Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004497

Physical Location & Seq

Genomic Coordinates Reverse (-)

10673913 .. 10675468

Gene Structure 1556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCCAAGAAGAAGAACGGCGGCGGCGGCGGCGGCGGTAAAACCGCCAGCAACGACGGGGGTGAGAAGAAGAAGGGCGACGGAGGTGAGAAGAAGGAGGAAACCCCCATCACTGTCATCCTGAAGATTGACATGCACTGTGAGGGCTGCGCTACCAAGATTGTCAAATGCGTCAAAGGTTTTGCAGAGGTGGAGACAGTGAAGTCAGAAAGCCAGGCGAACAAGCTGACGGTGGTCGGGAAAGTGGACCCCATCACGCTCCGGGACAAACTCGCCGCCAAGACCAATAAGAAGGTCGACCTCGTCTCCCCCCAGCCCAAAAAGGACAACAAAGACAACGGCGACGGCGGCGACGCCAAGAAAAAGCCGCCGGAGAAATCCAACGACGACAAAAAAACCAAAGAGCCTCCGGTGACGACGGCGGTTCTGAAGCTGAACCTCCACTGCCAGGGATGCATCCAGAAGATCCACAGGATCGTCACCAAGACGAAAGGGTTCACCGAGATGAGCATCGACAAGGAGAAGGATCTGCTGATGGTGAAGGGCTCGATGGACATGAACGTTCTGGCAGAGAACTTGAAGGAGAAGCTGAGGAGGTCCGTCGACATTGTCCCGCCGAAGAAAGAGAAGGAGAAGGGCGACAATAACGGCGGAGGCGGGGATAAGAAGAAAAAGGAAGGGGAGGAGGGAAAGGAGGGTGGGAAACTTGAGGGGAACAGGATGGATTTTCCTCCGGGTCCGACCGGGTACGGGCAGCAGATTCCATACATGATCCCATACGGTCCTGGATACGGAGCACCCGGATACCCGATTCCGCCTCCACCAATGTACATTGGCAACCCGCCGGAGATGTTCAGCGACGAGAACCCTAATGCCTGCTCAATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0008270 GO:0009909 GO:0009910 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0031974 GO:0031981 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0098771 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

297

Amino Acids

31.85

Weight (kDa)

