Rroxscaffold_1G00042300

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008163
Physical Location & Seq
Reverse (-)
60391525 .. 60392640
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042300.1

Sequence Viewer

Length: 549 bp
ATGATTAACAACAATCTGTGCTGCTATGATCTTGCAATGGAACTAAGTAATAGCACTTTGGAAGAATCATACAGAGAAAGAACTGCAAACACAGAATTCAAACAGAAGGAGAAGCCATCTTTTGCTAGAAAGCGTGGAAATTTGGATGCACCTAATACAGATACAAAAAGGAGAATATTGGACTTAATGGAAAAGGCTGCATCTTCAATAATCTTGAAAGATATATTAAGGAAGTACCCAGTTCCATCTCATGCTTACTCCATGAAAAATGTTGTGGACACGAAAATGTCATTGGGAAAGGTGGAAGTCTCGATTGAGGCCGCTAGAACAGCATTGAGAAAACTAGATGAAGGGTGCAGTACCAAAGATGCAGAAGCCGTTTGTGGGCCTGAGGTTCTTAAACAGATATTTAGATGGAAGTTGATAGTGGGTGATTGGTGTCCAAAGCCATTGTTGGAGTTGGATTGCAGCTTGGATGGAGTTGGTTCCCGTGTTGGAGAAGAAGAGATGGTAAGTTTTAGTCTCTGCCATCTAGCAGTTTTGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

182

Amino Acids

20.43

Weight (kDa)

