Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0003958

Physical Location & Seq

Genomic Coordinates Forward (+)

2281370 .. 2281707

Gene Structure 338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGCCCTGGTGTTTCGGGTACAAGGTAGCCGGTGAGCTCTCTCTGCGTGTGCGGCAACTTGAAGTTCGATGTGAAACCAAAACCAAGGATAATGTGTTTGTGAATGTGGTTGCGTCGATTCAATATCGCGCCTTGCCAGACAAGATACCGGATGCTTTCTACAAGCTCTCGAACGCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

61

Amino Acids

6.89

Weight (kDa)

9.1

Isoelectric Point (pI)

16.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003958)

Species	Orthologous Gene IDs
malus_domestica	MD09G1046700.v1.1
pyrus_communis	pycom111g03710
rosa_chinensis	RchiOBHm_Chr6g0247011 RchiOBHm_Chr6g0267921 RchiOBHm_Chr6g0283081 RchiOBHm_Chr7g0224431
rosa_laevigata	RLG00000033406
rosa_multiflora	Rmu_co8039672.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052870 Rroxscaffold_1G00056630 Rroxscaffold_7G00200330
rosa_rugosa	Rorug01G0308200 Rorug05G0026500 Rorug06G0035300
rosa_samantha	Rh1CG188000 Rh1CG188100 Rh3BG368100 Rh3CG241300 Rh6AG192600 Rh6BG158200 Rh6BG158500 Rh6CG157800 Rh6CG158000 Rh6CG195900 Rh6DG143400 Rh6DG143500 Rh6DG143800 Rh6DG143900 Rh6DG144200 Rh6DG164200 Rh6DG220100
rosa_wichuraiana	Rw3G019330 Rw6G013640 Rw6G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	129
AciI	CCGC	1 cut(s)	52
AfaI	GTAC	1 cut(s)	20
AgsI	TTSAA	2 cut(s)	62, 122
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	2 cut(s)	37, 166
AluI	AGCT	2 cut(s)	37, 166
Alw21I	GWGCWC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	7
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
Bme1390I	CCNGG	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	7
BmsI	GCATC	1 cut(s)	142
BsaJI	CCNNGG	2 cut(s)	5, 84
BsaWI	WCCGGW	1 cut(s)	148
Bse118I	RCCGGY	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	2 cut(s)	5, 84
BseGI	GGATG	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	30, 149
Bsp1286I	GDGCHC	1 cut(s)	39
BspACI	CCGC	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	129
BsrFI	RCCGGY	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	5, 84
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	157
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 52
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	1 cut(s)	5
BstUI	CGCG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	157
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	1 cut(s)	29
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	19
CviJI	RGCY	3 cut(s)	29, 37, 166
CviKI_1	RGCY	3 cut(s)	29, 37, 166
CviQI	GTAC	1 cut(s)	19
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	53
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	53
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	53
HapII	CCGG	2 cut(s)	30, 149
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HinfI	GANTC	1 cut(s)	118
HpaII	CCGG	2 cut(s)	30, 149
HphI	GGTGA	1 cut(s)	44
Hpy188III	TCNNGA	1 cut(s)	169
Hpy99I	CGWCG	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 52
HspAI	GCGC	1 cut(s)	129
LpnPI	CCDG	4 cut(s)	19, 43, 150, 162
LweI	GCATC	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	39
MspI	CCGG	2 cut(s)	30, 149
MspR9I	CCNGG	1 cut(s)	7
MvaI	CCWGG	1 cut(s)	7
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	43, 52
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	54
Psp124BI	GAGCTC	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SacI	GAGCTC	1 cut(s)	39
SatI	GCNGC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	7
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	3 cut(s)	27, 39, 168
SfaNI	GCATC	1 cut(s)	142
SsiI	CCGC	1 cut(s)	52
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	5
StyI	CCWWGG	1 cut(s)	84
TaqI	TCGA	3 cut(s)	67, 116, 170
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.