Rmu_co8253563.1_g000001

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8253563.1
OG0008163
Physical Location & Seq
Reverse (-)
2 .. 364
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8253563.1_g000001.1.cds

Sequence Viewer

Length: 263 bp
atgaaagacgctgcttcatcaataagattggaagatgttatagaaaagcacaaagttccatccactcatgcatcctcaaataaatatgctgtagaaaggaacataacacgaggaaaggtggaaggctcagttgaggctgttcgaaccgcattaaagaaactacaggaaggctgcagtactgaagatgcagaggctgtctgtgctcctgagattctttcccagatttataagtggaaggtggttttctattcttattctaaaac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

88

Amino Acids

9.81

Weight (kDa)

8.56

Isoelectric Point (pI)

58.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 228
AciI CCGC 1 cut(s) 147
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 1 cut(s) 178
Alw21I GWGCWC 1 cut(s) 205
AlwNI CAGNNNCTG 1 cut(s) 194
ApeKI GCWGC 2 cut(s) 11, 171
AsuII TTCGAA 1 cut(s) 142
BauI CACGAG 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 67
BfmI CTRYAG 3 cut(s) 90, 161, 172
BisI GCNGC 2 cut(s) 12, 172
BlsI GCNGC 2 cut(s) 13, 173
BmcAI AGTACT 1 cut(s) 178
BmsI GCATC 2 cut(s) 80, 175
Bpu14I TTCGAA 1 cut(s) 142
BseGI GGATG 2 cut(s) 59, 71
BseMII CTCAG 2 cut(s) 141, 198
BseXI GCAGC 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 205
Bsp119I TTCGAA 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 205
BspACI CCGC 1 cut(s) 147
BspCNI CTCAG 2 cut(s) 140, 199
BspMAI CTGCAG 1 cut(s) 176
BspT104I TTCGAA 1 cut(s) 142
BssSI CACGAG 1 cut(s) 108
Bst2BI CACGAG 1 cut(s) 108
BstBI TTCGAA 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 127, 207
BstF5I GGATG 2 cut(s) 59, 71
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstSFI CTRYAG 3 cut(s) 90, 161, 172
BstV1I GCAGC 1 cut(s) 158
BtsCI GGATG 2 cut(s) 59, 71
CaiI CAGNNNCTG 1 cut(s) 194
CseI GACGC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 177
CviAII CATG 1 cut(s) 68
CviJI RGCY 4 cut(s) 126, 137, 171, 194
CviKI_1 RGCY 4 cut(s) 126, 137, 171, 194
CviQI GTAC 1 cut(s) 177
DdeI CTNAG 2 cut(s) 127, 207
Eco57I CTGAAG 1 cut(s) 201
EcoT22I ATGCAT 1 cut(s) 73
FaeI CATG 1 cut(s) 71
FaiI YATR 5 cut(s) 41, 69, 87, 104, 228
FatI CATG 1 cut(s) 67
Fnu4HI GCNGC 2 cut(s) 12, 172
FokI GGATG 2 cut(s) 46, 58
Fsp4HI GCNGC 2 cut(s) 12, 172
GluI GCNGC 2 cut(s) 12, 172
HgaI GACGC 1 cut(s) 17
Hin1II CATG 1 cut(s) 71
HinfI GANTC 1 cut(s) 211
Hpy188III TCNNGA 1 cut(s) 206
HpyAV CCTTC 3 cut(s) 116, 161, 229
HpyCH4V TGCA 3 cut(s) 71, 174, 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 2 cut(s) 127, 207
Hsp92II CATG 1 cut(s) 71
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 3 cut(s) 149, 219, 233
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 2 cut(s) 80, 175
MboII GAAGA 2 cut(s) 44, 194
MhlI GDGCHC 1 cut(s) 205
MnlI CCTC 4 cut(s) 85, 104, 127, 184
Mph1103I ATGCAT 1 cut(s) 73
MseI TTAA 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 200
NlaIII CATG 1 cut(s) 71
NsiI ATGCAT 1 cut(s) 73
NspV TTCGAA 1 cut(s) 142
PfeI GAWTC 1 cut(s) 211
PkrI GCNGC 2 cut(s) 13, 173
PsiI TTATAA 1 cut(s) 228
PstI CTGCAG 1 cut(s) 176
PstNI CAGNNNCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
SaqAI TTAA 1 cut(s) 152
SatI GCNGC 2 cut(s) 12, 172
ScaI AGTACT 1 cut(s) 178
SduI GDGCHC 1 cut(s) 205
SetI ASST 2 cut(s) 120, 240
SfaNI GCATC 2 cut(s) 80, 175
SfcI CTRYAG 3 cut(s) 90, 161, 172
SfuI TTCGAA 1 cut(s) 142
SgeI CNNG 6 cut(s) 80, 120, 122, 176, 218, 232
SsiI CCGC 1 cut(s) 147
TaqI TCGA 1 cut(s) 142
TatI WGTACW 1 cut(s) 176
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TseI GCWGC 2 cut(s) 11, 171
TspDTI ATGAA 2 cut(s) 6, 17
ZrmI AGTACT 1 cut(s) 178
Zsp2I ATGCAT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.