pycom10g21490

Belongs to the FPP GGPP synthase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
24087524 .. 24093976
6453 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1269 bp
ATGTTATTTTCGCGGGGATTTTCTCGGATTCAAAGAAGCAGCTTCAATGGGTTGTGTCGGTGTTTTCTTTCCCATCGCCGGGACCCGCAGTTCGTTGCCGCCAGCGCTTACTCTCTGTCGCTGAGTGATTCGACCCAGAAGATTATGGGTTGCAGAGAGTTCTTTTCGTGGGGCTTGCCGCCGGTTTTCCATGTTTCGAAGCACCAAATTCACCAGCAAAGCAGCTCCGTAGTTGAGGAACCACTTGACCCATTCTCACTTGTTTCTGATGAACTGTCAATTATTGCGAACAGGTTGCGGGCAATGGTAGTTGCTGAGGTCCCTAAGCTTGCCTCCGCTGCCGAGTACTTCTTTAAAATGGGGGTAGAAGGAAAGAGGTTTCGTCCCACGGTCTTATTGCTGATGTCAACTGCTTTGAATATCACTGTACCTGAACCTCCTGCGCAGTTGCGAGAGGCTTTGTCAACAGAGCTACGCGCAAGACAACAATGTATAGCAGAAGTTACAGAGATGATTCATGTGGCAAGTCTTCTACATGATGATGTATTGGATGATGCAGACACAAGGCGTGGTGTTGGTTCATTAAATTGTGTAATGGGAAATAAGTTAGCTGTTTTAGCAGGGGATTTTCTGCTTTCCCGAGCTTGTGTCGCACTTGCCTCTTTGAGAAACACAGAGGTTGTATCATTACTGTCAACGGTTGTTGAGCATCTTGTGACAGGTGAAACCATGCAAATGACTACCACATCTGATCAACGTTGTAGCATGGAATTTTATATACAGAAGACTTATTTCAAGACTGCATCACTGATTTCAAATAGTTGCAAGGCAATTGCCGTTCTTGCTGGGCATACAACTGAAGTTGCTACATTGGCTTATGAGTATGGAAAAAATCTGGGATTGGCATTTCAATTAATAGATGATGTTCTTGATTTTACGGGCACATCGGCTTCACTTGGAAAGGGCTCTTTATCTGACATCCGCCATGGCATCGTAACTGCTCCAATATTGTTTGCCATGGAAGAGTTTCCTCAGTTGCGTACGGTTGTTGAACAGGGCCTTGACAACAACCCTGCAAATATTGAACTCGCTCTTGACTATCTAGGTAGGAGCCGCGGAATACATAGGACGAGAGAGCTAGCCACAAAACATGCAAACCTTGCCGCTGCAGCAATAGAATCTCTGCCCGAGAGCGAAGACGAGAATGTCAGAAAATCAAGGAGGGCACTCCTAGATCTCACCCACATAGTCATTACAAGAACCAAGTGA

Protein Analysis

423

Amino Acids

46.49

Weight (kDa)

6.47

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
polyprenyl_synt PF00348 109 - 361 4.7e-66 Polyprenyl synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1205
Acc16I TGCGCA 1 cut(s) 444
AccII CGCG 3 cut(s) 13, 477, 1116
AclI AACGTT 1 cut(s) 757
AcsI RAATTY 2 cut(s) 207, 770
AcuI CTGAAG 1 cut(s) 879
AfaI GTAC 3 cut(s) 347, 429, 1042
AfeI AGCGCT 1 cut(s) 106
AfiI CCNNNNNNNGG 2 cut(s) 78, 79
AgsI TTSAA 8 cut(s) 32, 46, 418, 796, 816, 911, 1052, 1085
AloI GAACNNNNNNTCC 2 cut(s) 74, 106
AluBI AGCT 7 cut(s) 42, 225, 328, 472, 611, 644, 1138
AluI AGCT 7 cut(s) 42, 225, 328, 472, 611, 644, 1138
Ama87I CYCGRG 2 cut(s) 639, 1187
Aor51HI AGCGCT 1 cut(s) 106
AoxI GGCC 1 cut(s) 1057
ApeKI GCWGC 5 cut(s) 39, 222, 338, 1166, 1169
ApoI RAATTY 2 cut(s) 207, 770
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
AseI ATTAAT 1 cut(s) 914
