Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002631

Physical Location & Seq

Genomic Coordinates Reverse (-)

22939003 .. 22942883

Gene Structure 3881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGATTCCGCTTCGTGCTCAATTCTCCGAGCTCAGCCCTTTTCTTCTACCGCCGCCGTTTTCCCGCCAAGTAACAACACCACCGCCCGCTTCTTCGCCCTCCCGAAGAGCAACCGCAACTCCAACTTGGTCCCTCCATTTTCCTCCACTTTCCCAAGAAACTCAACTTTTCCCGGAAAATGTCTGCACTTCGATCGGTTCCCCGCATTCAGCTCGCTCTCCGGCGCTCAAGACCAGAACCCATCTCAGGAACTGGCTGTTCTTCTCGAAGTCGACGGGGTTCTTATGGATGCTTATCGGTTGGGGAACCGCCAAAGCTTCAATGCAGCATTTAAGAAGCTTGGACTTGACTGTGCAAGTTGGCCAGAGCCTGTTTACTTGGACCTCCTAAGGATGAGTGCTGGTGATGAGGAAAAGATGGTGAATTTGTATTTTAATCGGATTGGTTGGCCTAGTTCATTGCCGACAAGTGAGAAGGCGTCATTTGTGAAAAATGTTCTGCAAAAGAAGAAAATTGCAATGGATGAGTTTTTGATGTCAGAAAGTTTGACGTTACGACCTGGAGTTGAAGAGTTTATTGATGAGGCGTACAAGGAAGGAATACCTGTGGTCGTACTGACAACTTATAGTAAGAGTGGGGATCAAATTGCCAGATCAATTGTTGAAAAGCTTGGCCAGGAAAGAGTTTCAAAGCTAAAGATTGTTGGAGATAAGGAGGTAGAACAGAGTTTGTATAGCCAATTGGTAAATGATACAGGATTATCTTCTGGAATGGATGAGCAACTAGCTAAGGAGGCAATAAAATCAGTTTCTGCTGAGAAGCAAAGGATTGCAGAGGAGGTTGCATCATTGCTAAAGCTGAGTGTAGATATTGATACTAGCCCGTCTGAAAGCTTAGAGAAGATCATTGCTGCATTGCGAGCTGGGGCTGAAGTTGCCGGTCTACCTGTATGCGATTGTGTTCTTATTGCAGGAAGCCAGTCTGGTGTGGCTGGAGCTGAGCGAGTGGGCATGCCATGTGTCGTTTTAAGAAGCAGTTTGACGGCTAGAGCTGAGTTCCCTTCAGCAAATGCGATAATGGATGGGTTTGGAGGAGCAGACCTGACCATCCCTAAACTGCGAAACAAGAGACGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

380

Amino Acids

41.09

Weight (kDa)

