Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003751

Physical Location & Seq

Genomic Coordinates Reverse (-)

16892536 .. 16894874

Gene Structure 2339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGAAGAAGGGCGAGGATGCCCTTTTTACCATTCCCCCTGAGTTGGCTTATGGCGAGTCTGGATCACCTCCAACGATCCCACCCAGCGCTACATTGCAATTTGATGTTGAATTGCTATCGTGGACCAGTATCAATGACATATGCAAGGATGGTGGTATAATCAAGAAGATCCTGAAAGAGGGAGAAAAGTGGGAGAACCCAAAAGACCTCGATGAAGTTATAGTTAATTTTGAGGCGCAGCTTGAAGATAAAACACTTGTTGCAAAATATCAAGCTGTGGAATTCACTGTCAAAGATGGTTACTTCTGTCCTGCAATATCAAAGGCTGTTAAAACAATGAAGAAGGGGGAGAAGGTACTATTAACGGTGAAACCACAATATGGATATGGGGACAAGGGAAAGCCAGCCTCTGGCTCTGAGGGTGCAGTTCCTCCAAACACAACTCTTCATATCACTTTAGAGTTGGTATCATGGAGAACTGTGTCTGAAGTGACAGATGATAAGAAGGTTATTAAGAAGATCTTGAAAGAAGGGGAGGGATATGAGCGTCCAAATGAAGGGGCTGTTGTTAAATTGAAATTGACTGGGAAGCTGCAAGATGGGAAGGAATTTTTGAAGAAAGGTCATGTTGAAGGAGAAGACCTGTTCGAGTTTAAGACAGATGAAGAGCAAGTGATTGACGGGCTTGATAGAGCTGTACGGACAATGAAGAAGGGTGAGGTAGCACTCCTGACTATTGCACCAGAGTATGCATTTGGCTCCTTGGAGTCCCAGCAGGAGTTGGCTGTGGTACCTCCTAATTCAACTGTCAACTATGAGGTTGAGCTTGTATCTTTTGAGAAGGTAGCTGCGGGTAAGAAGAAGGAAGAAGGGAATGCTTTGTTTAAGGCGGGTAAATATGCAAGAGCTTCCAAGAGATATGAGAAGGCTGTGAAGTACATCGACTACGATACCAGCTTTGGTGAAGAGGAGAAAAAACAGGCCAAGCTGTTGAAGGTTGCTTGCAATCTTAACGATGCAGCTTGCAAGCTGAAGCTGAAGGATTATAAACAGGCTGAAAAATTGTGCACCAAGGTGTTGGAACTTGAGGGTAGGAATGTGAAGGCTCTGTACCGAAGGGCTCAGGCATATATTCAGCTGGCAGATTTGGATTTGGCTGAGCTTGACATCAAGAAAGCTCTTGAAATAGACCCTAACAACAAGGATGTGAAGCTGGAGTACAAGACACTGAAGGAGAAGATGAAAGAATACAATAAAAAAGAGGCCAAGTTCTACGGCAACATGTTTGCCAAATTGACTAAGTCGGACTCTCCTGATAGCAATGTAAGCATCCTTCTGGTCAAAGAAGCAGCTAAAGATGCCGAACCCATGAGCGTAGACAGTAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_8

Protein Analysis

464

Amino Acids

51.64

Weight (kDa)

6.83

Isoelectric Point (pI)