9.13

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	42 - 94	8.1e-08	Heavy-metal-associated domain
HMA	PF00403	146 - 198	6.4e-06	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60800 AT5G60800
fragaria_vesca	FvH4_3g31060 FvH4_3g31060
malus_domestica	MD00G1033400.v1.1 MD00G1102700.v1.1
prunus_persica	Prupe.6G108800_v2.0.a1
pyrus_communis	pycom11g11880
rosa_chinensis	RchiOBHm_Chr5g0057721
rosa_laevigata	RLG00000035171
rosa_multiflora	Rmu_co8079862.1_g000001 Rmu_sc0001849.1_g000008 Rmu_sc0002589.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022790
rosa_rugosa	Rorug05G0309100
rosa_samantha	Rh1AG058000 Rh1BG049100 Rh1BG308100 Rh1CG323700 Rh1CG323800 Rh1DG340200 Rh3BG104100 Rh4CG207800 Rh5AG192400 Rh5AG376900 Rh5BG281200 Rh5BG388400 Rh5CG412800 Rh5DG402700 Rh7AG428400
rosa_wichuraiana	Rw2G051380 Rw5G035580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	202
AccI	GTMKAC	2 cut(s)	297, 603
AclI	AACGTT	1 cut(s)	561
AclWI	GGATC	4 cut(s)	460, 482, 534, 766
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	143, 449
AcyI	GRCGYC	1 cut(s)	354
AfaI	GTAC	2 cut(s)	749, 830
AfiI	CCNNNNNNNGG	3 cut(s)	448, 750, 791
AgsI	TTSAA	1 cut(s)	580
AjnI	CCWGG	3 cut(s)	213, 447, 784
AluBI	AGCT	3 cut(s)	226, 433, 589
AluI	AGCT	3 cut(s)	226, 433, 589
Alw21I	GWGCWC	1 cut(s)	799
Alw26I	GTCTC	2 cut(s)	188, 310
AlwI	GGATC	4 cut(s)	460, 482, 534, 766
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	147, 754
Asp700I	GAANNNNTTC	1 cut(s)	494
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	4 cut(s)	247, 597, 737, 782
AsuC2I	CCSGG	4 cut(s)	263, 735, 745, 801
AsuHPI	GGTGA	6 cut(s)	74, 98, 424, 472, 490, 550
AvaII	GGWCC	4 cut(s)	247, 597, 737, 782
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	548
Bbv12I	GWGCWC	1 cut(s)	799
BbvCI	CCTCAGC	1 cut(s)	590
BbvI	GCAGC	2 cut(s)	134, 766
BccI	CCATC	5 cut(s)	116, 260, 529, 544, 715
BceAI	ACGGC	5 cut(s)	34, 355, 361, 435, 664
BciT130I	CCWGG	3 cut(s)	215, 449, 786
BciVI	GTATCC	2 cut(s)	782, 797
BcnI	CCSGG	4 cut(s)	263, 735, 745, 801
BcoDI	GTCTC	2 cut(s)	188, 310
BfuI	GTATCC	2 cut(s)	782, 797
Bme1390I	CCNGG	7 cut(s)	215, 263, 449, 735, 745, 786, 801
Bme18I	GGWCC	4 cut(s)	247, 597, 737, 782
BmgT120I	GGNCC	4 cut(s)	247, 597, 737, 782
BmiI	GGNNCC	2 cut(s)	249, 738
BmrFI	CCNGG	7 cut(s)	215, 263, 449, 735, 745, 786, 801
BmsI	GCATC	3 cut(s)	443, 465, 519
BoxI	GACNNNNGTC	1 cut(s)	233
Bpu10I	CCTNAGC	1 cut(s)	590
BpuEI	CTTGAG	1 cut(s)	728
BpuMI	CCSGG	4 cut(s)	263, 735, 745, 801
BsaBI	GATNNNNATC	1 cut(s)	509
BsaHI	GRCGYC	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	448
BsaWI	WCCGGW	1 cut(s)	409
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	3 cut(s)	448, 750, 791
Bse8I	GATNNNNATC	1 cut(s)	509
BseBI	CCWGG	3 cut(s)	215, 449, 786
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	4 cut(s)	117, 456, 458, 726
BseJI	GATNNNNATC	1 cut(s)	509
BseLI	CCNNNNNNNGG	3 cut(s)	448, 750, 791
BseMII	CTCAG	1 cut(s)	581
BseRI	GAGGAG	2 cut(s)	607, 698
BseXI	GCAGC	2 cut(s)	134, 766
BseYI	CCCAGC	1 cut(s)	312
Bsh1285I	CGRYCG	1 cut(s)	744
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	744
BsiHKAI	GWGCWC	1 cut(s)	799
BsiSI	CCGG	7 cut(s)	262, 371, 410, 734, 744, 801, 845
