Rorug05G0196200

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0008163
Physical Location & Seq
Reverse (-)
19356618 .. 19357278
661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0196200.1

Sequence Viewer

Length: 390 bp
ATGGCTGTCAAACCTACAGCAAATATGAATAAGAAAAAAGCCTTGGGACGAGATGGAGACCTGCCTTCAATCTCTCTTGATTTCCCGGTTCAGAATCGCCTCCTCCATCATCCTCAGGTGTTTCAAGATTCAATCAACTACGGTGGTGGCTTGAATGGAGTTGCCCACATTCAAGAGGCCGTGCTGCTCAAGCAGATGGAGTCTTTGCAAAAGCTCTTGCTTTCCATGAACAACACCATCTGGGTTTGTGCAGCTGAGTTAGACCGGGTTTGTGCACTTGCCGGGAAGTTCTTGGGCAACCCAATTTCGTTGATATTCATGAAACTGTTCCCTGATATTCATAACACAAGACTCTGGCTAGATTTCAATGGCGGTGGCCATGGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

129

Amino Acids

14.2

Weight (kDa)

8.66

Isoelectric Point (pI)

30.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 69
AciI CCGC 1 cut(s) 372
AcoI YGGCCR 1 cut(s) 376
AgsI TTSAA 6 cut(s) 69, 125, 132, 154, 173, 367
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 2 cut(s) 214, 254
AluI AGCT 2 cut(s) 214, 254
Alw21I GWGCWC 1 cut(s) 277
Alw26I GTCTC 1 cut(s) 51
Alw44I GTGCAC 1 cut(s) 273
AoxI GGCC 3 cut(s) 177, 376, 382
ApaLI GTGCAC 1 cut(s) 273
ApeKI GCWGC 2 cut(s) 184, 251
Asp700I GAANNNNTTC 1 cut(s) 326
AspS9I GGNCC 1 cut(s) 383
AsuC2I CCSGG 3 cut(s) 86, 266, 283
AxyI CCTNAGG 1 cut(s) 114
BaeGI GKGCMC 1 cut(s) 277
BalI TGGCCA 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 277
BbvI GCAGC 2 cut(s) 171, 263
BccI CCATC 4 cut(s) 47, 114, 190, 245
BceAI ACGGC 1 cut(s) 164
BcnI CCSGG 3 cut(s) 86, 266, 283
BcoDI GTCTC 1 cut(s) 51
BfaI CTAG 1 cut(s) 359
BfmI CTRYAG 1 cut(s) 15
BfuAI ACCTGC 1 cut(s) 69
BisI GCNGC 2 cut(s) 185, 252
BlsI GCNGC 2 cut(s) 186, 253
Bme1390I CCNGG 3 cut(s) 86, 266, 283
BmgT120I GGNCC 1 cut(s) 383
BmrFI CCNGG 3 cut(s) 86, 266, 283
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 3 cut(s) 86, 266, 283
BsaI GGTCTC 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 42, 379
Bse21I CCTNAGG 1 cut(s) 114
BseDI CCNNGG 2 cut(s) 42, 379
BseGI GGATG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 128, 246
BseRI GAGGAG 1 cut(s) 92
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 2 cut(s) 171, 263
BsgI GTGCAG 1 cut(s) 270
BshFI GGCC 3 cut(s) 179, 378, 384
BsiHKAI GWGCWC 1 cut(s) 277
BsiSI CCGG 3 cut(s) 86, 265, 282
BslFI GGGAC 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 51
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 3 cut(s) 179, 378, 384
Bso31I GGTCTC 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 277
Bsp19I CCATGG 1 cut(s) 379
BspACI CCGC 1 cut(s) 372
BspANI GGCC 3 cut(s) 179, 378, 384
BspCNI CTCAG 2 cut(s) 127, 247
BspHI TCATGA 1 cut(s) 318
BspMI ACCTGC 1 cut(s) 69
BspTNI GGTCTC 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 42, 379
BssT1I CCWWGG 2 cut(s) 42, 379
Bst4CI ACNGT 2 cut(s) 143, 327
BstDEI CTNAG 2 cut(s) 114, 255
BstDSI CCRYGG 1 cut(s) 379
BstF5I GGATG 1 cut(s) 109
BstMAI GTCTC 1 cut(s) 51
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstSCI CCNGG 3 cut(s) 84, 264, 281
