pycom11g13660

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003912
Physical Location & Seq
Forward (+)
13232593 .. 13233015
423 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 423 bp
ATGTTCAGACATGCGCCCCAGAAGCAGTTCACCAGTTCAATTGTGAAGCTATCTTCTCCCCTTGGATCTGTGAAGAATATCTCCAAGTCCTTTGGCTTGAAAGCATCCTCAAACTTCCGGGCATCAATGGAGGTATACAAGGTGAAGCTGATTGGGCCAGATGGGGTGGAGAATGAGTTTGAGGCGGAGGATGATTGCTACATCTTAGATGCAGCTGAGAATGCTGGAGTTGAGCTGCCATATTCCTGCAGGGCTGGGGCATGCTCTACCTGTGCAGGGAAGCTGGCATCGGGTTCAGTAGATCAGTCCGATGGTTCATTCCTCGACGACAACCAAATGAAGGAGGGTTATGTGCTGACTTGTGTATCGTACCCGACTTCGGACCTTGTGATTCACACTCACAAGGAGAGTGAGCTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

141

Amino Acids

15.16

Weight (kDa)

4.98

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 53 - 126 4.2e-23 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 135
AciI CCGC 1 cut(s) 185
AclWI GGATC 1 cut(s) 73
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 3 cut(s) 276, 340, 379
AgsI TTSAA 2 cut(s) 39, 100
AluBI AGCT 6 cut(s) 49, 148, 215, 235, 283, 415
AluI AGCT 6 cut(s) 49, 148, 215, 235, 283, 415
AlwI GGATC 1 cut(s) 73
AoxI GGCC 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 212, 235
Asp700I GAANNNNTTC 1 cut(s) 26
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 2 cut(s) 155, 382
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 22, 154
AvaII GGWCC 1 cut(s) 382
BaeI ACNNNNGTAYC 2 cut(s) 348, 381
BbvI GCAGC 2 cut(s) 222, 224
BccI CCATC 2 cut(s) 155, 305
BcnI CCSGG 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 247
BisI GCNGC 2 cut(s) 213, 236
BlsI GCNGC 2 cut(s) 214, 237
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 1 cut(s) 382
BmgT120I GGNCC 2 cut(s) 155, 382
BmrFI CCNGG 1 cut(s) 119
BmsI GCATC 4 cut(s) 113, 131, 199, 296
BpmI CTGGAG 1 cut(s) 246
BpuMI CCSGG 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 61
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 3 cut(s) 276, 340, 379
Bse1I ACTGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 61
BseGI GGATG 2 cut(s) 104, 196
BseLI CCNNNNNNNGG 3 cut(s) 276, 340, 379
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 33
BseXI GCAGC 2 cut(s) 222, 224
BseYI CCCAGC 1 cut(s) 254
BsgI GTGCAG 1 cut(s) 294
BshFI GGCC 1 cut(s) 157
BsiSI CCGG 1 cut(s) 118
BslI CCNNNNNNNGG 3 cut(s) 276, 340, 379
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 1 cut(s) 157
Bsp143I GATC 2 cut(s) 65, 301
BspACI CCGC 1 cut(s) 185
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 1 cut(s) 208
BspMAI CTGCAG 1 cut(s) 251
BspPI GGATC 1 cut(s) 73
BsrI ACTGG 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 2 cut(s) 65, 301
BssNAI GTATAC 1 cut(s) 136
BssT1I CCWWGG 1 cut(s) 61
Bst1107I GTATAC 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 262, 285
BstDEI CTNAG 2 cut(s) 205, 216
BstF5I GGATG 2 cut(s) 104, 196
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 2 cut(s) 68, 304
BstMBI GATC 2 cut(s) 65, 301
BstMWI GCNNNNNNNGC 3 cut(s) 22, 154, 221
BstNSI RCATGY 2 cut(s) 14, 264
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 247
BstV1I GCAGC 2 cut(s) 222, 224
