Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002631

Physical Location & Seq

Genomic Coordinates Reverse (-)

22923909 .. 22927148

Gene Structure 3240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGATTCCGCTTCGTGCTCATTTCTCCGAGCTCAGCCCTTTTCTTCTGCCGCCACCATTTTCCCGCCAGGTAACAACAACACTGCCCGCTTCTTCGCCCTCCCGAAGAACAACCGCAACCCCAACTTGGTCCCTCTATTTTCCTCCACTTTCCCAAGAAACCCAAATTTTCCCGGAAAATGTCTGCACTTCAATCGGTTCTCCGCTTTCAGCTCTCTCTGCGGCACTCAGGACCAGAACCCATCTCAGGAGCTCGCTGTTCTTCTCGAAGTCGACGGGGTTCTTATGGATGCTTATCTGTTGGGGAACCGCCAAAGCTTCAATGCAGCATTTAAGAAGCTCGGGCATCACTGTACAAATTGGACAGAGCCTGTTTACTTGGACCTCCTAAGGAAGAGTGCTGGTGATGAGGAAAAGATGGTGAATTTGTATTTTAATCAGATCGGTTGGCCTAGTTCATTGCCGACAACTGAGAAGGAGTCATTTGTGAAAAATGTCCTGCAAAAGAAGAAAATTGCAATGGATGAGTTTCTGATGTCAGAAAGTTTGACTTTACGACCTGGAGTTGAAGAGTTTATTGATGATGCATACAAGGAAGGAGTACCTGTTGTCGTACTGACAACCTATAGTAAGAGTGGGAATCAAATTGCTAGATCAATTGTTGAAAAGCTTGGCGAGGAAAGAGTTTCGAAGCTAAAGATTGTCGGAGATAAGGAGGTGTTACAGAGTTTGTTTAACCAACTAGTAAATGATATAGCATTATCTTCTGGTATGGATGAGCAACTATCTAAGGAGGCAATAAAAGCAGTTTCTGCTGAGAAAGAAAGGATTTTTAAGGAGCTTGCATTATTGCTAAAGCTGATTTTAGATATTGATACTCGCCCGCCTGAAAGCTTAGAGAAGATCATTGTTGCATTGCAAGCCGGGGCAGAAGTTGCCGGTCTACCTGTATGCGATTGTGTTCTTATTGCAGGAAGCCAGTCCGGTGTGGCTGGAGCTGAGCGAGTGGGCATGCCATGTGTTGTTTTAAGAAGCAGTTTGACGGCTAGAGATGAGTTCCCTTCGGCAAATGCGATAATGGATGGGTTTGGAGGAGCAGAGCTGACCATCCCTAAACTGCGCAACAAGAGATGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

380

Amino Acids

41.65

Weight (kDa)

