No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom11g15310 pycom11g15370 |
| rosa_laevigata | RLG00000006965 |
| rosa_multiflora | Rmu_co8253563.1_g000001 Rmu_sc0003371.1_g000003 Rmu_sc0013146.1_g000005 Rmu_sc0013284.1_g000001 Rmu_sc0021708.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00027810 Rroxscaffold_1G00042300 Rroxscaffold_1G00042310 Rroxscaffold_3G00237790 Rroxscaffold_3G00237800 Rroxscaffold_4G00285110 Rroxscaffold_5G00345700 Rroxscaffold_5G00345710 Rroxscaffold_5G00352780 Rroxscaffold_7G00192560 Rroxscaffold_7G00204520 |
| rosa_rugosa | Rorug05G0196200 |
| rosa_samantha | Rh6BG433000 Rh6CG482800 Rh7AG241200 Rh7DG247200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 183 |
| Acc36I | ACCTGC | 1 cut(s) | 77 |
| AfaI | GTAC | 1 cut(s) | 5 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 13 |
| AgsI | TTSAA | 5 cut(s) | 52, 239, 348, 366, 375 |
| AluBI | AGCT | 3 cut(s) | 58, 235, 281 |
| AluI | AGCT | 3 cut(s) | 58, 235, 281 |
| Alw21I | GWGCWC | 1 cut(s) | 121 |
| ApeKI | GCWGC | 8 cut(s) | 55, 150, 153, 206, 232, 278, 281, 302 |
| AsuNHI | GCTAGC | 1 cut(s) | 214 |
| Bbv12I | GWGCWC | 1 cut(s) | 121 |
| BbvI | GCAGC | 8 cut(s) | 67, 162, 165, 193, 244, 268, 289, 290 |
| BfaI | CTAG | 3 cut(s) | 93, 215, 354 |
| BfuAI | ACCTGC | 1 cut(s) | 77 |
| BisI | GCNGC | 8 cut(s) | 56, 151, 154, 207, 233, 279, 282, 303 |
| BlsI | GCNGC | 8 cut(s) | 57, 152, 155, 208, 234, 280, 283, 304 |
| BmsI | GCATC | 2 cut(s) | 34, 349 |
| BmtI | GCTAGC | 1 cut(s) | 218 |
| BsaJI | CCNNGG | 1 cut(s) | 12 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 13 |
| Bse1I | ACTGG | 2 cut(s) | 227, 385 |
| Bse3DI | GCAATG | 1 cut(s) | 216 |
| BseDI | CCNNGG | 1 cut(s) | 12 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 13 |
| BseMI | GCAATG | 1 cut(s) | 216 |
| BseNI | ACTGG | 2 cut(s) | 227, 385 |
| BseRI | GAGGAG | 1 cut(s) | 210 |
| BseXI | GCAGC | 8 cut(s) | 67, 162, 165, 193, 244, 268, 289, 290 |
| BsgI | GTGCAG | 2 cut(s) | 114, 129 |
| BsiHKAI | GWGCWC | 1 cut(s) | 121 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 13 |
| Bsp1286I | GDGCHC | 1 cut(s) | 121 |
| Bsp19I | CCATGG | 1 cut(s) | 12 |
| BspMI | ACCTGC | 1 cut(s) | 77 |
| BspOI | GCTAGC | 1 cut(s) | 218 |
| BsrDI | GCAATG | 1 cut(s) | 216 |
| BsrI | ACTGG | 2 cut(s) | 227, 385 |
| BssECI | CCNNGG | 1 cut(s) | 12 |
| BssT1I | CCWWGG | 1 cut(s) | 12 |
| Bst4CI | ACNGT | 1 cut(s) | 107 |
| BstC8I | GCNNGC | 2 cut(s) | 216, 276 |
| BstDSI | CCRYGG | 1 cut(s) | 12 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 116, 215, 287, 359 |
| BstV1I | GCAGC | 8 cut(s) | 67, 162, 165, 193, 244, 268, 289, 290 |
| BtgI | CCRYGG | 1 cut(s) | 12 |
| BtsI | GCAGTG | 2 cut(s) | 117, 126 |
| BtsIMutI | CAGTG | 3 cut(s) | 112, 117, 126 |
| BveI | ACCTGC | 1 cut(s) | 77 |
| Cac8I | GCNNGC | 2 cut(s) | 216, 276 |
| Csp6I | GTAC | 1 cut(s) | 4 |
| CviAII | CATG | 1 cut(s) | 13 |
| CviJI | RGCY | 7 cut(s) | 58, 206, 235, 281, 290, 326, 353 |