5.8

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45170 AT5G45170
fragaria_vesca	FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870
malus_domestica	MD10G1237500.v1.1 MD10G1237600.v1.1 MD10G1238000.v1.1
prunus_persica	Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1
pyrus_communis	pycom10g19890 pycom10g19900 pycom10g19910
rosa_chinensis	RchiOBHm_Chr5g0019301 RchiOBHm_Chr5g0019331 RchiOBHm_Chr5g0019341
rosa_laevigata	RLG00000032436 RLG00000032439
rosa_multiflora	Rmu_sc0002141.1_g000019 Rmu_sc0002759.1_g000029 Rmu_sc0005292.1_g000001 Rmu_sc0005292.1_g000024
rosa_roxburghii	Rroxscaffold_1G00058680 Rroxscaffold_1G00058690 Rroxscaffold_1G00074220 Rroxscaffold_1G00074230
rosa_rugosa	Rorug01G0008700 Rorug05G0049500 Rorug05G0050700
rosa_samantha	Rh5AG140600 Rh5BG139600 Rh5CG150900 Rh5CG151300 Rh5DG140100 Rh5DG140500
rosa_wichuraiana	Rw5G012500 Rw5G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	273, 943
AciI	CCGC	9 cut(s)	9, 51, 54, 65, 84, 88, 115, 204, 310
AclWI	GGATC	1 cut(s)	648
AcoI	YGGCCR	2 cut(s)	362, 673
AcsI	RAATTY	1 cut(s)	424
AcuI	CTGAAG	2 cut(s)	951, 1047
AcyI	GRCGYC	1 cut(s)	479
AfaI	GTAC	2 cut(s)	590, 615
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	4 cut(s)	322, 569, 665, 690
AjnI	CCWGG	2 cut(s)	559, 675
Alw21I	GWGCWC	2 cut(s)	20, 34
Alw26I	GTCTC	1 cut(s)	1123
AlwI	GGATC	1 cut(s)	648
AlwNI	CAGNNNCTG	3 cut(s)	253, 371, 812
AoxI	GGCC	3 cut(s)	362, 449, 673
ApeKI	GCWGC	2 cut(s)	326, 911
ApoI	RAATTY	1 cut(s)	424
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	130, 382
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	2 cut(s)	416, 433
AvaII	GGWCC	2 cut(s)	130, 382
AxyI	CCTNAGG	1 cut(s)	389
BalI	TGGCCA	2 cut(s)	364, 675
BanII	GRGCYC	1 cut(s)	34
Bbv12I	GWGCWC	2 cut(s)	20, 34
BbvI	GCAGC	2 cut(s)	338, 898
BccI	CCATC	4 cut(s)	250, 412, 1076, 1115
BceAI	ACGGC	2 cut(s)	41, 1059
BcgI	CGANNNNNNTGC	4 cut(s)	176, 195, 210, 229
BciT130I	CCWGG	2 cut(s)	561, 677
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	1123
BfaI	CTAG	4 cut(s)	453, 785, 879, 1047
BfoI	RGCGCY	1 cut(s)	228
BisI	GCNGC	3 cut(s)	54, 327, 912
BlpI	GCTNAGC	2 cut(s)	33, 999
BlsI	GCNGC	3 cut(s)	55, 328, 913
Bme1390I	CCNGG	3 cut(s)	174, 561, 677
Bme18I	GGWCC	2 cut(s)	130, 382
BmgT120I	GGNCC	2 cut(s)	130, 382
BmiI	GGNNCC	3 cut(s)	132, 200, 308
BmrFI	CCNGG	3 cut(s)	174, 561, 677
BmsI	GCATC	2 cut(s)	280, 854
BpmI	CTGGAG	2 cut(s)	582, 1014
Bpu10I	CCTNAGC	1 cut(s)	789
Bpu1102I	GCTNAGC	2 cut(s)	33, 999
BpuEI	CTTGAG	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	174
BsaBI	GATNNNNATC	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	479
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse118I	RCCGGY	1 cut(s)	938
Bse1I	ACTGG	2 cut(s)	258, 979
Bse21I	CCTNAGG	1 cut(s)	389
Bse3DI	GCAATG	5 cut(s)	458, 525, 848, 906, 914
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	561, 677
BseGI	GGATG	6 cut(s)	295, 399, 529, 781, 1087, 1107
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMI	GCAATG	5 cut(s)	458, 525, 848, 906, 914
BseMII	CTCAG	6 cut(s)	47, 260, 807, 851, 990, 1044
BseNI	ACTGG	2 cut(s)	258, 979
BseRI	GAGGAG	2 cut(s)	851, 1107
BseXI	GCAGC	2 cut(s)	338, 898
BseYI	CCCAGC	1 cut(s)	923
BsgI	GTGCAG	1 cut(s)	170
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	3 cut(s)	364, 451, 675
BsiEI	CGRYCG	1 cut(s)	196
BsiHKAI	GWGCWC	2 cut(s)	20, 34
BsiSI	CCGG	3 cut(s)	174, 222, 939
