Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008163

Physical Location & Seq

Genomic Coordinates Reverse (-)

35352141 .. 35378386

Gene Structure 26246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00027810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGTGGGAGACTACCGATAAGAGCTTGCGGGATGCTTTCCGGGACTTGAATGCTCTCATGAGTAAAGCTAAAGAGATGGTGATGCTAGCGAGAGAAAATGAGGCGAAACTTTTATCCGGCTCGACTTCTCGGCTGGTGCAGCAGAGGACGAGGAATTGGGTTCCAAACAAGACATGCAAGACGGTTACCGAGTGTTGGTGTCCAAAACCATTGTTGGAGTTGAATTGCAGCTTGGAAGGAATTGGTTCCCGAGTTGGAGAAGAAGAGATGTTCCTCCTGCAGTTCAGTTCGGCAGTTCCTCTTGCAGTCCGAGTTCGGCAGTTCTTCCACCAGTTCCGGTTCCAGAGCAGTCCATTTCCGGTTCCAACAGCCCTTGCTTTAGTGACGTACCTCCTCTCACCGGTGGAGGTTCCCGTCGTCCCTTGCGCCGTATATCATCCGGCTTCGCATCTTAGCACCACCGCCACCTTGACTAGCCAAGCCCTCGACTTCGTCAACTTCGTCGTCCTCAATCTCTCTCTCTATGCGTACTCGGACGGGGAGGAGTCGATCTCCACCACCTCACAACTCAAACCCCCACGGACCCCTCTCTTTCTCGGTTCGGCGTCGATCTCGGTTCGGCTTCGTTCTCACATCGGTTCGGCGTTCCTCCCGCAGTTCAGTTCGGCAGTTCCTCTTGCAGTCCGTTCGGCAGTTCTTCCACCGAGTTCCGGTTCCGAGCAGTCCATTTCCGGTTCCAAGTTCGGTCTCCAAACTTTCGTCGCTCTAGTGGACGATTCTATACCTTTTCTTGATGAATCAGCAACCCGGTTGATGGTTTCGAATTTTGGATCGACCCGGATGAAGTTCCGGATTGGATGTGCGTTGTTTGTTGTGTTGTGCCTTTGTTGTTCGGGAGCGAGTCCCGGTGCAGCAAGAGCAAAAGCTGCGATGCTTTGGGTTCGAGTTGGTTTTCGGGTCGACTTCTTCCGGATTATACGCCAAGGAAGGAACGGTGAGGATGGTCGGGGTGTCCGGAATACTCGTGAAGGAACAAGAGATGTGGGAGACTACCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000814 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010008 GO:0010154 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0032182 GO:0032501 GO:0032502 GO:0032509 GO:0032511 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0036452 GO:0042886 GO:0043130 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0061458 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0090351 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EAP30 Vps36_ESCRT-II

Protein Analysis

352

Amino Acids

38.72

Weight (kDa)