6.08

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45170 AT5G45170
fragaria_vesca	FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870
malus_domestica	MD10G1237500.v1.1 MD10G1237600.v1.1 MD10G1238000.v1.1
prunus_persica	Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1
pyrus_communis	pycom10g19890 pycom10g19900 pycom10g19910
rosa_chinensis	RchiOBHm_Chr5g0019301 RchiOBHm_Chr5g0019331 RchiOBHm_Chr5g0019341
rosa_laevigata	RLG00000032436 RLG00000032439
rosa_multiflora	Rmu_sc0002141.1_g000019 Rmu_sc0002759.1_g000029 Rmu_sc0005292.1_g000001 Rmu_sc0005292.1_g000024
rosa_roxburghii	Rroxscaffold_1G00058680 Rroxscaffold_1G00058690 Rroxscaffold_1G00074220 Rroxscaffold_1G00074230
rosa_rugosa	Rorug01G0008700 Rorug05G0049500 Rorug05G0050700
rosa_samantha	Rh5AG140600 Rh5BG139600 Rh5CG150900 Rh5CG151300 Rh5DG140100 Rh5DG140500
rosa_wichuraiana	Rw5G012500 Rw5G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1121
AccI	GTMKAC	2 cut(s)	273, 943
AciI	CCGC	9 cut(s)	9, 51, 65, 88, 115, 204, 222, 310, 884
AcsI	RAATTY	2 cut(s)	166, 424
AfaI	GTAC	3 cut(s)	355, 603, 615
AfiI	CCNNNNNNNGG	2 cut(s)	127, 247
AgsI	TTSAA	4 cut(s)	193, 322, 569, 665
AhlI	ACTAGT	1 cut(s)	742
AjnI	CCWGG	2 cut(s)	67, 559
Alw21I	GWGCWC	3 cut(s)	20, 34, 255
AlwNI	CAGNNNCTG	2 cut(s)	371, 812
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	1 cut(s)	449
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	2 cut(s)	166, 424
AspLEI	GCGC	1 cut(s)	1122
AspS9I	GGNCC	3 cut(s)	130, 232, 382
AsuC2I	CCSGG	2 cut(s)	174, 925
AsuHPI	GGTGA	2 cut(s)	416, 433
AsuII	TTCGAA	1 cut(s)	689
AvaI	CYCGRG	1 cut(s)	341
AvaII	GGWCC	3 cut(s)	130, 232, 382
AxyI	CCTNAGG	1 cut(s)	389
BanII	GRGCYC	2 cut(s)	34, 255
Bbv12I	GWGCWC	3 cut(s)	20, 34, 255
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	5 cut(s)	250, 412, 1076, 1115, 1125
BceAI	ACGGC	1 cut(s)	1059
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	2 cut(s)	69, 561
BcnI	CCSGG	2 cut(s)	174, 925
BcuI	ACTAGT	1 cut(s)	742
BfaI	CTAG	4 cut(s)	453, 651, 743, 1047
BfmI	CTRYAG	1 cut(s)	625
BisI	GCNGC	3 cut(s)	51, 223, 327
BlpI	GCTNAGC	2 cut(s)	33, 999
BlsI	GCNGC	3 cut(s)	52, 224, 328
Bme1390I	CCNGG	4 cut(s)	69, 174, 561, 925
Bme18I	GGWCC	3 cut(s)	130, 232, 382
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	3 cut(s)	130, 232, 382
BmiI	GGNNCC	2 cut(s)	132, 308
BmrFI	CCNGG	4 cut(s)	69, 174, 561, 925
BmsI	GCATC	3 cut(s)	280, 355, 574
BpmI	CTGGAG	2 cut(s)	582, 1014
Bpu1102I	GCTNAGC	2 cut(s)	33, 999
Bpu14I	TTCGAA	1 cut(s)	689
BpuMI	CCSGG	2 cut(s)	174, 925
BsaBI	GATNNNNATC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	924
