Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008163

Physical Location & Seq

Genomic Coordinates Reverse (-)

53956979 .. 53958146

Gene Structure 1168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00204520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCTGCTTCACTTGCAGCACTAGCTTCGCCCCCAAGCCCAAACCCGCATCCTCCAAACCCGACCCGGACTCTCCTCGCCGACTTCGGCCGCAGCTCTTCATCCCCCGGATTGTCCGCGGCGACAATGGCAAGCTCACGAACTACTTTTACAGCCAACAATAATGGCGACATTGCACTACACATTGCTGCCGGATATGGGCTTGATGGTATAGTCGAAGTTCTTATTGGGGCAGCAAAAGCTCGTCATGACGATGTTGAGAAACAGGTTATAGAAGCTTGGCAAATGTGTCCAAAACCATTGTTGGAGTTGGATTGCAGCTTGGATGGAATTGGTTCCCGAGTTGGAGAAGAAGAGATGGGTAATGCTCCTTTGAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

127

Amino Acids

13.08

Weight (kDa)

4.81

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008163)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g15310 pycom11g15370
rosa_laevigata	RLG00000006965
rosa_multiflora	Rmu_co8253563.1_g000001 Rmu_sc0003371.1_g000003 Rmu_sc0013146.1_g000005 Rmu_sc0013284.1_g000001 Rmu_sc0021708.1_g000005
rosa_roxburghii	Rroxscaffold_1G00027810 Rroxscaffold_1G00042300 Rroxscaffold_1G00042310 Rroxscaffold_3G00237790 Rroxscaffold_3G00237800 Rroxscaffold_4G00285110 Rroxscaffold_5G00345700 Rroxscaffold_5G00345710 Rroxscaffold_5G00352780 Rroxscaffold_7G00192560 Rroxscaffold_7G00204520
rosa_rugosa	Rorug05G0196200
rosa_samantha	Rh6BG433000 Rh6CG482800 Rh7AG241200 Rh7DG247200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	119
AciI	CCGC	4 cut(s)	47, 91, 117, 119
AcoI	YGGCCR	1 cut(s)	88
AfiI	CCNNNNNNNGG	1 cut(s)	198
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AluBI	AGCT	6 cut(s)	26, 96, 135, 242, 278, 321
AluI	AGCT	6 cut(s)	26, 96, 135, 242, 278, 321
Ama87I	CYCGRG	1 cut(s)	339
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	6 cut(s)	5, 17, 93, 188, 233, 318
Asp700I	GAANNNNTTC	1 cut(s)	334
AsuC2I	CCSGG	2 cut(s)	67, 108
AvaI	CYCGRG	1 cut(s)	339
BbvI	GCAGC	5 cut(s)	29, 105, 175, 245, 330
BccI	CCATC	3 cut(s)	200, 320, 352
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BcnI	CCSGG	2 cut(s)	67, 108
BfaI	CTAG	1 cut(s)	23
BisI	GCNGC	8 cut(s)	6, 18, 91, 94, 120, 189, 234, 319
BlsI	GCNGC	8 cut(s)	7, 19, 92, 95, 121, 190, 235, 320
Bme1390I	CCNGG	2 cut(s)	67, 108
BmeT110I	CYCGRG	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	337
BmrFI	CCNGG	2 cut(s)	67, 108
BmsI	GCATC	1 cut(s)	58
BpuMI	CCSGG	2 cut(s)	67, 108
BsaJI	CCNNGG	2 cut(s)	106, 117
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
Bse3DI	GCAATG	2 cut(s)	171, 183
BseDI	CCNNGG	2 cut(s)	106, 117
BseGI	GGATG	3 cut(s)	49, 101, 331
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseMI	GCAATG	2 cut(s)	171, 183
BseRI	GAGGAG	1 cut(s)	65
BseX3I	CGGCCG	1 cut(s)	88
BseXI	GCAGC	5 cut(s)	29, 105, 175, 245, 330
Bsh1236I	CGCG	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	90
BsiEI	CGRYCG	1 cut(s)	91
BsiHKCI	CYCGRG	1 cut(s)	339
BsiSI	CCGG	3 cut(s)	67, 108, 192
BslI	CCNNNNNNNGG	1 cut(s)	198
BsnI	GGCC	1 cut(s)	90
BsoBI	CYCGRG	1 cut(s)	339
BspACI	CCGC	4 cut(s)	47, 91, 117, 119
BspANI	GGCC	1 cut(s)	90
BspFNI	CGCG	1 cut(s)	119
BspHI	TCATGA	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	337
BspQI	GCTCTTC	1 cut(s)	103
BsrDI	GCAATG	2 cut(s)	171, 183
BssECI	CCNNGG	2 cut(s)	106, 117
