Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013284.1

Orthogroup ID

OG0008163

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2681

Gene Structure 2681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013284.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

gataaagtacgggtggtacaatctgatacagtgagcttaattcaaggaggatttactgctggaagcactacatctgagtcaagttgccaggcagttaggttatcctgtgatattttggttgagaggctagctcctctcaagcaaatatttcaggagcaaatgggttctattaaatgggagacgcttattgaaaaggcatacttgcaagctttgaacttatcagcaagttctttctatgttcctgattttacttctatgcgataccttaactatggtgctgcagtgagtgaggttgaggtagatcttctgactggagaaactagaatattgcaatcagatattatctacgattgtggtcagagtctcaaccctgctgtggatttaggacagatcgaaggtgcttttgttcaaggaattgggtttttcatgcttgaagaatacatggaaaattctgagggattggtgatttctaatggtacatggacgtataaaattccttccatagacactatacccaagcagttcaatgtcgaaatactaaatagtggacaacacagtaatcgtgttctctcttcaaaagcttctggtgagcctccattacttctagcagtttcagttcactgcgctgcaagagctgcgatcaaagaatccagaaaacagcttcttcaatggggaggcctggatgggtctgcttcaatgttccagatggccgttccagctaccatgcctgttgtgaaggagttatgtgggctggaaagtgtggagtgctacttggaatggattgcaggcagaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004029 GO:0004031 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009687 GO:0009688 GO:0009850 GO:0009851 GO:0009987 GO:0010293 GO:0010817 GO:0016053 GO:0016106 GO:0016114 GO:0016143 GO:0016491 GO:0016620 GO:0016623 GO:0016903 GO:0018479 GO:0018488 GO:0019748 GO:0019752 GO:0019757 GO:0019760 GO:0019899 GO:0031625 GO:0032787 GO:0036094 GO:0042445 GO:0042446 GO:0043167 GO:0043168 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0048037 GO:0050302 GO:0050660 GO:0050662 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901564 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00380 ko00906 ko01100 ko01110 map00380 map00906 map01100 map01110

Pfam Domains

Protein Families

Ald_Xan_dh_C Ald_Xan_dh_C2 CO_deh_flav_C FAD_binding_5 Fer2 Fer2_2

Protein Analysis

265

Amino Acids

28.98

Weight (kDa)

