pycom11g11850

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0004998
Physical Location & Seq
Forward (+)
10637362 .. 10637796
435 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 435 bp
ATGGCCAAGTCTAGAACCACAAGTACTTGCAAGAAGAATAAGAGCACTGTGAAGCTCAAAATTGTAGTGGAAAAGCTACGAAGAAGTCTATCTTTGGGAAGATCAAAATCGTCAAATTATTCCGATGGCGACTCAACGACTGTGCCGGAAGATGTTAAGGAGGGCCACTTTGCTGTGATTGCGGTGGAAGGAGATGAACCAAAGAGATTTGTGGTGGCATTGAGTTACTTGACACACTCAACTTTCTTGAAGCTATTGGAGCAAGCAGCTGAGGAGTATGGTTTTGTTCACGAAGGTGCCTTATCCATTCCTTGCCAGTCAAGCGAGCTCGAGAAGATATTAGACGATCGGCAATGGCAGGAGGAAGAAAGAGGCTCATCTAGTGATGTTAACTGGGGTTATTATAAATCTATGGTACGGAACTGGTTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

145

Amino Acids

16.36

Weight (kDa)

6.84

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 27 - 114 2.4e-19 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
AccB1I GGYRCC 1 cut(s) 296
AciI CCGC 1 cut(s) 182
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 25, 417
AgsI TTSAA 1 cut(s) 250
AleI CACNNNNGTG 1 cut(s) 294
AluBI AGCT 5 cut(s) 55, 76, 253, 269, 328
AluI AGCT 5 cut(s) 55, 76, 253, 269, 328
Alw21I GWGCWC 2 cut(s) 47, 330
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 2 cut(s) 3, 163
ApeKI GCWGC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 163
AvaI CYCGRG 1 cut(s) 329
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 296
BanII GRGCYC 1 cut(s) 330
Bbv12I GWGCWC 2 cut(s) 47, 330
BbvCI CCTCAGC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 278
BccI CCATC 1 cut(s) 119
BfaI CTAG 2 cut(s) 12, 381
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BmcAI AGTACT 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 298
BmrI ACTGGG 1 cut(s) 403
BmuI ACTGGG 1 cut(s) 403
Bpu10I CCTNAGC 1 cut(s) 270
BsaBI GATNNNNATC 1 cut(s) 106
Bse1I ACTGG 3 cut(s) 316, 398, 428
Bse3DI GCAATG 1 cut(s) 359
Bse8I GATNNNNATC 1 cut(s) 106
BseJI GATNNNNATC 1 cut(s) 106
BseMI GCAATG 1 cut(s) 359
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 3 cut(s) 316, 398, 428
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 278
Bsh1285I CGRYCG 1 cut(s) 349
BshFI GGCC 2 cut(s) 5, 165
BshNI GGYRCC 1 cut(s) 296
BsiEI CGRYCG 1 cut(s) 349
BsiHKAI GWGCWC 2 cut(s) 47, 330
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 1 cut(s) 146
BsnI GGCC 2 cut(s) 5, 165
BsoBI CYCGRG 1 cut(s) 329
Bsp1286I GDGCHC 2 cut(s) 47, 330
Bsp143I GATC 2 cut(s) 101, 346
BspACI CCGC 1 cut(s) 182
BspANI GGCC 2 cut(s) 5, 165
BspCNI CTCAG 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 298
BspT107I GGYRCC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 359
BsrI ACTGG 3 cut(s) 316, 398, 428
BssMI GATC 2 cut(s) 101, 346
Bst4CI ACNGT 2 cut(s) 49, 142
BstC8I GCNNGC 2 cut(s) 264, 326
BstDEI CTNAG 1 cut(s) 270
BstKTI GATC 2 cut(s) 104, 349
BstMBI GATC 2 cut(s) 101, 346
BstMCI CGRYCG 1 cut(s) 349
BstMWI GCNNNNNNNGC 3 cut(s) 179, 259, 321
BstV1I GCAGC 1 cut(s) 278
BsuRI GGCC 2 cut(s) 5, 165
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 264, 326
Cfr13I GGNCC 1 cut(s) 163
Csp6I GTAC 2 cut(s) 24, 416
CviJI RGCY 8 cut(s) 5, 55, 76, 165, 253, 269, 328, 375
CviKI_1 RGCY 8 cut(s) 5, 55, 76, 165, 253, 269, 328, 375