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BstZ17I GTATAC 1 cut(s) 136
BsuRI GGCC 1 cut(s) 157
BtsCI GGATG 2 cut(s) 104, 196
Cac8I GCNNGC 2 cut(s) 262, 285
CfoI GCGC 1 cut(s) 16
Cfr13I GGNCC 2 cut(s) 155, 382
Csp6I GTAC 1 cut(s) 370
CviAII CATG 2 cut(s) 11, 261
CviJI RGCY 9 cut(s) 49, 96, 148, 157, 215, 235, 254, 283, 415
CviKI_1 RGCY 9 cut(s) 49, 96, 148, 157, 215, 235, 254, 283, 415
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 2 cut(s) 205, 216
DpnI GATC 2 cut(s) 67, 303
DpnII GATC 2 cut(s) 65, 301
EciI GGCGGA 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 2 cut(s) 14, 264
FaiI YATR 5 cut(s) 12, 136, 241, 262, 351
FatI CATG 2 cut(s) 10, 260
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 213, 236
FokI GGATG 2 cut(s) 91, 203
Fsp4HI GCNGC 2 cut(s) 213, 236
GlaI GCGC 1 cut(s) 15
GluI GCNGC 2 cut(s) 213, 236
GsaI CCCAGC 1 cut(s) 258
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 1 cut(s) 157
HapII CCGG 1 cut(s) 118
HhaI GCGC 1 cut(s) 16
Hin1II CATG 2 cut(s) 14, 264
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HinfI GANTC 1 cut(s) 391
HpaII CCGG 1 cut(s) 118
HphI GGTGA 2 cut(s) 22, 154
Hpy166II GTNNAC 2 cut(s) 30, 136
Hpy188I TCNGA 3 cut(s) 8, 310, 382
Hpy8I GTNNAC 2 cut(s) 30, 136
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 1 cut(s) 334
HpyCH4V TGCA 3 cut(s) 212, 249, 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 154, 221
HpyF3I CTNAG 2 cut(s) 205, 216
Hsp92II CATG 2 cut(s) 14, 264
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 2 cut(s) 65, 301
Lsp1109I GCAGC 2 cut(s) 222, 224
LweI GCATC 4 cut(s) 113, 131, 199, 296
MalI GATC 2 cut(s) 67, 303
MboI GATC 2 cut(s) 65, 301
MboII GAAGA 2 cut(s) 45, 85
MfeI CAATTG 1 cut(s) 39
MflI RGATCY 1 cut(s) 65
MluCI AATT 1 cut(s) 39
MnlI CCTC 6 cut(s) 118, 124, 175, 181, 332, 337
MroXI GAANNNNTTC 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 1 cut(s) 118
MspR9I CCNGG 1 cut(s) 119
MunI CAATTG 1 cut(s) 39
Mva1269I GAATGC 1 cut(s) 226
MwoI GCNNNNNNNGC 3 cut(s) 22, 154, 221
NciI CCSGG 1 cut(s) 119
NdeII GATC 2 cut(s) 65, 301
NlaIII CATG 2 cut(s) 14, 264
NspI RCATGY 2 cut(s) 14, 264
PaeI GCATGC 1 cut(s) 264
PctI GAATGC 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 1 cut(s) 391
PkrI GCNGC 2 cut(s) 214, 237
PspFI CCCAGC 1 cut(s) 254
PspPI GGNCC 2 cut(s) 155, 382
PstI CTGCAG 1 cut(s) 251
PsuI RGATCY 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
SatI GCNGC 2 cut(s) 213, 236
Sau3AI GATC 2 cut(s) 65, 301
Sau96I GGNCC 2 cut(s) 155, 382
SbfI CCTGCAGG 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 119
SdaI CCTGCAGG 1 cut(s) 251
SfaNI GCATC 4 cut(s) 113, 131, 199, 296
SfcI CTRYAG 1 cut(s) 247
SinI GGWCC 1 cut(s) 382
SphI GCATGC 1 cut(s) 264
Sse8387I CCTGCAGG 1 cut(s) 251
Sse9I AATT 1 cut(s) 39
SsiI CCGC 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 61
TaqI TCGA 1 cut(s) 324
TasI AATT 1 cut(s) 39
TfiI GAWTC 1 cut(s) 391
TseI GCWGC 2 cut(s) 212, 235
TspDTI ATGAA 2 cut(s) 306, 353
VpaK11BI GGWCC 1 cut(s) 382
XceI RCATGY 2 cut(s) 14, 264
XmiI GTMKAC 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.