4.77

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008163)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g15310 pycom11g15370
rosa_laevigata	RLG00000006965
rosa_multiflora	Rmu_co8253563.1_g000001 Rmu_sc0003371.1_g000003 Rmu_sc0013146.1_g000005 Rmu_sc0013284.1_g000001 Rmu_sc0021708.1_g000005
rosa_roxburghii	Rroxscaffold_1G00027810 Rroxscaffold_1G00042300 Rroxscaffold_1G00042310 Rroxscaffold_3G00237790 Rroxscaffold_3G00237800 Rroxscaffold_4G00285110 Rroxscaffold_5G00345700 Rroxscaffold_5G00345710 Rroxscaffold_5G00352780 Rroxscaffold_7G00192560 Rroxscaffold_7G00204520
rosa_rugosa	Rorug05G0196200
rosa_samantha	Rh6BG433000 Rh6CG482800 Rh7AG241200 Rh7DG247200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	708
AcsI	RAATTY	2 cut(s)	448, 492
AfaI	GTAC	3 cut(s)	9, 18, 478
AfiI	CCNNNNNNNGG	1 cut(s)	376
AgsI	TTSAA	9 cut(s)	44, 191, 214, 410, 434, 526, 576, 668, 696
AjnI	CCWGG	2 cut(s)	87, 678
AluBI	AGCT	7 cut(s)	36, 131, 209, 581, 635, 661, 719
AluI	AGCT	7 cut(s)	36, 131, 209, 581, 635, 661, 719
Alw26I	GTCTC	2 cut(s)	173, 368
AoxI	GGCC	2 cut(s)	676, 708
ApeKI	GCWGC	3 cut(s)	278, 626, 635
ApoI	RAATTY	2 cut(s)	448, 492
AspLEI	GCGC	1 cut(s)	626
AsuHPI	GGTGA	2 cut(s)	475, 599
AsuNHI	GCTAGC	1 cut(s)	127
BbvI	GCAGC	3 cut(s)	265, 613, 622
BccI	CCATC	2 cut(s)	677, 700
BceAI	ACGGC	1 cut(s)	695
BciT130I	CCWGG	2 cut(s)	89, 680
BcoDI	GTCTC	2 cut(s)	173, 368
BfaI	CTAG	3 cut(s)	128, 321, 605
BfmI	CTRYAG	1 cut(s)	279
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	3 cut(s)	279, 627, 636
BlsI	GCNGC	3 cut(s)	280, 628, 637
Bme1390I	CCNGG	2 cut(s)	89, 680
BmrFI	CCNGG	2 cut(s)	89, 680
BmtI	GCTAGC	1 cut(s)	131
BplI	GAGNNNNNCTC	2 cut(s)	115, 147
BpmI	CTGGAG	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse1I	ACTGG	1 cut(s)	316
BseBI	CCWGG	2 cut(s)	89, 680
BseGI	GGATG	1 cut(s)	688
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMII	CTCAG	2 cut(s)	66, 444
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	3 cut(s)	265, 613, 622
BshFI	GGCC	2 cut(s)	678, 710
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmAI	GTCTC	2 cut(s)	173, 368
BsmBI	CGTCTC	1 cut(s)	173
BsnI	GGCC	2 cut(s)	678, 710
Bsp143I	GATC	3 cut(s)	301, 390, 639
BspANI	GGCC	2 cut(s)	678, 710
BspCNI	CTCAG	2 cut(s)	67, 445
BspMAI	CTGCAG	1 cut(s)	283
BspOI	GCTAGC	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	316
BssMI	GATC	3 cut(s)	301, 390, 639
Bst2UI	CCWGG	2 cut(s)	89, 680
Bst4CI	ACNGT	2 cut(s)	31, 557
Bst6I	CTCTTC	1 cut(s)	577
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstC8I	GCNNGC	3 cut(s)	129, 207, 787
BstDEI	CTNAG	2 cut(s)	75, 453
BstF5I	GGATG	1 cut(s)	688
BstHHI	GCGC	1 cut(s)	626
BstKTI	GATC	3 cut(s)	304, 393, 642
BstMAI	GTCTC	2 cut(s)	173, 368
BstMBI	GATC	3 cut(s)	301, 390, 639
BstMWI	GCNNNNNNNGC	3 cut(s)	632, 635, 716
BstNI	CCWGG	2 cut(s)	89, 680
BstSCI	CCNGG	2 cut(s)	87, 678
BstSFI	CTRYAG	1 cut(s)	279
BstV1I	GCAGC	3 cut(s)	265, 613, 622
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	2 cut(s)	678, 710
BtsCI	GGATG	1 cut(s)	688
BtsI	GCAGTG	2 cut(s)	288, 619
BtsIMutI	CAGTG	3 cut(s)	36, 288, 619
Cac8I	GCNNGC	3 cut(s)	129, 207, 787
CfoI	GCGC	1 cut(s)	626
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	3 cut(s)	8, 17, 477
CviAII	CATG	4 cut(s)	427, 442, 480, 724