BstSFI CTRYAG 1 cut(s) 15
BstSLI GKGCMC 1 cut(s) 277
BstV1I GCAGC 2 cut(s) 171, 263
Bsu36I CCTNAGG 1 cut(s) 114
BsuRI GGCC 3 cut(s) 179, 378, 384
BtgI CCRYGG 1 cut(s) 379
BtsCI GGATG 1 cut(s) 109
BveI ACCTGC 1 cut(s) 69
CciI TCATGA 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 383
CspCI CAANNNNNGTGG 4 cut(s) 124, 159, 355, 390
CviAII CATG 3 cut(s) 226, 319, 380
CviJI RGCY 9 cut(s) 5, 41, 150, 179, 214, 254, 358, 378, 384
CviKI_1 RGCY 9 cut(s) 5, 41, 150, 179, 214, 254, 358, 378, 384
DdeI CTNAG 2 cut(s) 114, 255
EaeI YGGCCR 1 cut(s) 376
Eco130I CCWWGG 2 cut(s) 42, 379
Eco31I GGTCTC 1 cut(s) 51
Eco81I CCTNAGG 1 cut(s) 114
EcoT14I CCWWGG 2 cut(s) 42, 379
ErhI CCWWGG 2 cut(s) 42, 379
FaeI CATG 3 cut(s) 229, 322, 383
FaiI YATR 5 cut(s) 26, 227, 320, 342, 381
FaqI GGGAC 1 cut(s) 60
FatI CATG 3 cut(s) 225, 318, 379
Fnu4HI GCNGC 2 cut(s) 185, 252
FokI GGATG 1 cut(s) 96
Fsp4HI GCNGC 2 cut(s) 185, 252
FspBI CTAG 1 cut(s) 359
GluI GCNGC 2 cut(s) 185, 252
HaeIII GGCC 3 cut(s) 179, 378, 384
HapII CCGG 3 cut(s) 86, 265, 282
Hin1II CATG 3 cut(s) 229, 322, 383
HinfI GANTC 4 cut(s) 94, 128, 200, 351
HpaII CCGG 3 cut(s) 86, 265, 282
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 4 cut(s) 77, 125, 173, 319
Hpy8I GTNNAC 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 75
HpyCH4III ACNGT 2 cut(s) 143, 327
HpyCH4V TGCA 3 cut(s) 208, 251, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
HpyF3I CTNAG 2 cut(s) 114, 255
Hsp92II CATG 3 cut(s) 229, 322, 383
LpnPI CCDG 8 cut(s) 74, 99, 101, 226, 278, 295, 340, 345
Lsp1109I GCAGC 2 cut(s) 171, 263
MaeI CTAG 1 cut(s) 359
MhlI GDGCHC 1 cut(s) 277
MlsI TGGCCA 1 cut(s) 378
MluCI AATT 1 cut(s) 303
MluNI TGGCCA 1 cut(s) 378
MlyI GAGTC 2 cut(s) 209, 345
MnlI CCTC 4 cut(s) 110, 113, 123, 169
Mox20I TGGCCA 1 cut(s) 378
MroXI GAANNNNTTC 1 cut(s) 326
MscI TGGCCA 1 cut(s) 378
Msp20I TGGCCA 1 cut(s) 378
MspA1I CMGCKG 1 cut(s) 254
MspI CCGG 3 cut(s) 86, 265, 282
MspR9I CCNGG 3 cut(s) 86, 266, 283
MwoI GCNNNNNNNGC 1 cut(s) 190
NciI CCSGG 3 cut(s) 86, 266, 283
NcoI CCATGG 1 cut(s) 379
NlaIII CATG 3 cut(s) 229, 322, 383
PagI TCATGA 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 2 cut(s) 94, 128
PkrI GCNGC 2 cut(s) 186, 253
PleI GAGTC 2 cut(s) 208, 345
PpsI GAGTC 2 cut(s) 208, 345
PspPI GGNCC 1 cut(s) 383
PvuII CAGCTG 1 cut(s) 254
SatI GCNGC 2 cut(s) 185, 252
Sau96I GGNCC 1 cut(s) 383
SchI GAGTC 2 cut(s) 209, 345
ScrFI CCNGG 3 cut(s) 86, 266, 283
SduI GDGCHC 1 cut(s) 277
SetI ASST 5 cut(s) 16, 63, 120, 216, 256
SfcI CTRYAG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 1 cut(s) 303
SsiI CCGC 1 cut(s) 372
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 3 cut(s) 84, 264, 281
StyI CCWWGG 2 cut(s) 42, 379
TaaI ACNGT 2 cut(s) 143, 327
TasI AATT 1 cut(s) 303
TfiI GAWTC 2 cut(s) 94, 128
TseI GCWGC 2 cut(s) 184, 251
TspDTI ATGAA 5 cut(s) 41, 242, 307, 329, 335
VneI GTGCAC 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 326
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.