BslFI	GGGAC	2 cut(s)	278, 596
BslI	CCNNNNNNNGG	3 cut(s)	448, 750, 791
BsmAI	GTCTC	2 cut(s)	188, 310
BsmBI	CGTCTC	1 cut(s)	310
BsmFI	GGGAC	2 cut(s)	278, 596
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	548, 799
Bsp1407I	TGTACA	1 cut(s)	828
Bsp143I	GATC	4 cut(s)	465, 474, 526, 771
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	582
BspLI	GGNNCC	2 cut(s)	249, 738
BspPI	GGATC	4 cut(s)	460, 482, 534, 766
BsrGI	TGTACA	1 cut(s)	828
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	4 cut(s)	465, 474, 526, 771
BssNI	GRCGYC	1 cut(s)	354
Bst2UI	CCWGG	3 cut(s)	215, 449, 786
Bst4CI	ACNGT	5 cut(s)	115, 140, 199, 232, 782
BstACI	GRCGYC	1 cut(s)	354
BstAUI	TGTACA	1 cut(s)	828
BstC8I	GCNNGC	2 cut(s)	49, 877
BstDEI	CTNAG	1 cut(s)	590
BstF5I	GGATG	4 cut(s)	117, 456, 458, 726
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	4 cut(s)	468, 477, 529, 774
BstMAI	GTCTC	2 cut(s)	188, 310
BstMBI	GATC	4 cut(s)	465, 474, 526, 771
BstMCI	CGRYCG	1 cut(s)	744
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 30, 33, 348, 453
BstNI	CCWGG	3 cut(s)	215, 449, 786
BstNSI	RCATGY	1 cut(s)	136
BstPAI	GACNNNNGTC	1 cut(s)	233
BstSCI	CCNGG	7 cut(s)	213, 261, 447, 733, 743, 784, 799
BstV1I	GCAGC	2 cut(s)	134, 766
BstX2I	RGATCY	2 cut(s)	465, 526
BstYI	RGATCY	2 cut(s)	465, 526
BsuI	GTATCC	2 cut(s)	782, 797
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	4 cut(s)	117, 456, 458, 726
BtsI	GCAGTG	1 cut(s)	442
BtsIMutI	CAGTG	4 cut(s)	111, 136, 204, 442
Cac8I	GCNNGC	2 cut(s)	49, 877
CfoI	GCGC	1 cut(s)	152
Cfr13I	GGNCC	4 cut(s)	247, 597, 737, 782
CseI	GACGC	2 cut(s)	160, 362
Csp6I	GTAC	2 cut(s)	748, 829
CviAII	CATG	3 cut(s)	133, 556, 769
CviQI	GTAC	2 cut(s)	748, 829
DdeI	CTNAG	1 cut(s)	590
DpnI	GATC	4 cut(s)	467, 476, 528, 773
DpnII	GATC	4 cut(s)	465, 474, 526, 771
DrdI	GACNNNNNNGTC	1 cut(s)	202
DseDI	GACNNNNNNGTC	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	2 cut(s)	666, 804
Eco24I	GRGCYC	1 cut(s)	548
Eco47I	GGWCC	4 cut(s)	247, 597, 737, 782
Eco57I	CTGAAG	2 cut(s)	143, 449
EcoRII	CCWGG	3 cut(s)	213, 447, 784
EcoT22I	ATGCAT	1 cut(s)	458
EcoT38I	GRGCYC	1 cut(s)	548
Esp3I	CGTCTC	1 cut(s)	310
FaeI	CATG	3 cut(s)	136, 559, 772
FaiI	YATR	6 cut(s)	134, 557, 766, 770, 778, 887
FaqI	GGGAC	2 cut(s)	278, 596
FatI	CATG	3 cut(s)	132, 555, 768
FauI	CCCGC	3 cut(s)	621, 650, 849
FblI	GTMKAC	2 cut(s)	297, 603
FokI	GGATG	4 cut(s)	104, 443, 465, 733
FriOI	GRGCYC	1 cut(s)	548
GlaI	GCGC	1 cut(s)	151
GsaI	CCCAGC	1 cut(s)	316
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	7 cut(s)	262, 371, 410, 734, 744, 801, 845
HgaI	GACGC	2 cut(s)	160, 362
HhaI	GCGC	1 cut(s)	152
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	3 cut(s)	136, 559, 772
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HincII	GTYRAC	2 cut(s)	298, 604
HindII	GTYRAC	2 cut(s)	298, 604
HinfI	GANTC	2 cut(s)	760, 811
HpaII	CCGG	7 cut(s)	262, 371, 410, 734, 744, 801, 845
HphI	GGTGA	6 cut(s)	74, 98, 424, 472, 490, 550
Hpy166II	GTNNAC	4 cut(s)	247, 298, 498, 604
Hpy188I	TCNGA	3 cut(s)	208, 429, 741
Hpy188III	TCNNGA	3 cut(s)	121, 238, 460
Hpy8I	GTNNAC	4 cut(s)	247, 298, 498, 604
Hpy99I	CGWCG	8 cut(s)	59, 83, 347, 356, 389, 421, 605, 863
