Rh7DG247200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0008163
Physical Location & Seq
Forward (+)
25465449 .. 25468070
2622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG247200.1

Sequence Viewer

Length: 435 bp
ATGGAATCCGATTCTACTCATTCTACTAATTCTAGTCATTTGACTCATTCTCCGGTTGCCGGCAATGAGATTGTGGCTGCTGAAGCAGCTGAACAACCTGGAGCTGATGAACACACTGGTGAAGCACCATCTCCCAGTCCGACGACGACGGCGACAGCGACAACTCGTTCTTCGAAACATAAAGGGAAGAAGAAGTTTGTGAGCATGAGCGCACAAAAGAAGAAACAGGGCAGCAGCAGCGTATCTGTCGCACCAAGACCAAAAGAACAAGCAGATGAAGATAGAAAAGCAAAGGAGCAAGCAGCTGCTTTGGCTGAACAGATTGCTGCCACTCTACAAAGCAAGAATGCTACAAAGGTTTCCAAAGTTTCAAAGGCTAGTGATGCTTCAAAAAGTTCAAAGACTGGAAACACTAACAAAAAGAAACGACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.0

Weight (kDa)

9.82

Isoelectric Point (pI)

53.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 102
AfiI CCNNNNNNNGG 1 cut(s) 59
AgsI TTSAA 3 cut(s) 372, 390, 399
AjnI CCWGG 1 cut(s) 97
AleI CACNNNNGTG 1 cut(s) 117
AluBI AGCT 3 cut(s) 89, 104, 305
AluI AGCT 3 cut(s) 89, 104, 305
ApeKI GCWGC 8 cut(s) 77, 86, 231, 234, 237, 302, 305, 326
AspLEI GCGC 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 131
AsuII TTCGAA 1 cut(s) 173
BbvI GCAGC 8 cut(s) 64, 98, 243, 246, 249, 292, 313, 314
BccI CCATC 1 cut(s) 136
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 99
BfaI CTAG 2 cut(s) 33, 378
BisI GCNGC 8 cut(s) 78, 87, 232, 235, 238, 303, 306, 327
BlsI GCNGC 8 cut(s) 79, 88, 233, 236, 239, 304, 307, 328
Bme1390I CCNGG 1 cut(s) 99
BmrFI CCNGG 1 cut(s) 99
BmrI ACTGGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 373
BmuI ACTGGG 1 cut(s) 129
BpmI CTGGAG 1 cut(s) 120
Bpu14I TTCGAA 1 cut(s) 173
BsaWI WCCGGW 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 3 cut(s) 121, 135, 409
Bse3DI GCAATG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMI GCAATG 1 cut(s) 70
BseNI ACTGG 3 cut(s) 121, 135, 409
BseXI GCAGC 8 cut(s) 64, 98, 243, 246, 249, 292, 313, 314
BsiSI CCGG 2 cut(s) 53, 60
BslI CCNNNNNNNGG 1 cut(s) 59
BsmI GAATGC 1 cut(s) 352
Bsp119I TTCGAA 1 cut(s) 173
BspT104I TTCGAA 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 70
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 3 cut(s) 121, 135, 409
BssAI RCCGGY 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 99
BstBI TTCGAA 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 61, 300
BstDEI CTNAG 1 cut(s) 432
BstHHI GCGC 1 cut(s) 212
BstMWI GCNNNNNNNGC 5 cut(s) 83, 86, 237, 311, 383
BstNI CCWGG 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 97
BstV1I GCAGC 8 cut(s) 64, 98, 243, 246, 249, 292, 313, 314
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 2 cut(s) 61, 300
CfoI GCGC 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 59
CviAII CATG 1 cut(s) 205
CviJI RGCY 6 cut(s) 77, 89, 104, 305, 314, 377
CviKI_1 RGCY 6 cut(s) 77, 89, 104, 305, 314, 377
DdeI CTNAG 1 cut(s) 432
Eco57I CTGAAG 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 97
FaeI CATG 1 cut(s) 208
FaiI YATR 2 cut(s) 180, 206
FatI CATG 1 cut(s) 204
Fnu4HI GCNGC 8 cut(s) 78, 87, 232, 235, 238, 303, 306, 327
Fsp4HI GCNGC 8 cut(s) 78, 87, 232, 235, 238, 303, 306, 327
FspBI CTAG 2 cut(s) 33, 378
GlaI GCGC 1 cut(s) 211
GluI GCNGC 8 cut(s) 78, 87, 232, 235, 238, 303, 306, 327
GsuI CTGGAG 1 cut(s) 120
HapII CCGG 2 cut(s) 53, 60
HhaI GCGC 1 cut(s) 212
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HinfI GANTC 3 cut(s) 5, 11, 43
HpaII CCGG 2 cut(s) 53, 60
HphI GGTGA 1 cut(s) 131
Hpy188I TCNGA 2 cut(s) 10, 141
Hpy99I CGWCG 3 cut(s) 145, 148, 151
HpyF10VI GCNNNNNNNGC 5 cut(s) 83, 86, 237, 311, 383
HpyF3I CTNAG 1 cut(s) 432
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 1 cut(s) 210
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
LmnI GCTCC 2 cut(s) 101, 295
LpnPI CCDG 8 cut(s) 66, 73, 84, 102, 111, 148, 212, 390
Lsp1109I GCAGC 8 cut(s) 64, 98, 243, 246, 249, 292, 313, 314
LweI GCATC 1 cut(s) 373
MaeI CTAG 2 cut(s) 33, 378
MboII GAAGA 5 cut(s) 162, 199, 202, 232, 290
MluCI AATT 1 cut(s) 28
MlyI GAGTC 1 cut(s) 37
MmeI TCCRAC 1 cut(s) 164
MroNI GCCGGC 1 cut(s) 59
MslI CAYNNNNRTG 1 cut(s) 117
MspA1I CMGCKG 2 cut(s) 89, 305
MspI CCGG 2 cut(s) 53, 60
MspR9I CCNGG 1 cut(s) 99
Mva1269I GAATGC 1 cut(s) 352
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 5 cut(s) 83, 86, 237, 311, 383
NaeI GCCGGC 1 cut(s) 61
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 1 cut(s) 208
NspV TTCGAA 1 cut(s) 173
OliI CACNNNNGTG 1 cut(s) 117
PcsI WCGNNNNNNNCGW 2 cut(s) 149, 155
PctI GAATGC 1 cut(s) 352
PdiI GCCGGC 1 cut(s) 61
PfeI GAWTC 2 cut(s) 5, 11
PkrI GCNGC 8 cut(s) 79, 88, 233, 236, 239, 304, 307, 328
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PvuII CAGCTG 2 cut(s) 89, 305
RseI CAYNNNNRTG 1 cut(s) 117
SatI GCNGC 8 cut(s) 78, 87, 232, 235, 238, 303, 306, 327
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 99
SetI ASST 6 cut(s) 91, 100, 106, 307, 360, 433
SfaNI GCATC 1 cut(s) 373
SfuI TTCGAA 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse9I AATT 1 cut(s) 28
SspMI CTAG 2 cut(s) 33, 378
StyD4I CCNGG 1 cut(s) 97
TaqI TCGA 1 cut(s) 173
TasI AATT 1 cut(s) 28
TfiI GAWTC 2 cut(s) 5, 11
TscAI CASTG 1 cut(s) 121
TseI GCWGC 8 cut(s) 77, 86, 231, 234, 237, 302, 305, 326
TspDTI ATGAA 2 cut(s) 123, 291
TspRI CASTG 1 cut(s) 121
XspI CTAG 2 cut(s) 33, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.