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	1123
BsmBI	CGTCTC	1 cut(s)	1123
BsmFI	GGGAC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	206
BsnI	GGCC	3 cut(s)	364, 451, 675
Bsp1286I	GDGCHC	2 cut(s)	20, 34
Bsp143I	GATC	4 cut(s)	193, 640, 653, 903
Bsp1720I	GCTNAGC	2 cut(s)	33, 999
BspACI	CCGC	9 cut(s)	9, 51, 54, 65, 84, 88, 115, 204, 310
BspANI	GGCC	3 cut(s)	364, 451, 675
BspCNI	CTCAG	6 cut(s)	46, 259, 808, 852, 991, 1045
BspHI	TCATGA	1 cut(s)	1136
BspLI	GGNNCC	3 cut(s)	132, 200, 308
BspPI	GGATC	1 cut(s)	648
BspQI	GCTCTTC	1 cut(s)	101
BsrDI	GCAATG	5 cut(s)	458, 525, 848, 906, 914
BsrFI	RCCGGY	1 cut(s)	938
BsrI	ACTGG	2 cut(s)	258, 979
BssAI	RCCGGY	1 cut(s)	938
BssMI	GATC	4 cut(s)	193, 640, 653, 903
BssNI	GRCGYC	1 cut(s)	479
Bst2UI	CCWGG	2 cut(s)	561, 677
Bst4CI	ACNGT	2 cut(s)	353, 1134
Bst6I	CTCTTC	2 cut(s)	101, 564
BstACI	GRCGYC	1 cut(s)	479
BstC8I	GCNNGC	4 cut(s)	88, 215, 921, 1013
BstDEI	CTNAG	9 cut(s)	33, 246, 389, 789, 816, 860, 895, 999, 1053
BstF5I	GGATG	6 cut(s)	295, 399, 529, 781, 1087, 1107
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	4 cut(s)	196, 643, 656, 906
BstMAI	GTCTC	1 cut(s)	1123
BstMBI	GATC	4 cut(s)	193, 640, 653, 903
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	3 cut(s)	794, 920, 935
BstNI	CCWGG	2 cut(s)	561, 677
BstNSI	RCATGY	1 cut(s)	1015
BstSCI	CCNGG	3 cut(s)	172, 559, 675
BstV1I	GCAGC	2 cut(s)	338, 898
Bsu36I	CCTNAGG	1 cut(s)	389
BsuRI	GGCC	3 cut(s)	364, 451, 675
BtsCI	GGATG	6 cut(s)	295, 399, 529, 781, 1087, 1107
Cac8I	GCNNGC	4 cut(s)	88, 215, 921, 1013
CaiI	CAGNNNCTG	3 cut(s)	253, 371, 812
CciI	TCATGA	1 cut(s)	1136
CfoI	GCGC	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	938
Cfr13I	GGNCC	2 cut(s)	130, 382
CseI	GACGC	1 cut(s)	468
Csp6I	GTAC	2 cut(s)	589, 614
CviAII	CATG	3 cut(s)	1012, 1017, 1137
CviQI	GTAC	2 cut(s)	589, 614
DdeI	CTNAG	9 cut(s)	33, 246, 389, 789, 816, 860, 895, 999, 1053
DpnI	GATC	4 cut(s)	195, 642, 655, 905
DpnII	GATC	4 cut(s)	193, 640, 653, 903
EaeI	YGGCCR	2 cut(s)	362, 673
Eam1104I	CTCTTC	2 cut(s)	101, 564
EarI	CTCTTC	2 cut(s)	101, 564
Ecl136II	GAGCTC	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	34
Eco47I	GGWCC	2 cut(s)	130, 382
Eco53kI	GAGCTC	1 cut(s)	32
Eco57I	CTGAAG	2 cut(s)	951, 1047
Eco81I	CCTNAGG	1 cut(s)	389
EcoICRI	GAGCTC	1 cut(s)	32
EcoRII	CCWGG	2 cut(s)	559, 675
EcoT38I	GRGCYC	1 cut(s)	34
Esp3I	CGTCTC	1 cut(s)	1123
FaeI	CATG	3 cut(s)	1015, 1020, 1140
FaiI	YATR	7 cut(s)	287, 627, 735, 952, 1013, 1018, 1138
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	3 cut(s)	1011, 1016, 1136
FauI	CCCGC	3 cut(s)	72, 95, 211
FblI	GTMKAC	2 cut(s)	273, 943
Fnu4HI	GCNGC	3 cut(s)	54, 327, 912
FokI	GGATG	6 cut(s)	302, 406, 536, 788, 1094, 1094
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	3 cut(s)	54, 327, 912
FspBI	CTAG	4 cut(s)	453, 785, 879, 1047
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	3 cut(s)	54, 327, 912
GsaI	CCCAGC	1 cut(s)	927
GsuI	CTGGAG	2 cut(s)	582, 1014
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	3 cut(s)	364, 451, 675
HapII	CCGG	3 cut(s)	174, 222, 939
HgaI	GACGC	1 cut(s)	468
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	1 cut(s)	479
Hin1II	CATG	3 cut(s)	1015, 1020, 1140
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HindIII	AAGCTT	4 cut(s)	316, 338, 668, 892
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	3 cut(s)	174, 222, 939
HphI	GGTGA	2 cut(s)	416, 433
Hpy166II	GTNNAC	3 cut(s)	274, 376, 944
