Rmu_sc0021708.1_g000005

Zinc finger BED domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021708.1
OG0008163
Physical Location & Seq
Reverse (-)
31762 .. 33184
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021708.1_g000005.1.cds

Sequence Viewer

Length: 675 bp
atggaatctatttctattcattctactaattctagtcattcgactcattctccggaagctggcaatgagattgtggctgctgaagcagctgaacaacctggagttgatgaactcactggtgaagcaccatctcccagtccgacggcgatggcggcaactcattcttcgaaacataaagggaagaagaaggttgtgagcagtgtgaagagaaagagggagaagaagatgaaggcagagaggtcatctgtttgggagcacttcaccaaattcgaccagccattagtggagattgttgagggaaaggagatagtagtcggcaatacgaagcgagctcaatgtaagtactgcctgactcatttggcttgtgattctagggaaaatggtactaggcaaagacttgatgtattcaaactacatgctgaaaaagagatattagattgtagcaaagtctgtgttttagatgtgctaacaaggtggaattccaccttcatcatgttggacacagctttagaattgaagaaaacttttgacataatggcagatgtggaagatgcaaaatataggtcatattttgatgaagaggacgatttagatgaagaacttgatgaagctgaaaatattagggcagcaagacactctaggaaaagggtagggccccccgttgaatctaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

224

Amino Acids

25.17

Weight (kDa)

5.89

Isoelectric Point (pI)