BsaWI	WCCGGW	1 cut(s)	983
BsaXI	ACNNNNNCTCC	2 cut(s)	591, 621
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 247
Bse118I	RCCGGY	1 cut(s)	938
Bse1I	ACTGG	1 cut(s)	979
Bse21I	CCTNAGG	1 cut(s)	389
Bse3DI	GCAATG	3 cut(s)	458, 525, 914
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	69, 561
BseDI	CCNNGG	1 cut(s)	924
BseGI	GGATG	5 cut(s)	295, 529, 781, 1087, 1107
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	2 cut(s)	127, 247
BseMI	GCAATG	3 cut(s)	458, 525, 914
BseMII	CTCAG	6 cut(s)	47, 242, 260, 462, 807, 990
BseNI	ACTGG	1 cut(s)	979
BseRI	GAGGAG	1 cut(s)	1107
BseXI	GCAGC	1 cut(s)	338
BsgI	GTGCAG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	451
BsiHKAI	GWGCWC	3 cut(s)	20, 34, 255
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	4 cut(s)	174, 924, 939, 984
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	2 cut(s)	127, 247
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	451
BsoBI	CYCGRG	1 cut(s)	341
Bsp119I	TTCGAA	1 cut(s)	689
Bsp1286I	GDGCHC	3 cut(s)	20, 34, 255
Bsp1407I	TGTACA	1 cut(s)	353
Bsp143I	GATC	3 cut(s)	441, 653, 903
Bsp1720I	GCTNAGC	2 cut(s)	33, 999
BspACI	CCGC	9 cut(s)	9, 51, 65, 88, 115, 204, 222, 310, 884
BspANI	GGCC	1 cut(s)	451
BspCNI	CTCAG	6 cut(s)	46, 241, 259, 463, 808, 991
BspHI	TCATGA	1 cut(s)	1136
BspLI	GGNNCC	2 cut(s)	132, 308
BspT104I	TTCGAA	1 cut(s)	689
BsrDI	GCAATG	3 cut(s)	458, 525, 914
BsrFI	RCCGGY	1 cut(s)	938
BsrGI	TGTACA	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	979
BssAI	RCCGGY	1 cut(s)	938
BssECI	CCNNGG	1 cut(s)	924
BssMI	GATC	3 cut(s)	441, 653, 903
Bst2UI	CCWGG	2 cut(s)	69, 561
Bst4CI	ACNGT	1 cut(s)	353
Bst6I	CTCTTC	2 cut(s)	389, 564
BstAPI	GCANNNNNTGC	2 cut(s)	812, 935
BstAUI	TGTACA	1 cut(s)	353
BstBI	TTCGAA	1 cut(s)	689
BstC8I	GCNNGC	6 cut(s)	88, 255, 843, 884, 921, 1013
BstDEI	CTNAG	9 cut(s)	33, 228, 246, 389, 471, 789, 816, 895, 999
BstF5I	GGATG	5 cut(s)	295, 529, 781, 1087, 1107
BstHHI	GCGC	1 cut(s)	1122
BstKTI	GATC	3 cut(s)	444, 656, 906
BstMBI	GATC	3 cut(s)	441, 653, 903
BstMWI	GCNNNNNNNGC	5 cut(s)	219, 803, 812, 920, 935
BstNI	CCWGG	2 cut(s)	69, 561
BstNSI	RCATGY	1 cut(s)	1015
BstSCI	CCNGG	4 cut(s)	67, 172, 559, 923
BstSFI	CTRYAG	1 cut(s)	625
BstV1I	GCAGC	1 cut(s)	338
Bsu36I	CCTNAGG	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	451
BtsCI	GGATG	5 cut(s)	295, 529, 781, 1087, 1107
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	2 cut(s)	81, 349
Cac8I	GCNNGC	6 cut(s)	88, 255, 843, 884, 921, 1013
CaiI	CAGNNNCTG	2 cut(s)	371, 812
CciI	TCATGA	1 cut(s)	1136
