Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002631

Physical Location & Seq

Genomic Coordinates Reverse (-)

22931853 .. 22933859

Gene Structure 2007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGATGAGTTTCTGATGTCAGAAGGTTTGACTTTACGACCTGGAGTTGAAGAGTTTATTGATGATGCATACAAGGAAGGAATACCTGTTGTCGTACTGACAACATATAGTAAGAGTGAGAATCATATTGCCAGATCAATTGTTGAAAAGCTTGGCGAGGAAAGAGTTTCAAAGCTAAAGATTGTCGATGATGACGAGGTGTTACAGAGTTTGTATAACCAACTGGTAAATGATACAGGATTCTCTTCTCGTATAGATGAGAAACAAGCTAAGGACGCAATAAAAGCAGTTTCTGCTGAGAAACAAAGGATTGCAAAGGAGGTTGCATTAATGCTAAAGCTGACTTTAGATACTAATACTTGCCGGTCTGAAAGTGTTAGTATTTCAGCCTTAGAGAAGATCATTCTTGCATTGCGAGCTGGGGCAGAAGTTGCTGGACTACCTGTATGCGATTGTGTTCTTATTTCAGGAAGCCAGTATGGTGTGGCTGGAGCTGAGCGAGTGGGCATGCCATGTGTTGTTTTAAGAAGCAGTTTGACGGCCAGAGCTGAGTTCCCTTGGGCAAATGGGATAATGGATGGGTTTGGAGGGGCAGACCTGACCATCCCTAAACTGCTCAACAAGAGATGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

22.98

Weight (kDa)

