Rroxscaffold_1G00042310

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008163
Physical Location & Seq
Reverse (-)
60399045 .. 60399979
935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042310.1

Sequence Viewer

Length: 861 bp
ATGGATCCCGTAATGAATTCCTATGTGGAGAGAATGCAAGCTATGACAAGGAAATGGTACTTAAATATCTTGGAGGCTGATAAGGTACAACCACCGAAGAAAACAGAAGATGGGAAGCTATATACACCAACTGCTGTTGATTTATTCAGGATCCTTGGAGAGCAAGAGCAAATTGTTCGTGACAATAGCACGGGTCTCATGCTCTACAGAATTGCTTTAGCAATTATCCAGGTAATGATTGATTTTCAAGCTGCTGAAAGGCAGAAACTTGAGGAACCTGCTTCAGAAGTTGGTTTGGAACCCTTATGTGCAATGATTAACAACAATCTGTGCTGCTATGATCTTGCAATGGAACTAAGTAATAGCACTTTGGAAGAATCATACAGAGAAAGAACTGCAAACACAGAATTCAAACAGAAGGAGAAGCCATCTTTTGCTAGAAAGCGTGGAAATTTGGATGCACCTAATACAGATACAAAAAGGAGAATATTGGGCTTAATGGAAAAGGCTGCATCTTCAATAATCTTGAAAGATATATTAAGGAAGTACCCAGTTCCATCTCATGCTTACTCCATGAAAAATGTTGTGGACACGAAAATGTCATTGGGAAAGGTGGAAGTCTCGATTGAGGCCGCTAGAACAGCATTGAGAAAACTAGATGAAGGGTGCAGTACCAAAGATGCAGAAGCCGTTTGTGGGCCTGAGGTTCTTAAACAGATATTTAGATGGAAGTTGATAGTGGGTGATTGGTGTCCAAACCCATTGTTGGAGTTGGATTGCAGCTTGGATGGAGTTGGTTCCCGTGTTGGAGAAGAAGAGATGGTAAGTTTTAGTCTCTGCCATCTAGCAGTTATGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec6

Protein Analysis

286

Amino Acids

32.28

Weight (kDa)

5.52

Isoelectric Point (pI)

