Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008163

Physical Location & Seq

Genomic Coordinates Reverse (-)

15977527 .. 15978608

Gene Structure 1082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGTGATAACTTACAGTGTGGGATTCAAGTCTGATGGGAAGATTACAGCTTTAGAACTTGAGATATTGATAAATGCAGGGATTTCCATAGGCTTTAGTCCAGTATTGCCGAGAACTATTCTGTGGGCACTTAAGAAGTATGACTGGGGTGCTCTGGCTTTCGATATCAAGGTGTGCAAAACAAACACTCCGAGTAGGTCTGCTATGCGGGCCCCTGGGGAGGTGCAGGGGTCATTTATCGCTGAAGCTGTAATTGAACATGTTGCATCCACCCTTTCTATAGAAGTATATAATGTGAGAAGTGTTAATCTTCACACATCTCACAGCCTTGATTTGTTTTACGAGCACAGCGCTGGTGAACCTCTGGAGTATACTTTACCATTGATATGGAACAAGTTGGCCATGTCTTCAAGCGTTAACCCAAGGACTGAGATGGTAAAAGAATTTAATAGGTGTAATAAATGGAAGAAAAGAGGAATTTCTCGAGTACCGATATTGTGTGAAGTGTCATTGAGGCCAACTCCGGGAAAAGTAAGCATTTTAAGTGATGGGTCTGTTGTTGTTGAAGTTGGAGGAATTGAACTGGGTCAGGGGCTCTGGACGAAGGTAAAACAGGTGACAGCTTTTGCTCTTGGTTCGATTCAATGTGATGGTAGTGGAGATCTTTTGGATAAAGTACGGGTGGTGCAATCGGATACATTGAGCTTAATTCAAGGGGGAATTACTGTCGGGAGCACTACATCCGAGGCAAGCTGTGAGGCAGTTAGACTTTGCTGTAATATTTTGGTTGAGAGGTTAGCTACTCTCAAAGGGAGATTGAAGGAGCAAATGGGCTCTAGTAACTGGGAGACTCTTATTCAGCAGGTATTCTATTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004029 GO:0004031 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009687 GO:0009688 GO:0009850 GO:0009851 GO:0009987 GO:0010293 GO:0010817 GO:0016053 GO:0016106 GO:0016114 GO:0016143 GO:0016491 GO:0016620 GO:0016623 GO:0016903 GO:0018479 GO:0018488 GO:0019748 GO:0019752 GO:0019757 GO:0019760 GO:0019899 GO:0031625 GO:0032787 GO:0036094 GO:0042445 GO:0042446 GO:0043167 GO:0043168 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0048037 GO:0050302 GO:0050660 GO:0050662 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901564 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00380 ko00906 ko01100 ko01110 map00380 map00906 map01100 map01110

Pfam Domains

Protein Families

Ald_Xan_dh_C Ald_Xan_dh_C2 CO_deh_flav_C FAD_binding_5 Fer2 Fer2_2

Protein Analysis

294

Amino Acids

32.02

Weight (kDa)