Hpy188I	TCNGA	4 cut(s)	29, 441, 541, 889
Hpy188III	TCNNGA	6 cut(s)	103, 230, 248, 266, 768, 1137
Hpy8I	GTNNAC	3 cut(s)	274, 376, 944
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	3 cut(s)	469, 590, 1071
HpyCH4III	ACNGT	2 cut(s)	353, 1134
HpyCH4IV	ACGT	1 cut(s)	551
HpyCH4V	TGCA	9 cut(s)	187, 326, 356, 502, 518, 833, 845, 914, 971
HpyF10VI	GCNNNNNNNGC	3 cut(s)	794, 920, 935
HpyF3I	CTNAG	9 cut(s)	33, 246, 389, 789, 816, 860, 895, 999, 1053
HpySE526I	ACGT	1 cut(s)	551
Hsp92I	GRCGYC	1 cut(s)	479
Hsp92II	CATG	3 cut(s)	1015, 1020, 1140
HspAI	GCGC	1 cut(s)	225
Kzo9I	GATC	4 cut(s)	193, 640, 653, 903
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	2 cut(s)	995, 1094
Lsp1109I	GCAGC	2 cut(s)	338, 898
LweI	GCATC	2 cut(s)	280, 854
MaeI	CTAG	4 cut(s)	453, 785, 879, 1047
MaeII	ACGT	1 cut(s)	551
MaeIII	GTNAC	2 cut(s)	71, 552
MalI	GATC	4 cut(s)	195, 642, 655, 905
MboI	GATC	4 cut(s)	193, 640, 653, 903
MboII	GAAGA	8 cut(s)	36, 85, 118, 254, 520, 581, 756, 913
MfeI	CAATTG	2 cut(s)	657, 740
MhlI	GDGCHC	2 cut(s)	20, 34
MlsI	TGGCCA	2 cut(s)	364, 675
MluCI	AATT	6 cut(s)	21, 424, 513, 645, 657, 740
MluNI	TGGCCA	2 cut(s)	364, 675
MmeI	TCCRAC	2 cut(s)	147, 685
Mox20I	TGGCCA	2 cut(s)	364, 675
MscI	TGGCCA	2 cut(s)	364, 675
MseI	TTAA	3 cut(s)	333, 435, 1028
Msp20I	TGGCCA	2 cut(s)	364, 675
MspI	CCGG	3 cut(s)	174, 222, 939
MspR9I	CCNGG	3 cut(s)	174, 561, 677
MunI	CAATTG	2 cut(s)	657, 740
Mva1269I	GAATGC	1 cut(s)	206
MvaI	CCWGG	2 cut(s)	561, 677
MwoI	GCNNNNNNNGC	3 cut(s)	794, 920, 935
NciI	CCSGG	1 cut(s)	174
NdeII	GATC	4 cut(s)	193, 640, 653, 903
NlaIII	CATG	3 cut(s)	1015, 1020, 1140
NlaIV	GGNNCC	3 cut(s)	132, 200, 308
NspI	RCATGY	1 cut(s)	1015
PaeI	GCATGC	1 cut(s)	1015
PagI	TCATGA	1 cut(s)	1136
PciSI	GCTCTTC	1 cut(s)	101
PctI	GAATGC	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	5
PfoI	TCCNGGA	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	55, 328, 913
Ple19I	CGATCG	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	34
Psp6I	CCWGG	2 cut(s)	559, 675
PspFI	CCCAGC	1 cut(s)	923
PspGI	CCWGG	2 cut(s)	559, 675
PspN4I	GGNNCC	3 cut(s)	132, 200, 308
PspPI	GGNCC	2 cut(s)	130, 382
PstNI	CAGNNNCTG	3 cut(s)	253, 371, 812
PvuI	CGATCG	1 cut(s)	196
RsaI	GTAC	2 cut(s)	590, 615
RsaNI	GTAC	2 cut(s)	589, 614
SacI	GAGCTC	1 cut(s)	34
SalI	GTCGAC	1 cut(s)	272
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	3 cut(s)	333, 435, 1028
SatI	GCNGC	3 cut(s)	54, 327, 912
Sau3AI	GATC	4 cut(s)	193, 640, 653, 903
Sau96I	GGNCC	2 cut(s)	130, 382
ScrFI	CCNGG	3 cut(s)	174, 561, 677
SduI	GDGCHC	2 cut(s)	20, 34
SfaNI	GCATC	2 cut(s)	280, 854
SinI	GGWCC	2 cut(s)	130, 382
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
SphI	GCATGC	1 cut(s)	1015
Sse9I	AATT	6 cut(s)	21, 424, 513, 645, 657, 740
SsiI	CCGC	9 cut(s)	9, 51, 54, 65, 84, 88, 115, 204, 310
SspMI	CTAG	4 cut(s)	453, 785, 879, 1047
SstI	GAGCTC	1 cut(s)	34
StyD4I	CCNGG	3 cut(s)	172, 559, 675
TaaI	ACNGT	2 cut(s)	353, 1134
TaiI	ACGT	1 cut(s)	554
TaqI	TCGA	3 cut(s)	192, 267, 273
TasI	AATT	6 cut(s)	21, 424, 513, 645, 657, 740
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	3 cut(s)	333, 435, 1028
Tru9I	TTAA	3 cut(s)	333, 435, 1028
TseI	GCWGC	2 cut(s)	326, 911
TspDTI	ATGAA	1 cut(s)	447
VpaK11BI	GGWCC	2 cut(s)	130, 382
XapI	RAATTY	1 cut(s)	424
XceI	RCATGY	1 cut(s)	1015
XmiI	GTMKAC	2 cut(s)	273, 943
XspI	CTAG	4 cut(s)	453, 785, 879, 1047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.