38.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec6 PF06046 2 - 141 2.4e-21 Exocyst complex component Sec6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 286
AciI CCGC 1 cut(s) 633
AclWI GGATC 3 cut(s) 12, 145, 158
AcsI RAATTY 3 cut(s) 16, 407, 451
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 4 cut(s) 59, 87, 548, 673
AfiI CCNNNNNNNGG 2 cut(s) 696, 766
AgsI TTSAA 4 cut(s) 248, 412, 519, 529
AjnI CCWGG 1 cut(s) 228
AjuI GAANNNNNNNTTGG 2 cut(s) 587, 619
AluBI AGCT 4 cut(s) 41, 118, 251, 783
AluI AGCT 4 cut(s) 41, 118, 251, 783
Alw26I GTCTC 3 cut(s) 200, 625, 839
AlwI GGATC 3 cut(s) 12, 145, 158
AoxI GGCC 2 cut(s) 630, 698
ApeKI GCWGC 4 cut(s) 251, 333, 509, 780
ApoI RAATTY 3 cut(s) 16, 407, 451
AspS9I GGNCC 1 cut(s) 698
AsuHPI GGTGA 1 cut(s) 755
AxyI CCTNAGG 1 cut(s) 702
BamHI GGATCC 2 cut(s) 4, 150
BbvI GCAGC 4 cut(s) 238, 320, 496, 792
BccI CCATC 7 cut(s) 104, 436, 565, 720, 782, 814, 849
BceAI ACGGC 1 cut(s) 674
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciT130I CCWGG 1 cut(s) 230
BcoDI GTCTC 3 cut(s) 200, 625, 839
BfaI CTAG 4 cut(s) 438, 636, 656, 845
BfmI CTRYAG 1 cut(s) 205
BfuAI ACCTGC 1 cut(s) 286
BisI GCNGC 5 cut(s) 252, 334, 510, 633, 781
BlsI GCNGC 5 cut(s) 253, 335, 511, 634, 782
Bme1390I CCNGG 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 698
BmiI GGNNCC 5 cut(s) 6, 152, 276, 300, 799
BmrFI CCNGG 1 cut(s) 230
BmrI ACTGGG 1 cut(s) 545
BmsI GCATC 3 cut(s) 448, 521, 670
BmuI ACTGGG 1 cut(s) 545
BpuEI CTTGAG 1 cut(s) 290
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 154
Bsc4I CCNNNNNNNGG 2 cut(s) 696, 766
Bse1I ACTGG 1 cut(s) 551
Bse21I CCTNAGG 1 cut(s) 702
Bse3DI GCAATG 2 cut(s) 318, 354
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 154
BseGI GGATG 2 cut(s) 463, 793
BseLI CCNNNNNNNGG 2 cut(s) 696, 766
BseMI GCAATG 2 cut(s) 318, 354
BseMII CTCAG 1 cut(s) 693
BseNI ACTGG 1 cut(s) 551
BseXI GCAGC 4 cut(s) 238, 320, 496, 792
BsgI GTGCAG 1 cut(s) 688
BshFI GGCC 2 cut(s) 632, 700
BslI CCNNNNNNNGG 2 cut(s) 696, 766
BsmAI GTCTC 3 cut(s) 200, 625, 839
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 2 cut(s) 632, 700
Bso31I GGTCTC 1 cut(s) 200
Bsp143I GATC 3 cut(s) 4, 150, 340
BspACI CCGC 1 cut(s) 633
BspANI GGCC 2 cut(s) 632, 700
BspCNI CTCAG 1 cut(s) 694
BspLI GGNNCC 5 cut(s) 6, 152, 276, 300, 799
BspMI ACCTGC 1 cut(s) 286
BspPI GGATC 3 cut(s) 12, 145, 158
BspTNI GGTCTC 1 cut(s) 200
BsrDI GCAATG 2 cut(s) 318, 354
BsrI ACTGG 1 cut(s) 551
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 3 cut(s) 4, 150, 340
BssT1I CCWWGG 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 810
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 356, 702
BstF5I GGATG 2 cut(s) 463, 793
BstKTI GATC 3 cut(s) 7, 153, 343
BstMAI GTCTC 3 cut(s) 200, 625, 839
BstMBI GATC 3 cut(s) 4, 150, 340
BstMWI GCNNNNNNNGC 1 cut(s) 641
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 228
BstSFI CTRYAG 1 cut(s) 205
BstV1I GCAGC 4 cut(s) 238, 320, 496, 792
BstX2I RGATCY 2 cut(s) 4, 150
BstYI RGATCY 2 cut(s) 4, 150
Bsu36I CCTNAGG 1 cut(s) 702
BsuRI GGCC 2 cut(s) 632, 700
BtsCI GGATG 2 cut(s) 463, 793
BveI ACCTGC 1 cut(s) 286
Cac8I GCNNGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 698
Csp6I GTAC 4 cut(s) 58, 86, 547, 672
CviAII CATG 3 cut(s) 199, 563, 574