Asp700I GAANNNNTTC 1 cut(s) 1026
AspLEI GCGC 3 cut(s) 107, 445, 479
AspS9I GGNCC 3 cut(s) 82, 319, 1057
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 3 cut(s) 203, 734, 1231
AsuII TTCGAA 1 cut(s) 197
AsuNHI GCTAGC 1 cut(s) 1138
AvaI CYCGRG 2 cut(s) 639, 1187
AvaII GGWCC 2 cut(s) 82, 319
BaeGI GKGCMC 2 cut(s) 944, 1228
BanII GRGCYC 1 cut(s) 968
BbsI GAAGAC 3 cut(s) 521, 791, 1203
BbvCI CCTCAGC 1 cut(s) 315
BbvI GCAGC 5 cut(s) 51, 234, 325, 1153, 1181
BccI CCATC 1 cut(s) 81
BceAI ACGGC 1 cut(s) 821
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BclI TGATCA 1 cut(s) 751
BcnI CCSGG 1 cut(s) 80
BfaI CTAG 3 cut(s) 1103, 1139, 1232
BfmI CTRYAG 1 cut(s) 1167
BfoI RGCGCY 1 cut(s) 108
BglII AGATCT 1 cut(s) 1234
BisI GCNGC 9 cut(s) 40, 99, 179, 223, 339, 1114, 1164, 1167, 1170
BlsI GCNGC 9 cut(s) 41, 100, 180, 224, 340, 1115, 1165, 1168, 1171
BmcAI AGTACT 1 cut(s) 347
Bme1390I CCNGG 1 cut(s) 80
Bme18I GGWCC 2 cut(s) 82, 319
BmeT110I CYCGRG 2 cut(s) 639, 1187
BmgT120I GGNCC 3 cut(s) 82, 319, 1057
BmiI GGNNCC 5 cut(s) 83, 84, 240, 321, 1112
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 4 cut(s) 544, 718, 812, 999
BmtI GCTAGC 1 cut(s) 1142
BpiI GAAGAC 3 cut(s) 521, 791, 1203
Bpu10I CCTNAGC 2 cut(s) 315, 324
Bpu14I TTCGAA 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 80
BsaJI CCNNGG 4 cut(s) 387, 985, 1017, 1114
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 79
Bse118I RCCGGY 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 309
BseDI CCNNGG 4 cut(s) 387, 985, 1017, 1114
BseGI GGATG 2 cut(s) 556, 978
BseLI CCNNNNNNNGG 2 cut(s) 78, 79
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 3 cut(s) 113, 306, 1046
BseSI GKGCMC 2 cut(s) 944, 1228
BseXI GCAGC 5 cut(s) 51, 234, 325, 1153, 1181
BseYI CCCAGC 1 cut(s) 845
Bsh1236I CGCG 3 cut(s) 13, 477, 1116
BshFI GGCC 1 cut(s) 1059
BsiHKCI CYCGRG 2 cut(s) 639, 1187
BsiSI CCGG 2 cut(s) 79, 182
BsiWI CGTACG 1 cut(s) 1040
BslFI GGGAC 3 cut(s) 95, 305, 369
BslI CCNNNNNNNGG 2 cut(s) 78, 79
BsmFI GGGAC 3 cut(s) 95, 305, 369
BsnI GGCC 1 cut(s) 1059
BsoBI CYCGRG 2 cut(s) 639, 1187
Bsp119I TTCGAA 1 cut(s) 197
Bsp1286I GDGCHC 3 cut(s) 944, 968, 1228
Bsp143I GATC 2 cut(s) 751, 1234
Bsp19I CCATGG 2 cut(s) 985, 1017
BspANI GGCC 1 cut(s) 1059
BspCNI CTCAG 3 cut(s) 114, 307, 1045
BspFNI CGCG 3 cut(s) 13, 477, 1116
BspLI GGNNCC 5 cut(s) 83, 84, 240, 321, 1112
BspMAI CTGCAG 1 cut(s) 1171