9.33

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008163)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g15310 pycom11g15370
rosa_laevigata	RLG00000006965
rosa_multiflora	Rmu_co8253563.1_g000001 Rmu_sc0003371.1_g000003 Rmu_sc0013146.1_g000005 Rmu_sc0013284.1_g000001 Rmu_sc0021708.1_g000005
rosa_roxburghii	Rroxscaffold_1G00027810 Rroxscaffold_1G00042300 Rroxscaffold_1G00042310 Rroxscaffold_3G00237790 Rroxscaffold_3G00237800 Rroxscaffold_4G00285110 Rroxscaffold_5G00345700 Rroxscaffold_5G00345710 Rroxscaffold_5G00352780 Rroxscaffold_7G00192560 Rroxscaffold_7G00204520
rosa_rugosa	Rorug05G0196200
rosa_samantha	Rh6BG433000 Rh6CG482800 Rh7AG241200 Rh7DG247200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	960
AccIII	TCCGGA	3 cut(s)	849, 969, 1014
AciI	CCGC	3 cut(s)	28, 462, 653
AclWI	GGATC	1 cut(s)	838
AcsI	RAATTY	1 cut(s)	823
AcyI	GRCGYC	1 cut(s)	605
AfaI	GTAC	2 cut(s)	389, 530
AfiI	CCNNNNNNNGG	4 cut(s)	195, 400, 710, 814
AgeI	ACCGGT	1 cut(s)	400
AgsI	TTSAA	2 cut(s)	49, 223
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AluBI	AGCT	4 cut(s)	24, 68, 231, 926
AluI	AGCT	4 cut(s)	24, 68, 231, 926
Alw26I	GTCTC	3 cut(s)	2, 752, 1041
AlwI	GGATC	1 cut(s)	838
Ama87I	CYCGRG	1 cut(s)	249
Aor13HI	TCCGGA	3 cut(s)	849, 969, 1014
ApeKI	GCWGC	4 cut(s)	139, 228, 911, 926
ApoI	RAATTY	1 cut(s)	823
AsiGI	ACCGGT	1 cut(s)	400
Asp700I	GAANNNNTTC	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	1 cut(s)	582
AsuC2I	CCSGG	4 cut(s)	41, 808, 838, 906
AsuHPI	GGTGA	3 cut(s)	91, 390, 1007
AsuII	TTCGAA	1 cut(s)	821
AsuNHI	GCTAGC	1 cut(s)	85
AvaI	CYCGRG	1 cut(s)	249
AvaII	GGWCC	1 cut(s)	582
BauI	CACGAG	1 cut(s)	1023
BbvI	GCAGC	4 cut(s)	151, 240, 913, 923
BccI	CCATC	3 cut(s)	70, 808, 995
BceAI	ACGGC	1 cut(s)	413
BcgI	CGANNNNNNTGC	2 cut(s)	669, 703
BcnI	CCSGG	4 cut(s)	41, 808, 838, 906
BcoDI	GTCTC	3 cut(s)	2, 752, 1041
BfaI	CTAG	3 cut(s)	86, 474, 767
BfmI	CTRYAG	1 cut(s)	278
BisI	GCNGC	4 cut(s)	140, 229, 912, 927
BlsI	GCNGC	4 cut(s)	141, 230, 913, 928
Bme1390I	CCNGG	4 cut(s)	41, 808, 838, 906
Bme18I	GGWCC	1 cut(s)	582
BmeT110I	CYCGRG	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	582
BmiI	GGNNCC	8 cut(s)	162, 247, 341, 363, 411, 584, 715, 736
BmrFI	CCNGG	4 cut(s)	41, 808, 838, 906
BmsI	GCATC	4 cut(s)	22, 72, 457, 921
BmtI	GCTAGC	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	536, 568
Bpu14I	TTCGAA	1 cut(s)	821
BpuMI	CCSGG	4 cut(s)	41, 808, 838, 906
BsaHI	GRCGYC	1 cut(s)	605
BsaI	GGTCTC	1 cut(s)	752
BsaJI	CCNNGG	2 cut(s)	578, 982
BsaWI	WCCGGW	8 cut(s)	336, 358, 400, 710, 731, 849, 969, 1014
Bsc4I	CCNNNNNNNGG	4 cut(s)	195, 400, 710, 814
Bse118I	RCCGGY	1 cut(s)	400
Bse1I	ACTGG	1 cut(s)	331
BseAI	TCCGGA	3 cut(s)	849, 969, 1014
BseDI	CCNNGG	2 cut(s)	578, 982
BseGI	GGATG	5 cut(s)	37, 436, 846, 863, 1006
BseLI	CCNNNNNNNGG	4 cut(s)	195, 400, 710, 814
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	2 cut(s)	383, 557
BseXI	GCAGC	4 cut(s)	151, 240, 913, 923
BsgI	GTGCAG	2 cut(s)	158, 930
BshTI	ACCGGT	1 cut(s)	400
BsiHKCI	CYCGRG	1 cut(s)	249
BslFI	GGGAC	3 cut(s)	56, 404, 888
BslI	CCNNNNNNNGG	4 cut(s)	195, 400, 710, 814
BsmAI	GTCTC	3 cut(s)	2, 752, 1041