CviQI GTAC 2 cut(s) 24, 416
DdeI CTNAG 1 cut(s) 270
DpnI GATC 2 cut(s) 103, 348
DpnII GATC 2 cut(s) 101, 346
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 328
Eco24I GRGCYC 1 cut(s) 330
Eco53kI GAGCTC 1 cut(s) 328
Eco88I CYCGRG 1 cut(s) 329
EcoICRI GAGCTC 1 cut(s) 328
EcoT38I GRGCYC 1 cut(s) 330
FaiI YATR 3 cut(s) 279, 405, 413
FalI AAGNNNNNCTT 2 cut(s) 76, 108
Fnu4HI GCNGC 1 cut(s) 267
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 2 cut(s) 12, 381
GluI GCNGC 1 cut(s) 267
HaeIII GGCC 2 cut(s) 5, 165
HapII CCGG 1 cut(s) 146
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 1 cut(s) 131
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 1 cut(s) 146
Hpy166II GTNNAC 2 cut(s) 289, 391
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 4 cut(s) 12, 247, 290, 331
Hpy8I GTNNAC 2 cut(s) 289, 391
HpyAV CCTTC 2 cut(s) 182, 287
HpyCH4III ACNGT 2 cut(s) 49, 142
HpyCH4V TGCA 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 259, 321
HpyF3I CTNAG 1 cut(s) 270
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 2 cut(s) 101, 346
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 5 cut(s) 159, 329, 344, 379, 409
Lsp1109I GCAGC 1 cut(s) 278
MaeI CTAG 2 cut(s) 12, 381
MaeIII GTNAC 1 cut(s) 224
MalI GATC 2 cut(s) 103, 348
MboI GATC 2 cut(s) 101, 346
MboII GAAGA 6 cut(s) 46, 93, 111, 161, 346, 377
MhlI GDGCHC 2 cut(s) 47, 330
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 60, 115
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 4 cut(s) 154, 265, 355, 365
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 156, 390, 433
MslI CAYNNNNRTG 1 cut(s) 294
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 1 cut(s) 146
MwoI GCNNNNNNNGC 3 cut(s) 179, 259, 321
NdeII GATC 2 cut(s) 101, 346
NlaIV GGNNCC 1 cut(s) 298
OliI CACNNNNGTG 1 cut(s) 294
PaeR7I CTCGAG 1 cut(s) 329
PkrI GCNGC 1 cut(s) 268
Ple19I CGATCG 1 cut(s) 349
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PsiI TTATAA 1 cut(s) 405
Psp124BI GAGCTC 1 cut(s) 330
PspN4I GGNNCC 1 cut(s) 298
PspPI GGNCC 1 cut(s) 163
PsrI GAACNNNNNNTAC 2 cut(s) 7, 39
PvuI CGATCG 1 cut(s) 349
PvuII CAGCTG 1 cut(s) 269
RsaI GTAC 2 cut(s) 25, 417
RsaNI GTAC 2 cut(s) 24, 416
RseI CAYNNNNRTG 1 cut(s) 294
SacI GAGCTC 1 cut(s) 330
SaqAI TTAA 3 cut(s) 156, 390, 433
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 2 cut(s) 101, 346
Sau96I GGNCC 1 cut(s) 163
ScaI AGTACT 1 cut(s) 25
SchI GAGTC 1 cut(s) 125
SduI GDGCHC 2 cut(s) 47, 330
SetI ASST 6 cut(s) 57, 78, 255, 271, 298, 330
Sfr274I CTCGAG 1 cut(s) 329
SlaI CTCGAG 1 cut(s) 329
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 2 cut(s) 60, 115
SsiI CCGC 1 cut(s) 182
SspMI CTAG 2 cut(s) 12, 381
SstI GAGCTC 1 cut(s) 330
TaaI ACNGT 2 cut(s) 49, 142
TaqI TCGA 1 cut(s) 330
TasI AATT 2 cut(s) 60, 115
TatI WGTACW 1 cut(s) 23
Tru1I TTAA 3 cut(s) 156, 390, 433
Tru9I TTAA 3 cut(s) 156, 390, 433
TscAI CASTG 1 cut(s) 52
TseI GCWGC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 210
TspGWI ACGGA 1 cut(s) 433
TspRI CASTG 1 cut(s) 52
XbaI TCTAGA 1 cut(s) 11
XhoI CTCGAG 1 cut(s) 329
XspI CTAG 2 cut(s) 12, 381
ZrmI AGTACT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.