Bst6I	CTCTTC	2 cut(s)	103, 348
BstC8I	GCNNGC	1 cut(s)	133
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	3 cut(s)	49, 101, 331
BstFNI	CGCG	1 cut(s)	119
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 23, 128, 239
BstSCI	CCNGG	2 cut(s)	65, 106
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	5 cut(s)	29, 105, 175, 245, 330
BstZI	CGGCCG	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	90
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	3 cut(s)	49, 101, 331
Cac8I	GCNNGC	1 cut(s)	133
CciI	TCATGA	1 cut(s)	247
Cfr42I	CCGCGG	1 cut(s)	120
CviAII	CATG	1 cut(s)	248
EaeI	YGGCCR	1 cut(s)	88
EagI	CGGCCG	1 cut(s)	88
Eam1104I	CTCTTC	2 cut(s)	103, 348
EarI	CTCTTC	2 cut(s)	103, 348
EclXI	CGGCCG	1 cut(s)	88
Eco52I	CGGCCG	1 cut(s)	88
Eco88I	CYCGRG	1 cut(s)	339
FaeI	CATG	1 cut(s)	251
FaiI	YATR	4 cut(s)	198, 212, 249, 272
FatI	CATG	1 cut(s)	247
FauI	CCCGC	1 cut(s)	54
Fnu4HI	GCNGC	8 cut(s)	6, 18, 91, 94, 120, 189, 234, 319
FokI	GGATG	3 cut(s)	36, 88, 338
Fsp4HI	GCNGC	8 cut(s)	6, 18, 91, 94, 120, 189, 234, 319
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	8 cut(s)	6, 18, 91, 94, 120, 189, 234, 319
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	3 cut(s)	67, 108, 192
Hin1II	CATG	1 cut(s)	251
HindIII	AAGCTT	1 cut(s)	276
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	3 cut(s)	67, 108, 192
Hpy188III	TCNNGA	3 cut(s)	138, 248, 339
HpyCH4V	TGCA	3 cut(s)	17, 176, 318
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 23, 128, 239
Hsp92II	CATG	1 cut(s)	251
KspI	CCGCGG	1 cut(s)	120
LguI	GCTCTTC	1 cut(s)	103
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	4 cut(s)	80, 121, 205, 251
Lsp1109I	GCAGC	5 cut(s)	29, 105, 175, 245, 330
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	23
MboII	GAAGA	3 cut(s)	90, 362, 365
MluCI	AATT	1 cut(s)	330
MlyI	GAGTC	1 cut(s)	64
MmeI	TCCRAC	3 cut(s)	285, 291, 325
MnlI	CCTC	2 cut(s)	63, 86
MroXI	GAANNNNTTC	1 cut(s)	334
MslI	CAYNNNNRTG	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	3 cut(s)	67, 108, 192
MspR9I	CCNGG	2 cut(s)	67, 108
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	4 cut(s)	14, 23, 128, 239
NciI	CCSGG	2 cut(s)	67, 108
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	1 cut(s)	337
PagI	TCATGA	1 cut(s)	247
PciSI	GCTCTTC	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	334
PkrI	GCNGC	8 cut(s)	7, 19, 92, 95, 121, 190, 235, 320
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	337
PsrI	GAACNNNNNNTAC	2 cut(s)	133, 165
RseI	CAYNNNNRTG	1 cut(s)	252
SacII	CCGCGG	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	103
SatI	GCNGC	8 cut(s)	6, 18, 91, 94, 120, 189, 234, 319
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	2 cut(s)	67, 108
SetI	ASST	7 cut(s)	28, 98, 137, 244, 270, 280, 323
SfaNI	GCATC	1 cut(s)	58
Sfr303I	CCGCGG	1 cut(s)	120
SgrBI	CCGCGG	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	252
Sse9I	AATT	1 cut(s)	330
SsiI	CCGC	4 cut(s)	47, 91, 117, 119
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	65, 106
TaqI	TCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	330
TauI	GCSGC	2 cut(s)	93, 122
TseI	GCWGC	6 cut(s)	5, 17, 93, 188, 233, 318
TspDTI	ATGAA	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	334
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.