BspOI GCTAGC 1 cut(s) 1142
BspT104I TTCGAA 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 181
BssECI CCNNGG 4 cut(s) 387, 985, 1017, 1114
BssMI GATC 2 cut(s) 751, 1234
BssT1I CCWWGG 2 cut(s) 985, 1017
Bst4CI ACNGT 6 cut(s) 276, 391, 427, 693, 700, 1045
Bst6I CTCTTC 1 cut(s) 1017
BstAPI GCANNNNNTGC 1 cut(s) 1160
BstBI TTCGAA 1 cut(s) 197
BstC8I GCNNGC 5 cut(s) 103, 176, 300, 330, 1140
BstDEI CTNAG 4 cut(s) 122, 315, 324, 1032
BstDSI CCRYGG 4 cut(s) 387, 985, 1017, 1114
BstF5I GGATG 2 cut(s) 556, 978
BstFNI CGCG 3 cut(s) 13, 477, 1116
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 3 cut(s) 107, 445, 479
BstKTI GATC 2 cut(s) 754, 1237
BstMBI GATC 2 cut(s) 751, 1234
BstMWI GCNNNNNNNGC 8 cut(s) 104, 338, 617, 650, 842, 872, 1160, 1169
BstNSI RCATGY 1 cut(s) 1154
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 1167
BstSLI GKGCMC 2 cut(s) 944, 1228
BstUI CGCG 3 cut(s) 13, 477, 1116
BstV1I GCAGC 5 cut(s) 51, 234, 325, 1153, 1181
BstV2I GAAGAC 3 cut(s) 521, 791, 1203
BstX2I RGATCY 1 cut(s) 1234
BstYI RGATCY 1 cut(s) 1234
BsuRI GGCC 1 cut(s) 1059
BtgI CCRYGG 4 cut(s) 387, 985, 1017, 1114
BtgZI GCGATG 1 cut(s) 59
BtsCI GGATG 2 cut(s) 556, 978
BtsIMutI CAGTG 2 cut(s) 423, 806
Cac8I GCNNGC 5 cut(s) 103, 176, 300, 330, 1140
CfoI GCGC 3 cut(s) 107, 445, 479
Cfr10I RCCGGY 1 cut(s) 181
Cfr13I GGNCC 3 cut(s) 82, 319, 1057
Cfr42I CCGCGG 1 cut(s) 1117
Csp6I GTAC 3 cut(s) 346, 428, 1041
CviAII CATG 8 cut(s) 191, 518, 536, 730, 766, 986, 1018, 1151
CviQI GTAC 3 cut(s) 346, 428, 1041
DdeI CTNAG 4 cut(s) 122, 315, 324, 1032
DpnI GATC 2 cut(s) 753, 1236
DpnII GATC 2 cut(s) 751, 1234
DraI TTTAAA 1 cut(s) 355
DrdI GACNNNNNNGTC 1 cut(s) 1205
DseDI GACNNNNNNGTC 1 cut(s) 1205
Eam1104I CTCTTC 1 cut(s) 1017
EarI CTCTTC 1 cut(s) 1017
EciI GGCGGA 1 cut(s) 971
Eco130I CCWWGG 2 cut(s) 985, 1017
Eco24I GRGCYC 1 cut(s) 968
Eco47I GGWCC 2 cut(s) 82, 319
Eco47III AGCGCT 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 879
Eco88I CYCGRG 2 cut(s) 639, 1187
EcoO109I RGGNCCY 3 cut(s) 82, 319, 1057
EcoT14I CCWWGG 2 cut(s) 985, 1017
EcoT38I GRGCYC 1 cut(s) 968
ErhI CCWWGG 2 cut(s) 985, 1017
FaeI CATG 8 cut(s) 194, 521, 539, 733, 769, 989, 1021, 1154
FaqI GGGAC 3 cut(s) 95, 305, 369
FatI CATG 8 cut(s) 190, 517, 535, 729, 765, 985, 1017, 1150
FauI CCCGC 3 cut(s) 6, 93, 291
FbaI TGATCA 1 cut(s) 751
Fnu4HI GCNGC 9 cut(s) 40, 99, 179, 223, 339, 1114, 1164, 1167, 1170