5.02

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45170 AT5G45170
fragaria_vesca	FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870
malus_domestica	MD10G1237500.v1.1 MD10G1237600.v1.1 MD10G1238000.v1.1
prunus_persica	Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1
pyrus_communis	pycom10g19890 pycom10g19900 pycom10g19910
rosa_chinensis	RchiOBHm_Chr5g0019301 RchiOBHm_Chr5g0019331 RchiOBHm_Chr5g0019341
rosa_laevigata	RLG00000032436 RLG00000032439
rosa_multiflora	Rmu_sc0002141.1_g000019 Rmu_sc0002759.1_g000029 Rmu_sc0005292.1_g000001 Rmu_sc0005292.1_g000024
rosa_roxburghii	Rroxscaffold_1G00058680 Rroxscaffold_1G00058690 Rroxscaffold_1G00074220 Rroxscaffold_1G00074230
rosa_rugosa	Rorug01G0008700 Rorug05G0049500 Rorug05G0050700
rosa_samantha	Rh5AG140600 Rh5BG139600 Rh5CG150900 Rh5CG151300 Rh5DG140100 Rh5DG140500
rosa_wichuraiana	Rw5G012500 Rw5G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	540
AfaI	GTAC	1 cut(s)	96
AgsI	TTSAA	3 cut(s)	50, 146, 171
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	7 cut(s)	151, 175, 269, 340, 419, 494, 548
AluI	AGCT	7 cut(s)	151, 175, 269, 340, 419, 494, 548
AlwNI	CAGNNNCTG	1 cut(s)	293
AoxI	GGCC	1 cut(s)	540
AseI	ATTAAT	1 cut(s)	329
BccI	CCATC	3 cut(s)	572, 611, 621
BceAI	ACGGC	1 cut(s)	555
BciT130I	CCWGG	1 cut(s)	42
BlpI	GCTNAGC	1 cut(s)	495
Bme1390I	CCNGG	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	1 cut(s)	55
BpmI	CTGGAG	2 cut(s)	63, 510
Bpu10I	CCTNAGC	1 cut(s)	270
Bpu1102I	GCTNAGC	1 cut(s)	495
BsaJI	CCNNGG	1 cut(s)	557
Bse118I	RCCGGY	1 cut(s)	363
Bse1I	ACTGG	2 cut(s)	228, 475
Bse3DI	GCAATG	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	557
BseGI	GGATG	3 cut(s)	10, 583, 603
BseMI	GCAATG	1 cut(s)	410
BseMII	CTCAG	3 cut(s)	288, 486, 540
BseNI	ACTGG	2 cut(s)	228, 475
BseYI	CCCAGC	1 cut(s)	419
BshFI	GGCC	1 cut(s)	542
BsiSI	CCGG	1 cut(s)	364
BsnI	GGCC	1 cut(s)	542
Bsp143I	GATC	2 cut(s)	134, 399
Bsp1720I	GCTNAGC	1 cut(s)	495
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	3 cut(s)	289, 487, 541
BspHI	TCATGA	1 cut(s)	632
BsrDI	GCAATG	1 cut(s)	410
BsrFI	RCCGGY	1 cut(s)	363
BsrI	ACTGG	2 cut(s)	228, 475
BssAI	RCCGGY	1 cut(s)	363
BssECI	CCNNGG	1 cut(s)	557
BssMI	GATC	2 cut(s)	134, 399
BssT1I	CCWWGG	1 cut(s)	557
Bst2UI	CCWGG	1 cut(s)	42
Bst6I	CTCTTC	2 cut(s)	45, 250
BstAPI	GCANNNNNTGC	2 cut(s)	293, 431
BstC8I	GCNNGC	2 cut(s)	417, 509
BstDEI	CTNAG	5 cut(s)	270, 297, 391, 495, 549
BstF5I	GGATG	3 cut(s)	10, 583, 603
BstKTI	GATC	2 cut(s)	137, 402
BstMBI	GATC	2 cut(s)	134, 399
BstMWI	GCNNNNNNNGC	5 cut(s)	275, 284, 293, 416, 431
BstNI	CCWGG	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	511
BstSCI	CCNGG	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	542
BtsCI	GGATG	3 cut(s)	10, 583, 603
Cac8I	GCNNGC	2 cut(s)	417, 509
CaiI	CAGNNNCTG	1 cut(s)	293
CciI	TCATGA	1 cut(s)	632
Cfr10I	RCCGGY	1 cut(s)	363
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	3 cut(s)	508, 513, 633
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	5 cut(s)	270, 297, 391, 495, 549
DpnI	GATC	2 cut(s)	136, 401
DpnII	GATC	2 cut(s)	134, 399
EaeI	YGGCCR	1 cut(s)	540
Eam1104I	CTCTTC	2 cut(s)	45, 250
EarI	CTCTTC	2 cut(s)	45, 250
Eco130I	CCWWGG	1 cut(s)	557
EcoRII	CCWGG	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	557
EcoT22I	ATGCAT	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	557
FaeI	CATG	3 cut(s)	511, 516, 636
FatI	CATG	3 cut(s)	507, 512, 632
FokI	GGATG	3 cut(s)	17, 590, 590
GsaI	CCCAGC	1 cut(s)	423
GsuI	CTGGAG	2 cut(s)	63, 510
HaeIII	GGCC	1 cut(s)	542
HapII	CCGG	1 cut(s)	364
HgaI	GACGC	1 cut(s)	284
Hin1II	CATG	3 cut(s)	511, 516, 636
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	2 cut(s)	121, 240
HpaII	CCGG	1 cut(s)	364
Hpy188I	TCNGA	3 cut(s)	15, 22, 370
Hpy188III	TCNNGA	2 cut(s)	468, 633
HpyAV	CCTTC	2 cut(s)	17, 71
HpyCH4V	TGCA	4 cut(s)	68, 314, 326, 410
HpyF10VI	GCNNNNNNNGC	5 cut(s)	275, 284, 293, 416, 431
HpyF3I	CTNAG	5 cut(s)	270, 297, 391, 495, 549
Hsp92II	CATG	3 cut(s)	511, 516, 636
Kzo9I	GATC	2 cut(s)	134, 399
LmnI	GCTCC	1 cut(s)	491
LweI	GCATC	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	201
MalI	GATC	2 cut(s)	136, 401
MboI	GATC	2 cut(s)	134, 399
MboII	GAAGA	3 cut(s)	62, 237, 409
MfeI	CAATTG	1 cut(s)	138
MluCI	AATT	1 cut(s)	138
MnlI	CCTC	4 cut(s)	151, 190, 313, 581
Mph1103I	ATGCAT	1 cut(s)	70
MseI	TTAA	2 cut(s)	329, 524
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	1 cut(s)	42
MunI	CAATTG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	5 cut(s)	275, 284, 293, 416, 431
NdeII	GATC	2 cut(s)	134, 399
NlaIII	CATG	3 cut(s)	511, 516, 636
NsiI	ATGCAT	1 cut(s)	70
NspI	RCATGY	1 cut(s)	511
PaeI	GCATGC	1 cut(s)	511
PagI	TCATGA	1 cut(s)	632
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	121, 240
PshBI	ATTAAT	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	40
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	293
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	329, 524
Sau3AI	GATC	2 cut(s)	134, 399
ScrFI	CCNGG	1 cut(s)	42
SfaNI	GCATC	1 cut(s)	55
SphI	GCATGC	1 cut(s)	511
Sse9I	AATT	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	40
StyI	CCWWGG	1 cut(s)	557
TaqI	TCGA	1 cut(s)	186
TasI	AATT	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	121, 240
Tru1I	TTAA	2 cut(s)	329, 524
Tru9I	TTAA	2 cut(s)	329, 524
VspI	ATTAAT	1 cut(s)	329
XceI	RCATGY	1 cut(s)	511
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.