| CviKI_1 | RGCY | 7 cut(s) | 58, 206, 235, 281, 290, 326, 353 |
| CviQI | GTAC | 1 cut(s) | 4 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 183 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 183 |
| Eco130I | CCWWGG | 1 cut(s) | 12 |
| EcoT14I | CCWWGG | 1 cut(s) | 12 |
| EcoT22I | ATGCAT | 1 cut(s) | 49 |
| ErhI | CCWWGG | 1 cut(s) | 12 |
| FaeI | CATG | 1 cut(s) | 16 |
| FaiI | YATR | 3 cut(s) | 14, 73, 84 |
| FatI | CATG | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 8 cut(s) | 56, 151, 154, 207, 233, 279, 282, 303 |
| Fsp4HI | GCNGC | 8 cut(s) | 56, 151, 154, 207, 233, 279, 282, 303 |
| FspBI | CTAG | 3 cut(s) | 93, 215, 354 |
| GluI | GCNGC | 8 cut(s) | 56, 151, 154, 207, 233, 279, 282, 303 |
| Hin1II | CATG | 1 cut(s) | 16 |
| HinfI | GANTC | 1 cut(s) | 17 |
| Hpy188I | TCNGA | 1 cut(s) | 43 |
| HpyAV | CCTTC | 1 cut(s) | 316 |
| HpyCH4III | ACNGT | 1 cut(s) | 107 |
| HpyCH4V | TGCA | 6 cut(s) | 47, 86, 110, 131, 209, 284 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 116, 215, 287, 359 |
| Hsp92II | CATG | 1 cut(s) | 16 |
| LmnI | GCTCC | 2 cut(s) | 116, 271 |
| LpnPI | CCDG | 4 cut(s) | 72, 131, 208, 366 |
| Lsp1109I | GCAGC | 8 cut(s) | 67, 162, 165, 193, 244, 268, 289, 290 |
| LweI | GCATC | 2 cut(s) | 34, 349 |
| MaeI | CTAG | 3 cut(s) | 93, 215, 354 |
| MaeIII | GTNAC | 4 cut(s) | 64, 74, 101, 185 |
| MboII | GAAGA | 4 cut(s) | 46, 151, 251, 266 |
| MhlI | GDGCHC | 1 cut(s) | 121 |
| MlyI | GAGTC | 1 cut(s) | 11 |
| MnlI | CCTC | 2 cut(s) | 188, 195 |
| Mph1103I | ATGCAT | 1 cut(s) | 49 |
| MseI | TTAA | 1 cut(s) | 30 |
| MspA1I | CMGCKG | 1 cut(s) | 281 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 116, 215, 287, 359 |
| NcoI | CCATGG | 1 cut(s) | 12 |
| NheI | GCTAGC | 1 cut(s) | 214 |
| NlaIII | CATG | 1 cut(s) | 16 |
| NmuCI | GTSAC | 3 cut(s) | 64, 74, 185 |
| NsiI | ATGCAT | 1 cut(s) | 49 |
| PkrI | GCNGC | 8 cut(s) | 57, 152, 155, 208, 234, 280, 283, 304 |
| PleI | GAGTC | 1 cut(s) | 11 |
| PpsI | GAGTC | 1 cut(s) | 11 |
| PvuII | CAGCTG | 1 cut(s) | 281 |
| RsaI | GTAC | 1 cut(s) | 5 |
| RsaNI | GTAC | 1 cut(s) | 4 |
| SaqAI | TTAA | 1 cut(s) | 30 |
| SatI | GCNGC | 8 cut(s) | 56, 151, 154, 207, 233, 279, 282, 303 |
| SchI | GAGTC | 1 cut(s) | 11 |
| SduI | GDGCHC | 1 cut(s) | 121 |
| SetI | ASST | 7 cut(s) | 9, 60, 91, 187, 237, 283, 336 |
| SfaNI | GCATC | 2 cut(s) | 34, 349 |
| SspMI | CTAG | 3 cut(s) | 93, 215, 354 |
| StyI | CCWWGG | 1 cut(s) | 12 |
| TaaI | ACNGT | 1 cut(s) | 107 |
| Tru1I | TTAA | 1 cut(s) | 30 |
| Tru9I | TTAA | 1 cut(s) | 30 |
| TscAI | CASTG | 3 cut(s) | 112, 117, 133 |
| TseFI | GTSAC | 3 cut(s) | 64, 74, 185 |
| TseI | GCWGC | 8 cut(s) | 55, 150, 153, 206, 232, 278, 281, 302 |
| Tsp45I | GTSAC | 3 cut(s) | 64, 74, 185 |
| TspDTI | ATGAA | 1 cut(s) | 267 |
| TspRI | CASTG | 3 cut(s) | 112, 117, 133 |
| XspI | CTAG | 3 cut(s) | 93, 215, 354 |
| Zsp2I | ATGCAT | 1 cut(s) | 49 |