7.57

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MoCoBD_1	PF02738	1 - 104	4.8e-27	Molybdopterin cofactor-binding domain
MoCoBD_2	PF20256	134 - 273	7.8e-29	Molybdopterin cofactor-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008163)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g15310 pycom11g15370
rosa_laevigata	RLG00000006965
rosa_multiflora	Rmu_co8253563.1_g000001 Rmu_sc0003371.1_g000003 Rmu_sc0013146.1_g000005 Rmu_sc0013284.1_g000001 Rmu_sc0021708.1_g000005
rosa_roxburghii	Rroxscaffold_1G00027810 Rroxscaffold_1G00042300 Rroxscaffold_1G00042310 Rroxscaffold_3G00237790 Rroxscaffold_3G00237800 Rroxscaffold_4G00285110 Rroxscaffold_5G00345700 Rroxscaffold_5G00345710 Rroxscaffold_5G00352780 Rroxscaffold_7G00192560 Rroxscaffold_7G00204520
rosa_rugosa	Rorug05G0196200
rosa_samantha	Rh6BG433000 Rh6CG482800 Rh7AG241200 Rh7DG247200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	853
AccI	GTMKAC	1 cut(s)	371
AciI	CCGC	1 cut(s)	208
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	2 cut(s)	443, 477
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	2 cut(s)	489, 678
AfeI	AGCGCT	1 cut(s)	352
AfiI	CCNNNNNNNGG	2 cut(s)	220, 524
AflII	CTTAAG	1 cut(s)	131
AflIII	ACRYGT	1 cut(s)	259
AgsI	TTSAA	8 cut(s)	28, 257, 411, 566, 581, 644, 713, 820
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	6 cut(s)	50, 248, 623, 705, 753, 800
AluI	AGCT	6 cut(s)	50, 248, 623, 705, 753, 800
Alw21I	GWGCWC	3 cut(s)	154, 348, 737
Alw26I	GTCTC	1 cut(s)	842
Ama87I	CYCGRG	1 cut(s)	483
Aor51HI	AGCGCT	1 cut(s)	352
AoxI	GGCC	3 cut(s)	210, 399, 515
ApaI	GGGCCC	1 cut(s)	214
ApoI	RAATTY	2 cut(s)	443, 477
AspLEI	GCGC	1 cut(s)	353
AspS9I	GGNCC	2 cut(s)	210, 211
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	3 cut(s)	16, 368, 628
AvaI	CYCGRG	1 cut(s)	483
BaeGI	GKGCMC	2 cut(s)	130, 214
BalI	TGGCCA	1 cut(s)	401
BanII	GRGCYC	3 cut(s)	214, 597, 836
BbsI	GAAGAC	1 cut(s)	399
Bbv12I	GWGCWC	3 cut(s)	154, 348, 737
BccI	CCATC	4 cut(s)	29, 427, 542, 644
BciT130I	CCWGG	1 cut(s)	216
BciVI	GTATCC	1 cut(s)	688
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	842
BfaI	CTAG	1 cut(s)	837
BfmI	CTRYAG	1 cut(s)	279
BfoI	RGCGCY	1 cut(s)	354
BfrI	CTTAAG	1 cut(s)	131
BfuAI	ACCTGC	1 cut(s)	853
BfuI	GTATCC	1 cut(s)	688
BglII	AGATCT	1 cut(s)	661
Bme1390I	CCNGG	2 cut(s)	216, 525
BmeT110I	CYCGRG	1 cut(s)	483
BmgT120I	GGNCC	2 cut(s)	210, 211
BmiI	GGNNCC	2 cut(s)	212, 213
BmrFI	CCNGG	2 cut(s)	216, 525
BmrI	ACTGGG	3 cut(s)	154, 593, 853
BmsI	GCATC	1 cut(s)	275
BmuI	ACTGGG	3 cut(s)	154, 593, 853
BpiI	GAAGAC	1 cut(s)	399
BplI	GAGNNNNNCTC	2 cut(s)	505, 537
BpmI	CTGGAG	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	525
BsaJI	CCNNGG	4 cut(s)	214, 215, 422, 744
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 524
Bse1I	ACTGG	4 cut(s)	101, 149, 588, 848
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	4 cut(s)	214, 215, 422, 744
BseGI	GGATG	2 cut(s)	266, 740
BseLI	CCNNNNNNNGG	2 cut(s)	220, 524