BsmFI	GGGAC	3 cut(s)	56, 404, 888
BsmI	GAATGC	1 cut(s)	55
Bso31I	GGTCTC	1 cut(s)	752
BsoBI	CYCGRG	1 cut(s)	249
Bsp119I	TTCGAA	1 cut(s)	821
Bsp13I	TCCGGA	3 cut(s)	849, 969, 1014
Bsp143I	GATC	3 cut(s)	549, 609, 830
BspACI	CCGC	3 cut(s)	28, 462, 653
BspEI	TCCGGA	3 cut(s)	849, 969, 1014
BspHI	TCATGA	1 cut(s)	57
BspLI	GGNNCC	8 cut(s)	162, 247, 341, 363, 411, 584, 715, 736
BspMAI	CTGCAG	1 cut(s)	282
BspOI	GCTAGC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	838
BspT104I	TTCGAA	1 cut(s)	821
BspTNI	GGTCTC	1 cut(s)	752
BsrFI	RCCGGY	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	331
BssAI	RCCGGY	1 cut(s)	400
BssECI	CCNNGG	2 cut(s)	578, 982
BssMI	GATC	3 cut(s)	549, 609, 830
BssNI	GRCGYC	1 cut(s)	605
BssSI	CACGAG	1 cut(s)	1023
BssT1I	CCWWGG	1 cut(s)	982
Bst2BI	CACGAG	1 cut(s)	1023
Bst4CI	ACNGT	2 cut(s)	184, 995
Bst6I	CTCTTC	1 cut(s)	258
BstACI	GRCGYC	1 cut(s)	605
BstAPI	GCANNNNNTGC	1 cut(s)	926
BstBI	TTCGAA	1 cut(s)	821
BstC8I	GCNNGC	2 cut(s)	26, 87
BstDEI	CTNAG	1 cut(s)	452
BstDSI	CCRYGG	1 cut(s)	578
BstEII	GGTNACC	1 cut(s)	184
BstF5I	GGATG	5 cut(s)	37, 436, 846, 863, 1006
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	3 cut(s)	552, 612, 833
BstMAI	GTCTC	3 cut(s)	2, 752, 1041
BstMBI	GATC	3 cut(s)	549, 609, 830
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 917, 926
BstNSI	RCATGY	1 cut(s)	177
BstPI	GGTNACC	1 cut(s)	184
BstSCI	CCNGG	4 cut(s)	39, 806, 836, 904
BstSFI	CTRYAG	1 cut(s)	278
BstV1I	GCAGC	4 cut(s)	151, 240, 913, 923
BtgI	CCRYGG	1 cut(s)	578
BtgZI	GCGATG	1 cut(s)	944
BtsCI	GGATG	5 cut(s)	37, 436, 846, 863, 1006
Cac8I	GCNNGC	2 cut(s)	26, 87
CciI	TCATGA	1 cut(s)	57
CfoI	GCGC	1 cut(s)	428
Cfr10I	RCCGGY	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	582
CseI	GACGC	1 cut(s)	594
Csp6I	GTAC	2 cut(s)	388, 529
CspAI	ACCGGT	1 cut(s)	400
CspCI	CAANNNNNGTGG	2 cut(s)	1023, 1058
CviAII	CATG	2 cut(s)	58, 174
CviQI	GTAC	2 cut(s)	388, 529
DdeI	CTNAG	1 cut(s)	452
DpnI	GATC	3 cut(s)	551, 611, 832
DpnII	GATC	3 cut(s)	549, 609, 830
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	982
Eco31I	GGTCTC	1 cut(s)	752
Eco47I	GGWCC	1 cut(s)	582
Eco88I	CYCGRG	1 cut(s)	249
Eco91I	GGTNACC	1 cut(s)	184
EcoO65I	GGTNACC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	982
ErhI	CCWWGG	1 cut(s)	982
FaeI	CATG	2 cut(s)	61, 177
FaiI	YATR	6 cut(s)	59, 175, 433, 525, 782, 977
FaqI	GGGAC	3 cut(s)	56, 404, 888
FatI	CATG	2 cut(s)	57, 173
FauI	CCCGC	2 cut(s)	21, 660
FblI	GTMKAC	1 cut(s)	960
Fnu4HI	GCNGC	4 cut(s)	140, 229, 912, 927
FokI	GGATG	5 cut(s)	44, 423, 853, 870, 1013
Fsp4HI	GCNGC	4 cut(s)	140, 229, 912, 927
FspBI	CTAG	3 cut(s)	86, 474, 767
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	4 cut(s)	140, 229, 912, 927
HgaI	GACGC	1 cut(s)	594
HhaI	GCGC	1 cut(s)	428
Hin1I	GRCGYC	1 cut(s)	605
Hin1II	CATG	2 cut(s)	61, 177
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HincII	GTYRAC	2 cut(s)	496, 961
HindII	GTYRAC	2 cut(s)	496, 961
HinfI	GANTC	4 cut(s)	545, 776, 797, 901
HphI	GGTGA	3 cut(s)	91, 390, 1007
Hpy166II	GTNNAC	3 cut(s)	496, 772, 961
Hpy188I	TCNGA	3 cut(s)	311, 535, 718
Hpy188III	TCNNGA	9 cut(s)	58, 249, 343, 791, 850, 894, 970, 1015, 1025
Hpy8I	GTNNAC	3 cut(s)	496, 772, 961