26.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	1 - 39	3.5e-11	FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C	PF00254	65 - 156	3.3e-17	FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C	PF00254	181 - 277	3.2e-21	FKBP-type peptidyl-prolyl cis-trans isomerase
TPR_19	PF14559	344 - 403	3.2e-06	Tetratricopeptide repeat
TPR_1	PF00515	367 - 400	3.4e-07	Tetratricopeptide repeat
TPR_8	PF13181	368 - 400	4e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25230 AT3G25230
fragaria_vesca	FvH4_2g18150 FvH4_2g18150 FvH4_2g18150
malus_domestica	MD05G1166200.v1.1 MD10G1156300.v1.1
prunus_persica	Prupe.8G194100_v2.0.a1
pyrus_communis	pycom05g15490 pycom10g13450
rosa_chinensis	RchiOBHm_Chr6g0283541 RchiOBHm_Chr7g0204881
rosa_laevigata	RLG00000003424 RLG00000012818
rosa_multiflora	Rmu_sc0005719.1_g000005 Rmu_sc0007194.1_g000004 Rmu_sc0031409.1_g000001 Rmu_sc0031410.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252700 Rroxscaffold_7G00185450
rosa_rugosa	Rorug06G0155300 Rorug06G0155400 Rorug06G0155500 Rorug06G0155600 Rorug07G0086300
rosa_samantha	Rh6AG267500 Rh6BG174200 Rh6BG270000 Rh6DG263400 Rh7AG217000 Rh7CG230200 Rh7DG224600
rosa_wichuraiana	Rw6G023160 Rw7G018810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1047
Acc65I	GGTACC	1 cut(s)	790
AccB1I	GGYRCC	1 cut(s)	790
AccB7I	CCANNNNNTGG	2 cut(s)	380, 410
AccI	GTMKAC	1 cut(s)	1377
AciI	CCGC	2 cut(s)	851, 890
AclWI	GGATC	3 cut(s)	70, 70, 163
AcsI	RAATTY	2 cut(s)	281, 608
AcuI	CTGAAG	4 cut(s)	507, 1052, 1058, 1250
AfaI	GTAC	6 cut(s)	357, 699, 792, 938, 1112, 1220
AfeI	AGCGCT	1 cut(s)	88
AfiI	CCNNNNNNNGG	5 cut(s)	43, 178, 380, 410, 557
AflIII	ACRYGT	1 cut(s)	1281
AgsI	TTSAA	9 cut(s)	110, 245, 526, 577, 616, 632, 804, 994, 1184
AleI	CACNNNNGTG	1 cut(s)	1073
Alw21I	GWGCWC	1 cut(s)	1070
Alw44I	GTGCAC	1 cut(s)	1066
AlwI	GGATC	3 cut(s)	70, 70, 163
AlwNI	CAGNNNCTG	1 cut(s)	410
Aor51HI	AGCGCT	1 cut(s)	88
AoxI	GGCC	2 cut(s)	981, 1263
ApaLI	GTGCAC	1 cut(s)	1066
ApeKI	GCWGC	5 cut(s)	238, 592, 848, 1019, 1349
ApoI	RAATTY	2 cut(s)	281, 608
Asp718I	GGTACC	1 cut(s)	790
AspLEI	GCGC	2 cut(s)	89, 238
AspS9I	GGNCC	1 cut(s)	123
AsuHPI	GGTGA	4 cut(s)	57, 379, 728, 974
AvaII	GGWCC	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	1070
BanI	GGYRCC	1 cut(s)	790
BanII	GRGCYC	1 cut(s)	1123
BarI	GAAGNNNNNNTAC	6 cut(s)	1094, 1126, 1202, 1234, 1317, 1349
BbsI	GAAGAC	1 cut(s)	645
Bbv12I	GWGCWC	1 cut(s)	1070
BbvI	GCAGC	5 cut(s)	250, 579, 835, 1031, 1361
BccI	CCATC	3 cut(s)	143, 290, 593
BceAI	ACGGC	1 cut(s)	1291
BfoI	RGCGCY	1 cut(s)	90
