) 249, 712, 807
HspAI GCGC 3 cut(s) 71, 77, 421
Kpn2I TCCGGA 1 cut(s) 408
Kzo9I GATC 3 cut(s) 51, 168, 413
LmnI GCTCC 1 cut(s) 598
Lsp1109I GCAGC 2 cut(s) 331, 757
LweI GCATC 4 cut(s) 265, 292, 352, 391
MaeI CTAG 1 cut(s) 614
MaeII ACGT 3 cut(s) 249, 712, 807
MaeIII GTNAC 2 cut(s) 280, 580
MalI GATC 3 cut(s) 53, 170, 415
MboI GATC 3 cut(s) 51, 168, 413
MboII GAAGA 3 cut(s) 112, 233, 350
MluCI AATT 1 cut(s) 684
MnlI CCTC 9 cut(s) 97, 141, 238, 283, 334, 457, 519, 756, 837
MroI TCCGGA 1 cut(s) 408
MseI TTAA 1 cut(s) 865
MslI CAYNNNNRTG 1 cut(s) 46
MspI CCGG 2 cut(s) 409, 665
Mva1269I GAATGC 1 cut(s) 778
MvnI CGCG 4 cut(s) 77, 167, 423, 481
MwoI GCNNNNNNNGC 2 cut(s) 70, 206
NdeII GATC 3 cut(s) 51, 168, 413
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 280
NruI TCGCGA 1 cut(s) 167
OliI CACNNNNGTG 1 cut(s) 46
PaeR7I CTCGAG 1 cut(s) 510
PaqCI CACCTGC 1 cut(s) 634
PcsI WCGNNNNNNNCGW 1 cut(s) 478
PctI GAATGC 1 cut(s) 778
PfeI GAWTC 1 cut(s) 836
PkrI GCNGC 3 cut(s) 346, 641, 747
PsiI TTATAA 1 cut(s) 593
PspN4I GGNNCC 1 cut(s) 309
PspXI VCTCGAGB 1 cut(s) 510
RruI TCGCGA 1 cut(s) 167
RsaI GTAC 1 cut(s) 622
RsaNI GTAC 1 cut(s) 621
RseI CAYNNNNRTG 1 cut(s) 46
SaqAI TTAA 1 cut(s) 865
SatI GCNGC 3 cut(s) 345, 640, 746
Sau3AI GATC 3 cut(s) 51, 168, 413
SfaNI GCATC 4 cut(s) 265, 292, 352, 391
Sfr274I CTCGAG 1 cut(s) 510
SlaI CTCGAG 1 cut(s) 510
SmiMI CAYNNNNRTG 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 510
SmoI CTYRAG 1 cut(s) 510
SpeI ACTAGT 1 cut(s) 613
Sse9I AATT 1 cut(s) 684
SsiI CCGC 5 cut(s) 44, 75, 81, 305, 640
SspMI CTAG 1 cut(s) 614
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 2 cut(s) 158, 757
TaiI ACGT 3 cut(s) 252, 715, 810
TaqI TCGA 4 cut(s) 511, 794, 804, 834
TasI AATT 1 cut(s) 684
TauI GCSGC 1 cut(s) 642
TfiI GAWTC 1 cut(s) 836
Tru1I TTAA 1 cut(s) 865
Tru9I TTAA 1 cut(s) 865
TscAI CASTG 2 cut(s) 53, 216
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 2 cut(s) 344, 745
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 3 cut(s) 234, 376, 684
TspRI CASTG 2 cut(s) 53, 216
XapI RAATTY 1 cut(s) 684
XhoI CTCGAG 1 cut(s) 510
XspI CTAG 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.