HpyAV	CCTTC	9 cut(s)	67, 88, 286, 517, 535, 574, 622, 628, 671
HpyCH4III	ACNGT	5 cut(s)	115, 140, 199, 232, 782
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	3 cut(s)	136, 185, 456
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 30, 33, 348, 453
HpyF3I	CTNAG	1 cut(s)	590
HpySE526I	ACGT	1 cut(s)	561
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	3 cut(s)	136, 559, 772
HspAI	GCGC	1 cut(s)	150
Kzo9I	GATC	4 cut(s)	465, 474, 526, 771
LmnI	GCTCC	2 cut(s)	264, 794
Lsp1109I	GCAGC	2 cut(s)	134, 766
LweI	GCATC	3 cut(s)	443, 465, 519
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	2 cut(s)	412, 478
MalI	GATC	4 cut(s)	467, 476, 528, 773
MboI	GATC	4 cut(s)	465, 474, 526, 771
MboII	GAAGA	9 cut(s)	22, 25, 79, 82, 103, 136, 475, 631, 679
MflI	RGATCY	2 cut(s)	465, 526
MhlI	GDGCHC	2 cut(s)	548, 799
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	882
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	405, 764
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	458
MroXI	GAANNNNTTC	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	503
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	7 cut(s)	262, 371, 410, 734, 744, 801, 845
MspR9I	CCNGG	7 cut(s)	215, 263, 449, 735, 745, 786, 801
MvaI	CCWGG	3 cut(s)	215, 449, 786
MwoI	GCNNNNNNNGC	5 cut(s)	27, 30, 33, 348, 453
NciI	CCSGG	4 cut(s)	263, 735, 745, 801
NdeII	GATC	4 cut(s)	465, 474, 526, 771
NlaIII	CATG	3 cut(s)	136, 559, 772
NlaIV	GGNNCC	2 cut(s)	249, 738
NmuCI	GTSAC	2 cut(s)	412, 478
NsiI	ATGCAT	1 cut(s)	458
NspI	RCATGY	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	2 cut(s)	760, 811
PflFI	GACNNNGTC	2 cut(s)	302, 608
PfoI	TCCNGGA	2 cut(s)	261, 784
PshAI	GACNNNNGTC	1 cut(s)	233
Psp1406I	AACGTT	1 cut(s)	561
Psp6I	CCWGG	3 cut(s)	213, 447, 784
PspFI	CCCAGC	1 cut(s)	312
PspGI	CCWGG	3 cut(s)	213, 447, 784
PspN4I	GGNNCC	2 cut(s)	249, 738
PspPI	GGNCC	4 cut(s)	247, 597, 737, 782
PsuI	RGATCY	2 cut(s)	465, 526
PsyI	GACNNNGTC	2 cut(s)	302, 608
RsaI	GTAC	2 cut(s)	749, 830
RsaNI	GTAC	2 cut(s)	748, 829
RseI	CAYNNNNRTG	1 cut(s)	503
SalI	GTCGAC	2 cut(s)	296, 602
Sau3AI	GATC	4 cut(s)	465, 474, 526, 771
Sau96I	GGNCC	4 cut(s)	247, 597, 737, 782
ScrFI	CCNGG	7 cut(s)	215, 263, 449, 735, 745, 786, 801
SduI	GDGCHC	2 cut(s)	548, 799
SfaNI	GCATC	3 cut(s)	443, 465, 519
SinI	GGWCC	4 cut(s)	247, 597, 737, 782
SmiMI	CAYNNNNRTG	1 cut(s)	503
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
Sse9I	AATT	1 cut(s)	882
StyD4I	CCNGG	7 cut(s)	213, 261, 447, 733, 743, 784, 799
TaaI	ACNGT	5 cut(s)	115, 140, 199, 232, 782
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	4 cut(s)	297, 513, 548, 603
TasI	AATT	1 cut(s)	882
TatI	WGTACW	1 cut(s)	828
TauI	GCSGC	8 cut(s)	24, 27, 30, 33, 36, 278, 351, 370
TfiI	GAWTC	2 cut(s)	760, 811
TscAI	CASTG	4 cut(s)	118, 143, 204, 449
TseFI	GTSAC	2 cut(s)	412, 478
TseI	GCWGC	2 cut(s)	147, 754
Tsp45I	GTSAC	2 cut(s)	412, 478
TspDTI	ATGAA	1 cut(s)	572
TspGWI	ACGGA	3 cut(s)	96, 589, 807
TspRI	CASTG	4 cut(s)	118, 143, 204, 449
Tth111I	GACNNNGTC	2 cut(s)	302, 608
VpaK11BI	GGWCC	4 cut(s)	247, 597, 737, 782
XceI	RCATGY	1 cut(s)	136
XmiI	GTMKAC	2 cut(s)	297, 603
XmnI	GAANNNNTTC	1 cut(s)	494
Zsp2I	ATGCAT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.