FokI GGATG 2 cut(s) 563, 965
FriOI GRGCYC 1 cut(s) 968
Fsp4HI GCNGC 9 cut(s) 40, 99, 179, 223, 339, 1114, 1164, 1167, 1170
FspBI CTAG 3 cut(s) 1103, 1139, 1232
FspI TGCGCA 1 cut(s) 444
GlaI GCGC 3 cut(s) 106, 444, 478
GluI GCNGC 9 cut(s) 40, 99, 179, 223, 339, 1114, 1164, 1167, 1170
GsaI CCCAGC 1 cut(s) 849
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 1 cut(s) 1059
HapII CCGG 2 cut(s) 79, 182
HhaI GCGC 3 cut(s) 107, 445, 479
Hin1II CATG 8 cut(s) 194, 521, 539, 733, 769, 989, 1021, 1154
Hin6I GCGC 3 cut(s) 105, 443, 477
HinP1I GCGC 3 cut(s) 105, 443, 477
HincII GTYRAC 3 cut(s) 408, 465, 696
HindII GTYRAC 3 cut(s) 408, 465, 696
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 4 cut(s) 28, 128, 514, 1178
HpaII CCGG 2 cut(s) 79, 182
HphI GGTGA 3 cut(s) 203, 734, 1231
Hpy166II GTNNAC 3 cut(s) 408, 465, 696
Hpy188I TCNGA 5 cut(s) 27, 268, 751, 976, 1211
Hpy188III TCNNGA 4 cut(s) 639, 796, 929, 1094
Hpy8I GTNNAC 3 cut(s) 408, 465, 696
HpyAV CCTTC 1 cut(s) 362
HpyCH4III ACNGT 6 cut(s) 276, 391, 427, 693, 700, 1045
HpyCH4IV ACGT 1 cut(s) 757
HpyCH4V TGCA 8 cut(s) 153, 557, 733, 803, 825, 1076, 1154, 1169
HpyF10VI GCNNNNNNNGC 8 cut(s) 104, 338, 617, 650, 842, 872, 1160, 1169
HpyF3I CTNAG 4 cut(s) 122, 315, 324, 1032
HpySE526I ACGT 1 cut(s) 757
Hsp92II CATG 8 cut(s) 194, 521, 539, 733, 769, 989, 1021, 1154
HspAI GCGC 3 cut(s) 105, 443, 477
KflI GGGWCCC 1 cut(s) 82
Ksp22I TGATCA 1 cut(s) 751
KspI CCGCGG 1 cut(s) 1117
Kzo9I GATC 2 cut(s) 751, 1234
LmnI GCTCC 3 cut(s) 230, 1006, 1110
Lsp1109I GCAGC 5 cut(s) 51, 234, 325, 1153, 1181
LweI GCATC 4 cut(s) 544, 718, 812, 999
MaeI CTAG 3 cut(s) 1103, 1139, 1232
MaeII ACGT 1 cut(s) 757
MaeIII GTNAC 3 cut(s) 502, 715, 994
MalI GATC 2 cut(s) 753, 1236
MboI GATC 2 cut(s) 751, 1234
MboII GAAGA 5 cut(s) 151, 521, 796, 1034, 1208
MfeI CAATTG 1 cut(s) 831
MflI RGATCY 1 cut(s) 1234
MhlI GDGCHC 3 cut(s) 944, 968, 1228
MluCI AATT 6 cut(s) 207, 279, 586, 770, 831, 911
MroXI GAANNNNTTC 1 cut(s) 1026
MseI TTAA 3 cut(s) 354, 584, 914
MslI CAYNNNNRTG 2 cut(s) 540, 734
MspA1I CMGCKG 3 cut(s) 338, 1116, 1166
MspI CCGG 2 cut(s) 79, 182
MspR9I CCNGG 1 cut(s) 80
MunI CAATTG 1 cut(s) 831
MvnI CGCG 3 cut(s) 13, 477, 1116
MwoI GCNNNNNNNGC 8 cut(s) 104, 338, 617, 650, 842, 872, 1160, 1169
NciI CCSGG 1 cut(s) 80
NcoI CCATGG 2 cut(s) 985, 1017
NdeII GATC 2 cut(s) 751, 1234