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	4 cut(s)	101, 149, 588, 848
BseSI	GKGCMC	2 cut(s)	130, 214
BsgI	GTGCAG	1 cut(s)	245
BshFI	GGCC	3 cut(s)	212, 401, 517
BsiHKAI	GWGCWC	3 cut(s)	154, 348, 737
BsiHKCI	CYCGRG	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	524
BslI	CCNNNNNNNGG	2 cut(s)	220, 524
BsmAI	GTCTC	1 cut(s)	842
BsnI	GGCC	3 cut(s)	212, 401, 517
BsoBI	CYCGRG	1 cut(s)	483
Bsp120I	GGGCCC	1 cut(s)	210
Bsp1286I	GDGCHC	7 cut(s)	130, 154, 214, 348, 597, 737, 836
Bsp143I	GATC	1 cut(s)	661
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	3 cut(s)	212, 401, 517
BspCNI	CTCAG	1 cut(s)	421
BspLI	GGNNCC	2 cut(s)	212, 213
BspMI	ACCTGC	1 cut(s)	853
BspTI	CTTAAG	1 cut(s)	131
BsrI	ACTGG	4 cut(s)	101, 149, 588, 848
BssECI	CCNNGG	4 cut(s)	214, 215, 422, 744
BssMI	GATC	1 cut(s)	661
BssNAI	GTATAC	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	422
Bst1107I	GTATAC	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	17, 727
BstAFI	CTTAAG	1 cut(s)	131
BstC8I	GCNNGC	2 cut(s)	210, 751
BstDEI	CTNAG	1 cut(s)	429
BstF5I	GGATG	2 cut(s)	266, 740
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	1 cut(s)	664
BstMAI	GTCTC	1 cut(s)	842
BstMBI	GATC	1 cut(s)	661
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	1 cut(s)	216
BstNSI	RCATGY	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	214, 523
BstSFI	CTRYAG	1 cut(s)	279
BstSLI	GKGCMC	2 cut(s)	130, 214
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	661
BstXI	CCANNNNNNTGG	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	661
BstZ17I	GTATAC	1 cut(s)	372
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	3 cut(s)	212, 401, 517
BtsCI	GGATG	2 cut(s)	266, 740
BtsIMutI	CAGTG	1 cut(s)	22
BveI	ACCTGC	1 cut(s)	853
Cac8I	GCNNGC	2 cut(s)	210, 751
CfoI	GCGC	1 cut(s)	353
Cfr13I	GGNCC	2 cut(s)	210, 211
Csp6I	GTAC	2 cut(s)	488, 677
CviAII	CATG	2 cut(s)	260, 403
CviQI	GTAC	2 cut(s)	488, 677
DdeI	CTNAG	1 cut(s)	429
DpnI	GATC	1 cut(s)	663
DpnII	GATC	1 cut(s)	661
EaeI	YGGCCR	1 cut(s)	399
Eco130I	CCWWGG	1 cut(s)	422
Eco24I	GRGCYC	3 cut(s)	214, 597, 836
Eco32I	GATATC	1 cut(s)	166
Eco47III	AGCGCT	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	214
EcoRV	GATATC	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	422
EcoT38I	GRGCYC	3 cut(s)	214, 597, 836
ErhI	CCWWGG	1 cut(s)	422
FaeI	CATG	2 cut(s)	263, 406
FatI	CATG	2 cut(s)	259, 402
FauI	CCCGC	1 cut(s)	201
FblI	GTMKAC	1 cut(s)	371
FokI	GGATG	2 cut(s)	253, 727
FriOI	GRGCYC	3 cut(s)	214, 597, 836
FspBI	CTAG	1 cut(s)	837
GlaI	GCGC	1 cut(s)	352
GsuI	CTGGAG	1 cut(s)	386
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	3 cut(s)	212, 401, 517
HapII	CCGG	1 cut(s)	524
HhaI	GCGC	1 cut(s)	353
Hin1II	CATG	2 cut(s)	263, 406
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	3 cut(s)	24, 640, 850
HpaI	GTTAAC	1 cut(s)	418
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	3 cut(s)	16, 368, 628
Hpy166II	GTNNAC	3 cut(s)	359, 372, 418
Hpy188I	TCNGA	4 cut(s)	34, 192, 694, 745
Hpy188III	TCNNGA	4 cut(s)	365, 483, 598, 730