BglII	AGATCT	1 cut(s)	519
BisI	GCNGC	5 cut(s)	239, 593, 849, 1020, 1350
BlpI	GCTNAGC	1 cut(s)	1158
BlsI	GCNGC	5 cut(s)	240, 594, 850, 1021, 1351
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	2 cut(s)	760, 792
BmrI	ACTGGG	1 cut(s)	594
BmsI	GCATC	4 cut(s)	7, 1006, 1338, 1348
BmuI	ACTGGG	1 cut(s)	594
BpiI	GAAGAC	1 cut(s)	645
BpmI	CTGGAG	1 cut(s)	1235
Bpu10I	CCTNAGC	1 cut(s)	1122
Bpu1102I	GCTNAGC	1 cut(s)	1158
BpuEI	CTTGAG	1 cut(s)	1106
BsaJI	CCNNGG	2 cut(s)	762, 1071
Bsc4I	CCNNNNNNNGG	5 cut(s)	43, 178, 380, 410, 557
Bse1I	ACTGG	2 cut(s)	126, 589
Bse3DI	GCAATG	2 cut(s)	92, 1327
BseDI	CCNNGG	2 cut(s)	762, 1071
BseGI	GGATG	4 cut(s)	22, 154, 1210, 1329
BseLI	CCNNNNNNNGG	5 cut(s)	43, 178, 380, 410, 557
BseMI	GCAATG	2 cut(s)	92, 1327
BseMII	CTCAG	4 cut(s)	30, 408, 1136, 1149
BseNI	ACTGG	2 cut(s)	126, 589
BseRI	GAGGAG	1 cut(s)	983
BseSI	GKGCMC	1 cut(s)	1070
BseXI	GCAGC	5 cut(s)	250, 579, 835, 1031, 1361
BseYI	CCCAGC	2 cut(s)	83, 771
BsgI	GTGCAG	1 cut(s)	444
BshFI	GGCC	2 cut(s)	983, 1265
BshNI	GGYRCC	1 cut(s)	790
BsiHKAI	GWGCWC	1 cut(s)	1070
BslFI	GGGAC	2 cut(s)	404, 754
BslI	CCNNNNNNNGG	5 cut(s)	43, 178, 380, 410, 557
BsmFI	GGGAC	2 cut(s)	404, 754
BsmI	GAATGC	1 cut(s)	880
BsnI	GGCC	2 cut(s)	983, 1265
Bsp1286I	GDGCHC	2 cut(s)	1070, 1123
Bsp143I	GATC	4 cut(s)	62, 75, 168, 519
Bsp1720I	GCTNAGC	1 cut(s)	1158
BspACI	CCGC	2 cut(s)	851, 890
BspANI	GGCC	2 cut(s)	983, 1265
BspCNI	CTCAG	4 cut(s)	31, 409, 1135, 1150
BspLI	GGNNCC	2 cut(s)	760, 792
BspPI	GGATC	3 cut(s)	70, 70, 163
BspQI	GCTCTTC	1 cut(s)	660
BspT107I	GGYRCC	1 cut(s)	790
BsrDI	GCAATG	2 cut(s)	92, 1327
BsrI	ACTGG	2 cut(s)	126, 589
BssECI	CCNNGG	2 cut(s)	762, 1071
BssMI	GATC	4 cut(s)	62, 75, 168, 519
BssT1I	CCWWGG	2 cut(s)	762, 1071
Bst4CI	ACNGT	5 cut(s)	289, 367, 481, 808, 1382
Bst6I	CTCTTC	3 cut(s)	450, 660, 960
BstC8I	GCNNGC	5 cut(s)	405, 1003, 1024, 1028, 1140
BstDEI	CTNAG	5 cut(s)	39, 417, 1122, 1158, 1299
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstF5I	GGATG	4 cut(s)	22, 154, 1210, 1329
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	2 cut(s)	89, 238
BstKTI	GATC	4 cut(s)	65, 78, 171, 522
BstMBI	GATC	4 cut(s)	62, 75, 168, 519
BstMWI	GCNNNNNNNGC	2 cut(s)	1326, 1358
BstNSI	RCATGY	1 cut(s)	1285
BstSLI	GKGCMC	1 cut(s)	1070
BstV1I	GCAGC	5 cut(s)	250, 579, 835, 1031, 1361
BstV2I	GAAGAC	1 cut(s)	645
BstX2I	RGATCY	2 cut(s)	168, 519
BstXI	CCANNNNNNTGG	1 cut(s)	1078
BstYI	RGATCY	2 cut(s)	168, 519
BsuRI	GGCC	2 cut(s)	983, 1265
BtsCI	GGATG	4 cut(s)	22, 154, 1210, 1329
BtsIMutI	CAGTG	2 cut(s)	285, 1226