NheI GCTAGC 1 cut(s) 1138
NlaIII CATG 8 cut(s) 194, 521, 539, 733, 769, 989, 1021, 1154
NlaIV GGNNCC 5 cut(s) 83, 84, 240, 321, 1112
NmeAIII GCCGAG 1 cut(s) 367
NmuCI GTSAC 1 cut(s) 715
NsbI TGCGCA 1 cut(s) 444
NspI RCATGY 1 cut(s) 1154
NspV TTCGAA 1 cut(s) 197
PdmI GAANNNNTTC 1 cut(s) 1026
PfeI GAWTC 4 cut(s) 28, 128, 514, 1178
Pfl23II CGTACG 1 cut(s) 1040
PkrI GCNGC 9 cut(s) 41, 100, 180, 224, 340, 1115, 1165, 1168, 1171
PpuMI RGGWCCY 2 cut(s) 82, 319
PshBI ATTAAT 1 cut(s) 914
Psp1406I AACGTT 1 cut(s) 757
Psp5II RGGWCCY 2 cut(s) 82, 319
PspFI CCCAGC 1 cut(s) 845
PspLI CGTACG 1 cut(s) 1040
PspN4I GGNNCC 5 cut(s) 83, 84, 240, 321, 1112
PspPI GGNCC 3 cut(s) 82, 319, 1057
PspPPI RGGWCCY 2 cut(s) 82, 319
PstI CTGCAG 1 cut(s) 1171
PsuI RGATCY 1 cut(s) 1234
RsaI GTAC 3 cut(s) 347, 429, 1042
RsaNI GTAC 3 cut(s) 346, 428, 1041
RseI CAYNNNNRTG 2 cut(s) 540, 734
SacII CCGCGG 1 cut(s) 1117
SaqAI TTAA 3 cut(s) 354, 584, 914
SatI GCNGC 9 cut(s) 40, 99, 179, 223, 339, 1114, 1164, 1167, 1170
Sau3AI GATC 2 cut(s) 751, 1234
Sau96I GGNCC 3 cut(s) 82, 319, 1057
ScaI AGTACT 1 cut(s) 347
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 3 cut(s) 944, 968, 1228
SfaNI GCATC 4 cut(s) 544, 718, 812, 999
SfcI CTRYAG 1 cut(s) 1167
Sfr303I CCGCGG 1 cut(s) 1117
SfuI TTCGAA 1 cut(s) 197
SgrBI CCGCGG 1 cut(s) 1117
SinI GGWCC 2 cut(s) 82, 319
SmiMI CAYNNNNRTG 2 cut(s) 540, 734
Sse9I AATT 6 cut(s) 207, 279, 586, 770, 831, 911
SspI AATATT 2 cut(s) 1008, 1081
SspMI CTAG 3 cut(s) 1103, 1139, 1232
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 2 cut(s) 985, 1017
TaaI ACNGT 6 cut(s) 276, 391, 427, 693, 700, 1045
TaiI ACGT 1 cut(s) 760
TaqI TCGA 2 cut(s) 131, 197
TasI AATT 6 cut(s) 207, 279, 586, 770, 831, 911
TatI WGTACW 1 cut(s) 345
TauI GCSGC 4 cut(s) 101, 181, 1116, 1166
TfiI GAWTC 4 cut(s) 28, 128, 514, 1178
Tru1I TTAA 3 cut(s) 354, 584, 914
Tru9I TTAA 3 cut(s) 354, 584, 914
TscAI CASTG 2 cut(s) 430, 813
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 5 cut(s) 39, 222, 338, 1166, 1169
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 3 cut(s) 285, 506, 570
TspGWI ACGGA 1 cut(s) 217
TspRI CASTG 2 cut(s) 430, 813
VpaK11BI GGWCC 2 cut(s) 82, 319
VspI ATTAAT 1 cut(s) 914
XapI RAATTY 2 cut(s) 207, 770
XceI RCATGY 1 cut(s) 1154
XmnI GAANNNNTTC 1 cut(s) 1026
XspI CTAG 3 cut(s) 1103, 1139, 1232
ZrmI AGTACT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.