CfoI	GCGC	1 cut(s)	1122
Cfr10I	RCCGGY	1 cut(s)	938
Cfr13I	GGNCC	3 cut(s)	130, 232, 382
Csp6I	GTAC	3 cut(s)	354, 602, 614
CviAII	CATG	3 cut(s)	1012, 1017, 1137
CviQI	GTAC	3 cut(s)	354, 602, 614
DdeI	CTNAG	9 cut(s)	33, 228, 246, 389, 471, 789, 816, 895, 999
DpnI	GATC	3 cut(s)	443, 655, 905
DpnII	GATC	3 cut(s)	441, 653, 903
Eam1104I	CTCTTC	2 cut(s)	389, 564
EarI	CTCTTC	2 cut(s)	389, 564
Ecl136II	GAGCTC	2 cut(s)	32, 253
Eco24I	GRGCYC	2 cut(s)	34, 255
Eco47I	GGWCC	3 cut(s)	130, 232, 382
Eco53kI	GAGCTC	2 cut(s)	32, 253
Eco81I	CCTNAGG	1 cut(s)	389
Eco88I	CYCGRG	1 cut(s)	341
EcoICRI	GAGCTC	2 cut(s)	32, 253
EcoRII	CCWGG	2 cut(s)	67, 559
EcoT22I	ATGCAT	1 cut(s)	589
EcoT38I	GRGCYC	2 cut(s)	34, 255
FaeI	CATG	3 cut(s)	1015, 1020, 1140
FaiI	YATR	9 cut(s)	287, 589, 627, 755, 773, 952, 1013, 1018, 1138
FalI	AAGNNNNNCTT	2 cut(s)	535, 567
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	3 cut(s)	1011, 1016, 1136
FauI	CCCGC	3 cut(s)	72, 95, 891
FblI	GTMKAC	2 cut(s)	273, 943
Fnu4HI	GCNGC	3 cut(s)	51, 223, 327
FokI	GGATG	5 cut(s)	302, 536, 788, 1094, 1094
FriOI	GRGCYC	2 cut(s)	34, 255
Fsp4HI	GCNGC	3 cut(s)	51, 223, 327
FspBI	CTAG	4 cut(s)	453, 651, 743, 1047
FspI	TGCGCA	1 cut(s)	1121
GlaI	GCGC	1 cut(s)	1121
GluI	GCNGC	3 cut(s)	51, 223, 327
GsuI	CTGGAG	2 cut(s)	582, 1014
HaeIII	GGCC	1 cut(s)	451
HapII	CCGG	4 cut(s)	174, 924, 939, 984
HhaI	GCGC	1 cut(s)	1122
Hin1II	CATG	3 cut(s)	1015, 1020, 1140
Hin6I	GCGC	1 cut(s)	1120
HinP1I	GCGC	1 cut(s)	1120
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HindIII	AAGCTT	3 cut(s)	316, 668, 892
HinfI	GANTC	3 cut(s)	5, 479, 640
HpaII	CCGG	4 cut(s)	174, 924, 939, 984
HphI	GGTGA	2 cut(s)	416, 433
Hpy166II	GTNNAC	3 cut(s)	274, 376, 944
Hpy188I	TCNGA	5 cut(s)	29, 441, 534, 541, 707
Hpy188III	TCNNGA	5 cut(s)	103, 230, 248, 266, 1137
Hpy8I	GTNNAC	3 cut(s)	274, 376, 944
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	3 cut(s)	469, 590, 1071
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4V	TGCA	9 cut(s)	187, 326, 502, 518, 587, 845, 914, 919, 971
HpyF10VI	GCNNNNNNNGC	5 cut(s)	219, 803, 812, 920, 935
HpyF3I	CTNAG	9 cut(s)	33, 228, 246, 389, 471, 789, 816, 895, 999
Hsp92II	CATG	3 cut(s)	1015, 1020, 1140
HspAI	GCGC	1 cut(s)	1120
Kzo9I	GATC	3 cut(s)	441, 653, 903
LmnI	GCTCC	4 cut(s)	250, 838, 995, 1094
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	3 cut(s)	280, 355, 574
MaeI	CTAG	4 cut(s)	453, 651, 743, 1047
MaeIII	GTNAC	2 cut(s)	71, 720
MalI	GATC	3 cut(s)	443, 655, 905
MboI	GATC	3 cut(s)	441, 653, 903
MboII	GAAGA	9 cut(s)	36, 85, 118, 254, 406, 520, 581, 756, 913