Hpy99I	CGWCG	4 cut(s)	419, 506, 610, 764
HpyAV	CCTTC	3 cut(s)	230, 981, 1022
HpyCH4III	ACNGT	2 cut(s)	184, 995
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	7 cut(s)	139, 177, 228, 280, 305, 680, 911
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 917, 926
HpyF3I	CTNAG	1 cut(s)	452
HpySE526I	ACGT	1 cut(s)	386
Hsp92I	GRCGYC	1 cut(s)	605
Hsp92II	CATG	2 cut(s)	61, 177
HspAI	GCGC	1 cut(s)	426
Kpn2I	TCCGGA	3 cut(s)	849, 969, 1014
Kzo9I	GATC	3 cut(s)	549, 609, 830
LmnI	GCTCC	1 cut(s)	896
Lsp1109I	GCAGC	4 cut(s)	151, 240, 913, 923
LweI	GCATC	4 cut(s)	22, 72, 457, 921
MaeI	CTAG	3 cut(s)	86, 474, 767
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	2 cut(s)	184, 382
MalI	GATC	3 cut(s)	551, 611, 832
MboI	GATC	3 cut(s)	549, 609, 830
MboII	GAAGA	5 cut(s)	272, 275, 316, 689, 958
MluCI	AATT	4 cut(s)	154, 223, 240, 823
MlyI	GAGTC	2 cut(s)	554, 910
MmeI	TCCRAC	3 cut(s)	195, 235, 389
MroI	TCCGGA	3 cut(s)	849, 969, 1014
MroXI	GAANNNNTTC	1 cut(s)	244
MspR9I	CCNGG	4 cut(s)	41, 808, 838, 906
Mva1269I	GAATGC	1 cut(s)	55
MwoI	GCNNNNNNNGC	3 cut(s)	139, 917, 926
NciI	CCSGG	4 cut(s)	41, 808, 838, 906
NdeII	GATC	3 cut(s)	549, 609, 830
NheI	GCTAGC	1 cut(s)	85
NlaIII	CATG	2 cut(s)	61, 177
NlaIV	GGNNCC	8 cut(s)	162, 247, 341, 363, 411, 584, 715, 736
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	382
NspI	RCATGY	1 cut(s)	177
NspV	TTCGAA	1 cut(s)	821
PagI	TCATGA	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PctI	GAATGC	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	244
PfeI	GAWTC	2 cut(s)	776, 797
PflFI	GACNNNGTC	1 cut(s)	491
PfoI	TCCNGGA	1 cut(s)	39
PinAI	ACCGGT	1 cut(s)	400
PkrI	GCNGC	4 cut(s)	141, 230, 913, 928
PleI	GAGTC	2 cut(s)	553, 909
PpsI	GAGTC	2 cut(s)	553, 909
PspEI	GGTNACC	1 cut(s)	184
PspN4I	GGNNCC	8 cut(s)	162, 247, 341, 363, 411, 584, 715, 736
PspPI	GGNCC	1 cut(s)	582
PstI	CTGCAG	1 cut(s)	282
PsyI	GACNNNGTC	1 cut(s)	491
RsaI	GTAC	2 cut(s)	389, 530
RsaNI	GTAC	2 cut(s)	388, 529
SalI	GTCGAC	1 cut(s)	959
SatI	GCNGC	4 cut(s)	140, 229, 912, 927
Sau3AI	GATC	3 cut(s)	549, 609, 830
Sau96I	GGNCC	1 cut(s)	582
SchI	GAGTC	2 cut(s)	554, 910
ScrFI	CCNGG	4 cut(s)	41, 808, 838, 906
SfaNI	GCATC	4 cut(s)	22, 72, 457, 921
SfcI	CTRYAG	1 cut(s)	278
SfuI	TTCGAA	1 cut(s)	821
SgrAI	CRCCGGYG	1 cut(s)	400
SinI	GGWCC	1 cut(s)	582
Sse9I	AATT	4 cut(s)	154, 223, 240, 823
SsiI	CCGC	3 cut(s)	28, 462, 653
SspMI	CTAG	3 cut(s)	86, 474, 767
StyD4I	CCNGG	4 cut(s)	39, 806, 836, 904
StyI	CCWWGG	1 cut(s)	982
TaaI	ACNGT	2 cut(s)	184, 995
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	8 cut(s)	122, 486, 548, 608, 821, 833, 943, 960
TaqII	GACCGA	1 cut(s)	734
TasI	AATT	4 cut(s)	154, 223, 240, 823
TfiI	GAWTC	2 cut(s)	776, 797
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	4 cut(s)	139, 228, 911, 926
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	2 cut(s)	810, 857
TspGWI	ACGGA	2 cut(s)	595, 674
Tth111I	GACNNNGTC	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	582
XapI	RAATTY	1 cut(s)	823
XceI	RCATGY	1 cut(s)	177
XmiI	GTMKAC	1 cut(s)	960
XmnI	GAANNNNTTC	1 cut(s)	244
XspI	CTAG	3 cut(s)	86, 474, 767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.