Cac8I	GCNNGC	5 cut(s)	405, 1003, 1024, 1028, 1140
CaiI	CAGNNNCTG	1 cut(s)	410
CfoI	GCGC	2 cut(s)	89, 238
Cfr13I	GGNCC	1 cut(s)	123
CseI	GACGC	1 cut(s)	536
Csp6I	GTAC	6 cut(s)	356, 698, 791, 937, 1111, 1219
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviAII	CATG	4 cut(s)	471, 626, 1282, 1369
CviQI	GTAC	6 cut(s)	356, 698, 791, 937, 1111, 1219
DdeI	CTNAG	5 cut(s)	39, 417, 1122, 1158, 1299
DpnI	GATC	4 cut(s)	64, 77, 170, 521
DpnII	GATC	4 cut(s)	62, 75, 168, 519
Eam1104I	CTCTTC	3 cut(s)	450, 660, 960
EarI	CTCTTC	3 cut(s)	450, 660, 960
Eco130I	CCWWGG	2 cut(s)	762, 1071
Eco24I	GRGCYC	1 cut(s)	1123
Eco47I	GGWCC	1 cut(s)	123
Eco47III	AGCGCT	1 cut(s)	88
Eco57I	CTGAAG	4 cut(s)	507, 1052, 1058, 1250
EcoNI	CCTNNNNNAGG	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	281
EcoT14I	CCWWGG	2 cut(s)	762, 1071
EcoT22I	ATGCAT	1 cut(s)	754
EcoT38I	GRGCYC	1 cut(s)	1123
ErhI	CCWWGG	2 cut(s)	762, 1071
FaeI	CATG	4 cut(s)	474, 629, 1285, 1372
FalI	AAGNNNNNCTT	2 cut(s)	506, 538
FaqI	GGGAC	2 cut(s)	404, 754
FatI	CATG	4 cut(s)	470, 625, 1281, 1368
FauI	CCCGC	2 cut(s)	844, 883
FauNDI	CATATG	1 cut(s)	140
FblI	GTMKAC	1 cut(s)	1377
Fnu4HI	GCNGC	5 cut(s)	239, 593, 849, 1020, 1350
FokI	GGATG	4 cut(s)	29, 161, 1217, 1316
FriOI	GRGCYC	1 cut(s)	1123
Fsp4HI	GCNGC	5 cut(s)	239, 593, 849, 1020, 1350
GlaI	GCGC	2 cut(s)	88, 237
GluI	GCNGC	5 cut(s)	239, 593, 849, 1020, 1350
GsaI	CCCAGC	2 cut(s)	87, 775
GsuI	CTGGAG	1 cut(s)	1235
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	983, 1265
HgaI	GACGC	1 cut(s)	536
HhaI	GCGC	2 cut(s)	89, 238
Hin1II	CATG	4 cut(s)	474, 629, 1285, 1372
Hin6I	GCGC	2 cut(s)	87, 236
HinP1I	GCGC	2 cut(s)	87, 236
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HinfI	GANTC	3 cut(s)	56, 767, 1307
HphI	GGTGA	4 cut(s)	57, 379, 728, 974
Hpy166II	GTNNAC	4 cut(s)	123, 811, 1068, 1378
Hpy188I	TCNGA	3 cut(s)	418, 487, 1306
Hpy188III	TCNNGA	8 cut(s)	60, 163, 172, 523, 730, 1171, 1181, 1313
Hpy8I	GTNNAC	4 cut(s)	123, 811, 1068, 1378
HpyCH4III	ACNGT	5 cut(s)	289, 367, 481, 808, 1382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1326, 1358
HpyF3I	CTNAG	5 cut(s)	39, 417, 1122, 1158, 1299
Hsp92II	CATG	4 cut(s)	474, 629, 1285, 1372
HspAI	GCGC	2 cut(s)	87, 236
KpnI	GGTACC	1 cut(s)	794
Kzo9I	GATC	4 cut(s)	62, 75, 168, 519
LguI	GCTCTTC	1 cut(s)	660
LmnI	GCTCC	1 cut(s)	764
Lsp1109I	GCAGC	5 cut(s)	250, 579, 835, 1031, 1361
LweI	GCATC	4 cut(s)	7, 1006, 1338, 1348
MaeIII	GTNAC	2 cut(s)	299, 490
MalI	GATC	4 cut(s)	64, 77, 170, 521
MboI	GATC	4 cut(s)	62, 75, 168, 519
MflI	RGATCY	2 cut(s)	168, 519