CviQI	GTAC	3 cut(s)	8, 17, 477
DdeI	CTNAG	2 cut(s)	75, 453
DpnI	GATC	3 cut(s)	303, 392, 641
DpnII	GATC	3 cut(s)	301, 390, 639
EaeI	YGGCCR	1 cut(s)	708
Eam1104I	CTCTTC	1 cut(s)	577
EarI	CTCTTC	1 cut(s)	577
Eco147I	AGGCCT	1 cut(s)	678
EcoRII	CCWGG	2 cut(s)	87, 678
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	4 cut(s)	430, 445, 483, 727
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FatI	CATG	4 cut(s)	426, 441, 479, 723
Fnu4HI	GCNGC	3 cut(s)	279, 627, 636
FokI	GGATG	1 cut(s)	695
Fsp4HI	GCNGC	3 cut(s)	279, 627, 636
FspBI	CTAG	3 cut(s)	128, 321, 605
GlaI	GCGC	1 cut(s)	625
GluI	GCNGC	3 cut(s)	279, 627, 636
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	678, 710
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	626
Hin1II	CATG	4 cut(s)	430, 445, 483, 727
Hin6I	GCGC	1 cut(s)	624
HinP1I	GCGC	1 cut(s)	624
HindIII	AAGCTT	2 cut(s)	207, 579
HinfI	GANTC	3 cut(s)	77, 361, 647
HphI	GGTGA	2 cut(s)	475, 599
Hpy166II	GTNNAC	2 cut(s)	548, 619
Hpy188I	TCNGA	6 cut(s)	25, 76, 309, 337, 360, 454
Hpy188III	TCNNGA	4 cut(s)	152, 242, 651, 703
Hpy8I	GTNNAC	2 cut(s)	548, 619
HpyAV	CCTTC	3 cut(s)	389, 507, 730
HpyCH4III	ACNGT	2 cut(s)	31, 557
HpyCH4IV	ACGT	1 cut(s)	485
HpyCH4V	TGCA	5 cut(s)	205, 281, 331, 629, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	632, 635, 716
HpyF3I	CTNAG	2 cut(s)	75, 453
HpySE526I	ACGT	1 cut(s)	485
Hsp92II	CATG	4 cut(s)	430, 445, 483, 727
HspAI	GCGC	1 cut(s)	624
Kzo9I	GATC	3 cut(s)	301, 390, 639
LmnI	GCTCC	2 cut(s)	136, 154
Lsp1109I	GCAGC	3 cut(s)	265, 613, 622
MaeI	CTAG	3 cut(s)	128, 321, 605
MaeII	ACGT	1 cut(s)	485
MalI	GATC	3 cut(s)	303, 392, 641
MboI	GATC	3 cut(s)	301, 390, 639
MboII	GAAGA	4 cut(s)	296, 446, 564, 656
MflI	RGATCY	1 cut(s)	301
MluCI	AATT	4 cut(s)	39, 414, 448, 492
MlyI	GAGTC	2 cut(s)	86, 370
MnlI	CCTC	8 cut(s)	41, 117, 144, 283, 289, 448, 603, 668
MseI	TTAA	3 cut(s)	38, 171, 267
MspR9I	CCNGG	2 cut(s)	89, 680
MvaI	CCWGG	2 cut(s)	89, 680
MwoI	GCNNNNNNNGC	3 cut(s)	632, 635, 716
NdeII	GATC	3 cut(s)	301, 390, 639
NheI	GCTAGC	1 cut(s)	127
NlaIII	CATG	4 cut(s)	430, 445, 483, 727
PceI	AGGCCT	1 cut(s)	678
PfeI	GAWTC	1 cut(s)	647
PkrI	GCNGC	3 cut(s)	280, 628, 637
PleI	GAGTC	2 cut(s)	85, 369
PpsI	GAGTC	2 cut(s)	85, 369
Psp6I	CCWGG	2 cut(s)	87, 678
PspGI	CCWGG	2 cut(s)	87, 678
PstI	CTGCAG	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	301
RsaI	GTAC	3 cut(s)	9, 18, 478
RsaNI	GTAC	3 cut(s)	8, 17, 477
SaqAI	TTAA	3 cut(s)	38, 171, 267
SatI	GCNGC	3 cut(s)	279, 627, 636
Sau3AI	GATC	3 cut(s)	301, 390, 639
SchI	GAGTC	2 cut(s)	86, 370
ScrFI	CCNGG	2 cut(s)	89, 680
SfcI	CTRYAG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	4 cut(s)	39, 414, 448, 492
SseBI	AGGCCT	1 cut(s)	678
SspI	AATATT	2 cut(s)	147, 327
SspMI	CTAG	3 cut(s)	128, 321, 605
StuI	AGGCCT	1 cut(s)	678
StyD4I	CCNGG	2 cut(s)	87, 678
TaaI	ACNGT	2 cut(s)	31, 557
TaiI	ACGT	1 cut(s)	488
TaqI	TCGA	2 cut(s)	393, 531
TasI	AATT	4 cut(s)	39, 414, 448, 492
TfiI	GAWTC	1 cut(s)	647
Tru1I	TTAA	3 cut(s)	38, 171, 267
Tru9I	TTAA	3 cut(s)	38, 171, 267
TscAI	CASTG	3 cut(s)	36, 288, 626
TseI	GCWGC	3 cut(s)	278, 626, 635
TspDTI	ATGAA	1 cut(s)	415
TspRI	CASTG	3 cut(s)	36, 288, 626
XapI	RAATTY	2 cut(s)	448, 492
XspI	CTAG	3 cut(s)	128, 321, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.