6.74

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 321
AcsI RAATTY 2 cut(s) 95, 139
AfaI GTAC 2 cut(s) 236, 361
AfiI CCNNNNNNNGG 1 cut(s) 384
AgsI TTSAA 3 cut(s) 100, 207, 217
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 1 cut(s) 471
AluI AGCT 1 cut(s) 471
Alw26I GTCTC 2 cut(s) 313, 527
AoxI GGCC 2 cut(s) 318, 386
ApeKI GCWGC 3 cut(s) 21, 197, 468
ApoI RAATTY 2 cut(s) 95, 139
AspS9I GGNCC 1 cut(s) 386
AsuHPI GGTGA 1 cut(s) 443
AxyI CCTNAGG 1 cut(s) 390
BbvI GCAGC 3 cut(s) 8, 184, 480
BccI CCATC 6 cut(s) 124, 253, 408, 470, 502, 537
BceAI ACGGC 1 cut(s) 362
BcoDI GTCTC 2 cut(s) 313, 527
BfaI CTAG 4 cut(s) 126, 324, 344, 533
BisI GCNGC 4 cut(s) 22, 198, 321, 469
BlsI GCNGC 4 cut(s) 23, 199, 322, 470
BmgT120I GGNCC 1 cut(s) 386
BmiI GGNNCC 1 cut(s) 487
BmrI ACTGGG 1 cut(s) 233
BmsI GCATC 3 cut(s) 136, 209, 358
BmuI ACTGGG 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 384
Bse1I ACTGG 1 cut(s) 239
Bse21I CCTNAGG 1 cut(s) 390
Bse3DI GCAATG 1 cut(s) 42
BseGI GGATG 2 cut(s) 151, 481
BseLI CCNNNNNNNGG 1 cut(s) 384
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 381
BseNI ACTGG 1 cut(s) 239
BseXI GCAGC 3 cut(s) 8, 184, 480
BsgI GTGCAG 1 cut(s) 376
BshFI GGCC 2 cut(s) 320, 388
BslI CCNNNNNNNGG 1 cut(s) 384
BsmAI GTCTC 2 cut(s) 313, 527
BsnI GGCC 2 cut(s) 320, 388
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 1 cut(s) 321
BspANI GGCC 2 cut(s) 320, 388
BspCNI CTCAG 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 487
BsrDI GCAATG 1 cut(s) 42
BsrI ACTGG 1 cut(s) 239
BssMI GATC 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 498
BstDEI CTNAG 2 cut(s) 44, 390
BstF5I GGATG 2 cut(s) 151, 481
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 2 cut(s) 313, 527
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstV1I GCAGC 3 cut(s) 8, 184, 480
Bsu36I CCTNAGG 1 cut(s) 390
BsuRI GGCC 2 cut(s) 320, 388
BtsCI GGATG 2 cut(s) 151, 481
Cfr13I GGNCC 1 cut(s) 386
Csp6I GTAC 2 cut(s) 235, 360
CviAII CATG 2 cut(s) 251, 262
CviJI RGCY 7 cut(s) 115, 197, 320, 377, 388, 448, 471
CviKI_1 RGCY 7 cut(s) 115, 197, 320, 377, 388, 448, 471
CviQI GTAC 2 cut(s) 235, 360
DdeI CTNAG 2 cut(s) 44, 390
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
Eco81I CCTNAGG 1 cut(s) 390
EcoRI GAATTC 1 cut(s) 95
FaeI CATG 2 cut(s) 254, 265
FaiI YATR 5 cut(s) 27, 70, 224, 252, 263
FatI CATG 2 cut(s) 250, 261
Fnu4HI GCNGC 4 cut(s) 22, 198, 321, 469
FokI GGATG 2 cut(s) 158, 488
Fsp4HI GCNGC 4 cut(s) 22, 198, 321, 469
FspBI CTAG 4 cut(s) 126, 324, 344, 533
GluI GCNGC 4 cut(s) 22, 198, 321, 469
HaeIII GGCC 2 cut(s) 320, 388
Hin1II CATG 2 cut(s) 254, 265
HinfI GANTC 1 cut(s) 65
HphI GGTGA 1 cut(s) 443
Hpy166II GTNNAC 1 cut(s) 277
Hpy188III TCNNGA 2 cut(s) 214, 310
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 2 cut(s) 100, 344
HpyCH4V TGCA 7 cut(s) 35, 86, 149, 200, 357, 371, 468
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 2 cut(s) 44, 390
Hsp92II CATG 2 cut(s) 254, 265
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 2 cut(s) 252, 402
Lsp1109I GCAGC 3 cut(s) 8, 184, 480
LweI GCATC 3 cut(s) 136, 209, 358
MaeI CTAG 4 cut(s) 126, 324, 344, 533
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 4 cut(s) 74, 195, 512, 515
MluCI AATT 2 cut(s) 95, 139
MmeI TCCRAC 3 cut(s) 435, 441, 475
MnlI CCTC 2 cut(s) 310, 385
MseI TTAA 4 cut(s) 6, 185, 227, 399
MslI CAYNNNNRTG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 329
NdeII GATC 1 cut(s) 28
NlaIII CATG 2 cut(s) 254, 265
NlaIV GGNNCC 1 cut(s) 487
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 4 cut(s) 23, 199, 322, 470
PspN4I GGNNCC 1 cut(s) 487
PspPI GGNCC 1 cut(s) 386
RsaI GTAC 2 cut(s) 236, 361
RsaNI GTAC 2 cut(s) 235, 360
RseI CAYNNNNRTG 1 cut(s) 284
SaqAI TTAA 4 cut(s) 6, 185, 227, 399
SatI GCNGC 4 cut(s) 22, 198, 321, 469
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 1 cut(s) 386
SetI ASST 4 cut(s) 154, 303, 396, 473
SfaNI GCATC 3 cut(s) 136, 209, 358
SmiMI CAYNNNNRTG 1 cut(s) 284
Sse9I AATT 2 cut(s) 95, 139
SsiI CCGC 1 cut(s) 321
SspI AATATT 1 cut(s) 177
SspMI CTAG 4 cut(s) 126, 324, 344, 533
TaqI TCGA 1 cut(s) 311
TasI AATT 2 cut(s) 95, 139
TauI GCSGC 1 cut(s) 323
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 4 cut(s) 6, 185, 227, 399
Tru9I TTAA 4 cut(s) 6, 185, 227, 399
TseI GCWGC 3 cut(s) 21, 197, 468
TspDTI ATGAA 2 cut(s) 278, 363
XapI RAATTY 2 cut(s) 95, 139
XspI CTAG 4 cut(s) 126, 324, 344, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.