CviQI GTAC 4 cut(s) 58, 86, 547, 672
DdeI CTNAG 2 cut(s) 356, 702
DpnI GATC 3 cut(s) 6, 152, 342
DpnII GATC 3 cut(s) 4, 150, 340
Eam1104I CTCTTC 1 cut(s) 810
EarI CTCTTC 1 cut(s) 810
Eco130I CCWWGG 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 267
Eco81I CCTNAGG 1 cut(s) 702
EcoRI GAATTC 2 cut(s) 16, 407
EcoRII CCWGG 1 cut(s) 228
EcoT14I CCWWGG 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 3 cut(s) 202, 566, 577
FatI CATG 3 cut(s) 198, 562, 573
Fnu4HI GCNGC 5 cut(s) 252, 334, 510, 633, 781
FokI GGATG 2 cut(s) 470, 800
Fsp4HI GCNGC 5 cut(s) 252, 334, 510, 633, 781
FspBI CTAG 4 cut(s) 438, 636, 656, 845
GluI GCNGC 5 cut(s) 252, 334, 510, 633, 781
HaeIII GGCC 2 cut(s) 632, 700
Hin1II CATG 3 cut(s) 202, 566, 577
HinfI GANTC 1 cut(s) 377
HphI GGTGA 1 cut(s) 755
Hpy166II GTNNAC 1 cut(s) 589
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 4 cut(s) 148, 179, 526, 622
Hpy8I GTNNAC 1 cut(s) 589
HpyAV CCTTC 2 cut(s) 412, 656
HpyCH4V TGCA 9 cut(s) 37, 311, 347, 398, 461, 512, 669, 683, 780
HpyF10VI GCNNNNNNNGC 1 cut(s) 641
HpyF3I CTNAG 2 cut(s) 356, 702
Hsp92II CATG 3 cut(s) 202, 566, 577
Kzo9I GATC 3 cut(s) 4, 150, 340
LpnPI CCDG 6 cut(s) 133, 215, 242, 291, 564, 714
Lsp1109I GCAGC 4 cut(s) 238, 320, 496, 792
LweI GCATC 3 cut(s) 448, 521, 670
MaeI CTAG 4 cut(s) 438, 636, 656, 845
MaeIII GTNAC 1 cut(s) 179
MalI GATC 3 cut(s) 6, 152, 342
MboI GATC 3 cut(s) 4, 150, 340
MboII GAAGA 6 cut(s) 109, 119, 386, 507, 824, 827
MflI RGATCY 2 cut(s) 4, 150
MluCI AATT 6 cut(s) 16, 171, 210, 222, 407, 451
MmeI TCCRAC 3 cut(s) 747, 753, 787
MnlI CCTC 4 cut(s) 67, 265, 622, 697
MseI TTAA 5 cut(s) 62, 318, 497, 539, 711
MslI CAYNNNNRTG 1 cut(s) 596
MspR9I CCNGG 1 cut(s) 230
Mva1269I GAATGC 1 cut(s) 39
MvaI CCWGG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 641
NdeII GATC 3 cut(s) 4, 150, 340
NlaIII CATG 3 cut(s) 202, 566, 577
NlaIV GGNNCC 5 cut(s) 6, 152, 276, 300, 799
NmuCI GTSAC 1 cut(s) 179
PctI GAATGC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 377
PkrI GCNGC 5 cut(s) 253, 335, 511, 634, 782
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 5 cut(s) 6, 152, 276, 300, 799
PspPI GGNCC 1 cut(s) 698
PsuI RGATCY 2 cut(s) 4, 150
RsaI GTAC 4 cut(s) 59, 87, 548, 673
RsaNI GTAC 4 cut(s) 58, 86, 547, 672
RseI CAYNNNNRTG 1 cut(s) 596
SaqAI TTAA 5 cut(s) 62, 318, 497, 539, 711
SatI GCNGC 5 cut(s) 252, 334, 510, 633, 781
Sau3AI GATC 3 cut(s) 4, 150, 340
Sau96I GGNCC 1 cut(s) 698
ScrFI CCNGG 1 cut(s) 230
SfaNI GCATC 3 cut(s) 448, 521, 670
SfcI CTRYAG 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 596
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 6 cut(s) 16, 171, 210, 222, 407, 451
SsiI CCGC 1 cut(s) 633
SspI AATATT 1 cut(s) 489
SspMI CTAG 4 cut(s) 438, 636, 656, 845
StyD4I CCNGG 1 cut(s) 228
StyI CCWWGG 1 cut(s) 154
TaqI TCGA 1 cut(s) 623
TasI AATT 6 cut(s) 16, 171, 210, 222, 407, 451
TauI GCSGC 1 cut(s) 635
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 5 cut(s) 62, 318, 497, 539, 711
Tru9I TTAA 5 cut(s) 62, 318, 497, 539, 711
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 4 cut(s) 251, 333, 509, 780
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 3 cut(s) 29, 590, 675
XapI RAATTY 3 cut(s) 16, 407, 451
XspI CTAG 4 cut(s) 438, 636, 656, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.