MhlI	GDGCHC	2 cut(s)	1070, 1123
MlyI	GAGTC	3 cut(s)	65, 776, 1301
MmeI	TCCRAC	3 cut(s)	95, 1059, 1284
Mph1103I	ATGCAT	1 cut(s)	754
MseI	TTAA	8 cut(s)	225, 330, 362, 513, 570, 654, 885, 1011
MslI	CAYNNNNRTG	1 cut(s)	1073
MspA1I	CMGCKG	1 cut(s)	1138
Mva1269I	GAATGC	1 cut(s)	880
MwoI	GCNNNNNNNGC	2 cut(s)	1326, 1358
NdeI	CATATG	1 cut(s)	140
NdeII	GATC	4 cut(s)	62, 75, 168, 519
NlaIII	CATG	4 cut(s)	474, 629, 1285, 1372
NlaIV	GGNNCC	2 cut(s)	760, 792
NmuCI	GTSAC	1 cut(s)	490
NsiI	ATGCAT	1 cut(s)	754
NspI	RCATGY	1 cut(s)	1285
OliI	CACNNNNGTG	1 cut(s)	1073
PciI	ACATGT	1 cut(s)	1281
PciSI	GCTCTTC	1 cut(s)	660
PctI	GAATGC	1 cut(s)	880
PflFI	GACNNNGTC	1 cut(s)	1300
PflMI	CCANNNNNTGG	2 cut(s)	380, 410
PkrI	GCNGC	5 cut(s)	240, 594, 850, 1021, 1351
PleI	GAGTC	3 cut(s)	64, 775, 1301
PpsI	GAGTC	3 cut(s)	64, 775, 1301
PscI	ACATGT	1 cut(s)	1281
PsiI	TTATAA	1 cut(s)	1047
PspFI	CCCAGC	2 cut(s)	83, 771
PspN4I	GGNNCC	2 cut(s)	760, 792
PspPI	GGNCC	1 cut(s)	123
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	2 cut(s)	168, 519
PsyI	GACNNNGTC	1 cut(s)	1300
PvuII	CAGCTG	1 cut(s)	1138
RsaI	GTAC	6 cut(s)	357, 699, 792, 938, 1112, 1220
RsaNI	GTAC	6 cut(s)	356, 698, 791, 937, 1111, 1219
RseI	CAYNNNNRTG	1 cut(s)	1073
SapI	GCTCTTC	1 cut(s)	660
SaqAI	TTAA	8 cut(s)	225, 330, 362, 513, 570, 654, 885, 1011
SatI	GCNGC	5 cut(s)	239, 593, 849, 1020, 1350
Sau3AI	GATC	4 cut(s)	62, 75, 168, 519
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	3 cut(s)	65, 776, 1301
SduI	GDGCHC	2 cut(s)	1070, 1123
SfaNI	GCATC	4 cut(s)	7, 1006, 1338, 1348
SinI	GGWCC	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	1073
SmlI	CTYRAG	1 cut(s)	1085
SmoI	CTYRAG	1 cut(s)	1085
SsiI	CCGC	2 cut(s)	851, 890
StyI	CCWWGG	2 cut(s)	762, 1071
TaaI	ACNGT	5 cut(s)	289, 367, 481, 808, 1382
TaqI	TCGA	3 cut(s)	210, 648, 942
TatI	WGTACW	2 cut(s)	936, 1218
Tru1I	TTAA	8 cut(s)	225, 330, 362, 513, 570, 654, 885, 1011
Tru9I	TTAA	8 cut(s)	225, 330, 362, 513, 570, 654, 885, 1011
TscAI	CASTG	2 cut(s)	292, 1233
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	5 cut(s)	238, 592, 848, 1019, 1349
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	8 cut(s)	17, 228, 353, 437, 570, 678, 722, 1256
TspGWI	ACGGA	1 cut(s)	715
TspRI	CASTG	2 cut(s)	292, 1233
Tth111I	GACNNNGTC	1 cut(s)	1300
Van91I	CCANNNNNTGG	2 cut(s)	380, 410
VneI	GTGCAC	1 cut(s)	1066
VpaK11BI	GGWCC	1 cut(s)	123
XagI	CCTNNNNNAGG	1 cut(s)	176
XapI	RAATTY	2 cut(s)	281, 608
XceI	RCATGY	1 cut(s)	1285
XmiI	GTMKAC	1 cut(s)	1377
Zsp2I	ATGCAT	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.