MfeI	CAATTG	1 cut(s)	657
MhlI	GDGCHC	3 cut(s)	20, 34, 255
MluCI	AATT	6 cut(s)	166, 358, 424, 513, 645, 657
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	685
MnlI	CCTC	9 cut(s)	110, 144, 154, 395, 403, 670, 709, 787, 1085
Mph1103I	ATGCAT	1 cut(s)	589
MseI	TTAA	5 cut(s)	333, 435, 735, 834, 1028
MspI	CCGG	4 cut(s)	174, 924, 939, 984
MspR9I	CCNGG	4 cut(s)	69, 174, 561, 925
MunI	CAATTG	1 cut(s)	657
MvaI	CCWGG	2 cut(s)	69, 561
MwoI	GCNNNNNNNGC	5 cut(s)	219, 803, 812, 920, 935
NciI	CCSGG	2 cut(s)	174, 925
NdeII	GATC	3 cut(s)	441, 653, 903
NlaIII	CATG	3 cut(s)	1015, 1020, 1140
NlaIV	GGNNCC	2 cut(s)	132, 308
NsbI	TGCGCA	1 cut(s)	1121
NsiI	ATGCAT	1 cut(s)	589
NspI	RCATGY	1 cut(s)	1015
NspV	TTCGAA	1 cut(s)	689
PaeI	GCATGC	1 cut(s)	1015
PagI	TCATGA	1 cut(s)	1136
PcsI	WCGNNNNNNNCGW	1 cut(s)	1070
PfeI	GAWTC	2 cut(s)	5, 640
PfoI	TCCNGGA	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	52, 224, 328
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
Psp124BI	GAGCTC	2 cut(s)	34, 255
Psp6I	CCWGG	2 cut(s)	67, 559
PspGI	CCWGG	2 cut(s)	67, 559
PspN4I	GGNNCC	2 cut(s)	132, 308
PspPI	GGNCC	3 cut(s)	130, 232, 382
PstNI	CAGNNNCTG	2 cut(s)	371, 812
RsaI	GTAC	3 cut(s)	355, 603, 615
RsaNI	GTAC	3 cut(s)	354, 602, 614
SacI	GAGCTC	2 cut(s)	34, 255
SalI	GTCGAC	1 cut(s)	272
SaqAI	TTAA	5 cut(s)	333, 435, 735, 834, 1028
SatI	GCNGC	3 cut(s)	51, 223, 327
Sau3AI	GATC	3 cut(s)	441, 653, 903
Sau96I	GGNCC	3 cut(s)	130, 232, 382
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	4 cut(s)	69, 174, 561, 925
SduI	GDGCHC	3 cut(s)	20, 34, 255
SfaNI	GCATC	3 cut(s)	280, 355, 574
SfcI	CTRYAG	1 cut(s)	625
SfuI	TTCGAA	1 cut(s)	689
SinI	GGWCC	3 cut(s)	130, 232, 382
SpeI	ACTAGT	1 cut(s)	742
SphI	GCATGC	1 cut(s)	1015
Sse9I	AATT	6 cut(s)	166, 358, 424, 513, 645, 657
SsiI	CCGC	9 cut(s)	9, 51, 65, 88, 115, 204, 222, 310, 884
SspMI	CTAG	4 cut(s)	453, 651, 743, 1047
SstI	GAGCTC	2 cut(s)	34, 255
StyD4I	CCNGG	4 cut(s)	67, 172, 559, 923
TaaI	ACNGT	1 cut(s)	353
TaqI	TCGA	3 cut(s)	267, 273, 689
TasI	AATT	6 cut(s)	166, 358, 424, 513, 645, 657
TatI	WGTACW	1 cut(s)	353
TauI	GCSGC	2 cut(s)	53, 225
TfiI	GAWTC	2 cut(s)	5, 640
Tru1I	TTAA	5 cut(s)	333, 435, 735, 834, 1028
Tru9I	TTAA	5 cut(s)	333, 435, 735, 834, 1028
TscAI	CASTG	2 cut(s)	88, 356
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	447
TspRI	CASTG	2 cut(s)	88, 356
VpaK11BI	GGWCC	3 cut(s)	130, 232, 382
XapI	RAATTY	2 cut(s)	166, 424
XceI	RCATGY	1 cut(s)	1015
XmiI	GTMKAC	2 cut(s)	273, 943
XspI	CTAG	4 cut(s)	453, 651, 743, 1047
Zsp2I	ATGCAT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.