Hpy8I	GTNNAC	3 cut(s)	359, 372, 418
HpyAV	CCTTC	2 cut(s)	598, 814
HpyCH4III	ACNGT	2 cut(s)	17, 727
HpyCH4V	TGCA	5 cut(s)	77, 177, 226, 266, 688
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	1 cut(s)	429
Hsp92II	CATG	2 cut(s)	263, 406
HspAI	GCGC	1 cut(s)	351
KspAI	GTTAAC	1 cut(s)	418
Kzo9I	GATC	1 cut(s)	661
LmnI	GCTCC	2 cut(s)	732, 823
LweI	GCATC	1 cut(s)	275
MaeI	CTAG	1 cut(s)	837
MaeIII	GTNAC	2 cut(s)	616, 839
MalI	GATC	1 cut(s)	663
MboI	GATC	1 cut(s)	661
MboII	GAAGA	4 cut(s)	52, 302, 399, 478
MflI	RGATCY	1 cut(s)	661
MhlI	GDGCHC	7 cut(s)	130, 154, 214, 348, 597, 737, 836
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	6 cut(s)	252, 443, 477, 576, 708, 720
MluNI	TGGCCA	1 cut(s)	401
MlyI	GAGTC	1 cut(s)	844
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	8 cut(s)	214, 372, 467, 507, 566, 739, 751, 786
Mox20I	TGGCCA	1 cut(s)	401
MscI	TGGCCA	1 cut(s)	401
MseI	TTAA	6 cut(s)	132, 306, 417, 447, 542, 707
MslI	CAYNNNNRTG	1 cut(s)	385
Msp20I	TGGCCA	1 cut(s)	401
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	1 cut(s)	524
MspR9I	CCNGG	2 cut(s)	216, 525
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	209
NciI	CCSGG	1 cut(s)	525
NdeII	GATC	1 cut(s)	661
NlaIII	CATG	2 cut(s)	263, 406
NlaIV	GGNNCC	2 cut(s)	212, 213
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	616
NspI	RCATGY	1 cut(s)	263
PaeR7I	CTCGAG	1 cut(s)	483
PasI	CCCWGGG	1 cut(s)	215
PciI	ACATGT	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	24, 640
PfoI	TCCNGGA	1 cut(s)	523
PleI	GAGTC	1 cut(s)	844
PpsI	GAGTC	1 cut(s)	844
PscI	ACATGT	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	212, 213
PspOMI	GGGCCC	1 cut(s)	210
PspPI	GGNCC	2 cut(s)	210, 211
PsuI	RGATCY	1 cut(s)	661
RsaI	GTAC	2 cut(s)	489, 678
RsaNI	GTAC	2 cut(s)	488, 677
RseI	CAYNNNNRTG	1 cut(s)	385
SaqAI	TTAA	6 cut(s)	132, 306, 417, 447, 542, 707
Sau3AI	GATC	1 cut(s)	661
Sau96I	GGNCC	2 cut(s)	210, 211
SchI	GAGTC	1 cut(s)	844
ScrFI	CCNGG	2 cut(s)	216, 525
SduI	GDGCHC	7 cut(s)	130, 154, 214, 348, 597, 737, 836
SfaNI	GCATC	1 cut(s)	275
SfcI	CTRYAG	1 cut(s)	279
Sfr274I	CTCGAG	1 cut(s)	483
SlaI	CTCGAG	1 cut(s)	483
SmiMI	CAYNNNNRTG	1 cut(s)	385
SmlI	CTYRAG	3 cut(s)	59, 131, 483
SmoI	CTYRAG	3 cut(s)	59, 131, 483
Sse9I	AATT	6 cut(s)	252, 443, 477, 576, 708, 720
SsiI	CCGC	1 cut(s)	208
SspI	AATATT	1 cut(s)	781
SspMI	CTAG	1 cut(s)	837
StyD4I	CCNGG	2 cut(s)	214, 523
StyI	CCWWGG	1 cut(s)	422
TaaI	ACNGT	2 cut(s)	17, 727
TaqI	TCGA	3 cut(s)	162, 484, 638
TasI	AATT	6 cut(s)	252, 443, 477, 576, 708, 720
TfiI	GAWTC	2 cut(s)	24, 640
Tru1I	TTAA	6 cut(s)	132, 306, 417, 447, 542, 707
Tru9I	TTAA	6 cut(s)	132, 306, 417, 447, 542, 707
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	616
Tsp45I	GTSAC	1 cut(s)	616
TspRI	CASTG	1 cut(s)	22
Vha464I	CTTAAG	1 cut(s)	131
XapI	RAATTY	2 cut(s)	443, 477
XceI	RCATGY	1 cut(s)	263
XhoI	CTCGAG	1 cut(s)	483
XmiI	GTMKAC	1 cut(s)	371
XspI	CTAG	1 cut(s)	837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.