54.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 52
AciI CCGC 1 cut(s) 152
AcsI RAATTY 2 cut(s) 266, 478
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 2 cut(s) 344, 385
AfiI CCNNNNNNNGG 1 cut(s) 59
AgsI TTSAA 3 cut(s) 409, 517, 665
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 5 cut(s) 59, 89, 332, 506, 611
AluI AGCT 5 cut(s) 59, 89, 332, 506, 611
Alw21I GWGCWC 2 cut(s) 258, 334
Aor13HI TCCGGA 1 cut(s) 52
AoxI GGCC 1 cut(s) 653
ApaI GGGCCC 1 cut(s) 657
ApeKI GCWGC 3 cut(s) 77, 86, 626
ApoI RAATTY 2 cut(s) 266, 478
ArsI GACNNNNNNTTYG 2 cut(s) 548, 580
AspS9I GGNCC 2 cut(s) 653, 654
AsuHPI GGTGA 2 cut(s) 131, 253
AsuII TTCGAA 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 657
BanII GRGCYC 2 cut(s) 334, 657
Bbv12I GWGCWC 2 cut(s) 258, 334
BbvI GCAGC 3 cut(s) 64, 98, 638
BccI CCATC 2 cut(s) 136, 142
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 99
BfaI CTAG 4 cut(s) 33, 372, 387, 639
BisI GCNGC 4 cut(s) 78, 87, 153, 627
BlsI GCNGC 4 cut(s) 79, 88, 154, 628
BmcAI AGTACT 1 cut(s) 344
Bme1390I CCNGG 1 cut(s) 99
BmgT120I GGNCC 2 cut(s) 653, 654
BmiI GGNNCC 2 cut(s) 655, 656
BmrFI CCNGG 1 cut(s) 99
BmrI ACTGGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 541
BmuI ACTGGG 1 cut(s) 129
BpmI CTGGAG 1 cut(s) 120
Bpu14I TTCGAA 1 cut(s) 167
BsaWI WCCGGW 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 2 cut(s) 121, 135
Bse3DI GCAATG 1 cut(s) 70
BseAI TCCGGA 1 cut(s) 52
BseBI CCWGG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMI GCAATG 1 cut(s) 70
BseNI ACTGG 2 cut(s) 121, 135
BseSI GKGCMC 1 cut(s) 657
BseXI GCAGC 3 cut(s) 64, 98, 638
BshFI GGCC 1 cut(s) 655
BsiHKAI GWGCWC 2 cut(s) 258, 334
BsiSI CCGG 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 59
BsnI GGCC 1 cut(s) 655
Bsp119I TTCGAA 1 cut(s) 167
Bsp120I GGGCCC 1 cut(s) 653
Bsp1286I GDGCHC 3 cut(s) 258, 334, 657
Bsp13I TCCGGA 1 cut(s) 52
BspACI CCGC 1 cut(s) 152
BspANI GGCC 1 cut(s) 655
BspEI TCCGGA 1 cut(s) 52
BspLI GGNNCC 2 cut(s) 655, 656
BspT104I TTCGAA 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 2 cut(s) 121, 135
Bst2UI CCWGG 1 cut(s) 99
Bst6I CTCTTC 2 cut(s) 200, 573
BstBI TTCGAA 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 61, 330
BstMWI GCNNNNNNNGC 3 cut(s) 83, 86, 152
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 419
BstSCI CCNGG 1 cut(s) 97
BstSLI GKGCMC 1 cut(s) 657
BstV1I GCAGC 3 cut(s) 64, 98, 638
BsuRI GGCC 1 cut(s) 655
BtgZI GCGATG 1 cut(s) 161
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 2 cut(s) 114, 205
Cac8I GCNNGC 2 cut(s) 61, 330
Cfr13I GGNCC 2 cut(s) 653, 654
Csp6I GTAC 2 cut(s) 343, 384
CviAII CATG 2 cut(s) 416, 493
CviJI RGCY 9 cut(s) 59, 77, 89, 277, 332, 362, 506, 611, 655
CviKI_1 RGCY 9 cut(s) 59, 77, 89, 277, 332, 362, 506, 611, 655
CviQI GTAC 2 cut(s) 343, 384
Eam1104I CTCTTC 2 cut(s) 200, 573
EarI CTCTTC 2 cut(s) 200, 573
Ecl136II GAGCTC 1 cut(s) 332
Eco24I GRGCYC 2 cut(s) 334, 657
Eco53kI GAGCTC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 102
EcoICRI GAGCTC 1 cut(s) 332
EcoO109I RGGNCCY 2 cut(s) 653, 654
EcoRI GAATTC 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 97
EcoT38I GRGCYC 2 cut(s) 334, 657
FaeI CATG 2 cut(s) 419, 496
FaiI YATR 6 cut(s) 174, 417, 494, 533, 561, 568
FatI CATG 2 cut(s) 415, 492
Fnu4HI GCNGC 4 cut(s) 78, 87, 153, 627
FriOI GRGCYC 2 cut(s) 334, 657
Fsp4HI GCNGC 4 cut(s) 78, 87, 153, 627
FspBI CTAG 4 cut(s) 33, 372, 387, 639
GluI GCNGC 4 cut(s) 78, 87, 153, 627
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 1 cut(s) 655
HapII CCGG 1 cut(s) 53
Hin1II CATG 2 cut(s) 419, 496
HinfI GANTC 5 cut(s) 5, 43, 352, 368, 665
HpaII CCGG 1 cut(s) 53
HphI GGTGA 2 cut(s) 131, 253
Hpy188I TCNGA 1 cut(s) 141
Hpy188III TCNNGA 1 cut(s) 53
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 3 cut(s) 181, 223, 496
HpyCH4V TGCA 1 cut(s) 554
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 86, 152
Hsp92II CATG 2 cut(s) 419, 496
Kpn2I TCCGGA 1 cut(s) 52
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 8 cut(s) 45, 66, 84, 102, 111, 148, 287, 362
Lsp1109I GCAGC 3 cut(s) 64, 98, 638
LweI GCATC 1 cut(s) 541
MaeI CTAG 4 cut(s) 33, 372, 387, 639
MhlI GDGCHC 3 cut(s) 258, 334, 657
MluCI AATT 5 cut(s) 28, 266, 478, 512, 670
MlyI GAGTC 2 cut(s) 37, 346
MmeI TCCRAC 2 cut(s) 164, 477
MnlI CCTC 4 cut(s) 207, 231, 289, 574
MroI TCCGGA 1 cut(s) 52
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 3 cut(s) 83, 86, 152
NlaIII CATG 2 cut(s) 419, 496
NlaIV GGNNCC 2 cut(s) 655, 656
NspI RCATGY 1 cut(s) 419
NspV TTCGAA 1 cut(s) 167
PfeI GAWTC 3 cut(s) 5, 368, 665
PkrI GCNGC 4 cut(s) 79, 88, 154, 628
PleI GAGTC 2 cut(s) 37, 346
PpsI GAGTC 2 cut(s) 37, 346
Psp124BI GAGCTC 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 655, 656
PspOMI GGGCCC 1 cut(s) 653
PspPI GGNCC 2 cut(s) 653, 654
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 2 cut(s) 344, 385
RsaNI GTAC 2 cut(s) 343, 384
SacI GAGCTC 1 cut(s) 334
SatI GCNGC 4 cut(s) 78, 87, 153, 627
Sau96I GGNCC 2 cut(s) 653, 654
ScaI AGTACT 1 cut(s) 344
SchI GAGTC 2 cut(s) 37, 346
ScrFI CCNGG 1 cut(s) 99
SduI GDGCHC 3 cut(s) 258, 334, 657
SfaNI GCATC 1 cut(s) 541
SfuI TTCGAA 1 cut(s) 167
Sse9I AATT 5 cut(s) 28, 266, 478, 512, 670
SsiI CCGC 1 cut(s) 152
SspI AATATT 1 cut(s) 619
SspMI CTAG 4 cut(s) 33, 372, 387, 639
SstI GAGCTC 1 cut(s) 334
StyD4I CCNGG 1 cut(s) 97
TaqI TCGA 3 cut(s) 41, 167, 270
TasI AATT 5 cut(s) 28, 266, 478, 512, 670
TatI WGTACW 1 cut(s) 342
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 3 cut(s) 5, 368, 665
TscAI CASTG 2 cut(s) 121, 205
TseI GCWGC 3 cut(s) 77, 86, 626
TspDTI ATGAA 7 cut(s) 8, 123, 242, 478, 591, 609, 621
TspRI CASTG 2 cut(s) 121, 205
XapI RAATTY 2 cut(s) 266, 478
XceI RCATGY 1 cut(s) 419
XspI CTAG 4 cut(s) 33, 372, 387, 639
ZrmI AGTACT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.