Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008163

Physical Location & Seq

Genomic Coordinates Reverse (-)

16193298 .. 16194258

Gene Structure 961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00345700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGGAACGAGAGGAGATAAAGAAAGATGCGGATGCCGCAATTGGCAATCTCGTTTGGCATGTGATCAATGGGTAGCACTTCCTGTATCTAGTTCACGACCACCAGCTCACTACAAGCATGCTGCTCTAGTAGTTGATGAAAACTTATATATTGTTGGCGGAAAAGAGGAATTTCTCGAATTAGAGGGATTGAGCTGGGTCGGGGGTCTCCGGACAAAAGTAAAACGGATGGCTGCTTTCGCTCTTGGTTCCATTCAATGTGATGATAGTGGAGATCTTTTGGATAAAGTACGGGTGGTACAATCGATACGACTAGCTCCTCTTAAGCAAATATTGCAGGAGCAAATGGGTTCTATTAAATTGGGAGAAGTTGATGTCCCGAGTAATGCTTCGGAAGTTGATAGTGGGTGTCCAAAGCCATTGTTGGAGTTGGATTGCAGCTTGGATGGAGTTGGTTCCCGTGTTGGAGAAGAAGAGATGAGAATGAACACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006869 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0010033 GO:0010876 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033218 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_2 Kelch_3 Kelch_4 Kelch_5 Kelch_6

Protein Analysis

164

Amino Acids

17.94

Weight (kDa)

5.27

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008163)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g15310 pycom11g15370
rosa_laevigata	RLG00000006965
rosa_multiflora	Rmu_co8253563.1_g000001 Rmu_sc0003371.1_g000003 Rmu_sc0013146.1_g000005 Rmu_sc0013284.1_g000001 Rmu_sc0021708.1_g000005
rosa_roxburghii	Rroxscaffold_1G00027810 Rroxscaffold_1G00042300 Rroxscaffold_1G00042310 Rroxscaffold_3G00237790 Rroxscaffold_3G00237800 Rroxscaffold_4G00285110 Rroxscaffold_5G00345700 Rroxscaffold_5G00345710 Rroxscaffold_5G00352780 Rroxscaffold_7G00192560 Rroxscaffold_7G00204520
rosa_rugosa	Rorug05G0196200
rosa_samantha	Rh6BG433000 Rh6CG482800 Rh7AG241200 Rh7DG247200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	210
AciI	CCGC	3 cut(s)	30, 37, 159
AcsI	RAATTY	1 cut(s)	170
AfaI	GTAC	2 cut(s)	291, 300
AflII	CTTAAG	1 cut(s)	323
AgsI	TTSAA	1 cut(s)	257
AluBI	AGCT	4 cut(s)	107, 195, 317, 441
AluI	AGCT	4 cut(s)	107, 195, 317, 441
Alw26I	GTCTC	1 cut(s)	212
Ama87I	CYCGRG	1 cut(s)	379
Aor13HI	TCCGGA	1 cut(s)	210
ApeKI	GCWGC	3 cut(s)	122, 233, 438
ApoI	RAATTY	1 cut(s)	170
AvaI	CYCGRG	1 cut(s)	379
BbvI	GCAGC	3 cut(s)	109, 220, 450
BccI	CCATC	2 cut(s)	223, 440
BclI	TGATCA	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	3 cut(s)	90, 128, 314
BfrI	CTTAAG	1 cut(s)	323
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	4 cut(s)	37, 123, 234, 439
BlsI	GCNGC	4 cut(s)	38, 124, 235, 440
BmeT110I	CYCGRG	1 cut(s)	379
BmiI	GGNNCC	2 cut(s)	250, 457
BmsI	GCATC	2 cut(s)	17, 23
Bsa29I	ATCGAT	1 cut(s)	305
BsaI	GGTCTC	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	210
BseAI	TCCGGA	1 cut(s)	210
BseCI	ATCGAT	1 cut(s)	305
BseGI	GGATG	3 cut(s)	38, 234, 451
BseRI	GAGGAG	2 cut(s)	27, 309
BseXI	GCAGC	3 cut(s)	109, 220, 450
BseYI	CCCAGC	1 cut(s)	195
BshVI	ATCGAT	1 cut(s)	305
BsiHKCI	CYCGRG	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	211
BslFI	GGGAC	1 cut(s)	362
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	362
Bso31I	GGTCTC	1 cut(s)	212
BsoBI	CYCGRG	1 cut(s)	379
Bsp13I	TCCGGA	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	64, 274
BspACI	CCGC	3 cut(s)	30, 37, 159
BspDI	ATCGAT	1 cut(s)	305
BspEI	TCCGGA	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	250, 457
BspTI	CTTAAG	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	212
BssMI	GATC	2 cut(s)	64, 274
Bst6I	CTCTTC	1 cut(s)	468
BstAFI	CTTAAG	1 cut(s)	323
BstAPI	GCANNNNNTGC	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	1 cut(s)	492
BstF5I	GGATG	3 cut(s)	38, 234, 451
BstKTI	GATC	2 cut(s)	67, 277
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	2 cut(s)	64, 274
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 239, 334
BstNSI	RCATGY	2 cut(s)	63, 122
BstV1I	GCAGC	3 cut(s)	109, 220, 450
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
Bsu15I	ATCGAT	1 cut(s)	305
BsuTUI	ATCGAT	1 cut(s)	305
BtsCI	GGATG	3 cut(s)	38, 234, 451
Cac8I	GCNNGC	1 cut(s)	120
ClaI	ATCGAT	1 cut(s)	305
Csp6I	GTAC	2 cut(s)	290, 299
CviAII	CATG	2 cut(s)	60, 119
CviJI	RGCY	6 cut(s)	107, 195, 233, 317, 418, 441
CviKI_1	RGCY	6 cut(s)	107, 195, 233, 317, 418, 441
CviQI	GTAC	2 cut(s)	290, 299
DdeI	CTNAG	1 cut(s)	492
DpnI	GATC	2 cut(s)	66, 276
DpnII	GATC	2 cut(s)	64, 274
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
EciI	GGCGGA	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	212
Eco88I	CYCGRG	1 cut(s)	379
FaeI	CATG	2 cut(s)	63, 122
FaiI	YATR	4 cut(s)	61, 120, 148, 150
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	2 cut(s)	59, 118
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	4 cut(s)	37, 123, 234, 439
FokI	GGATG	3 cut(s)	45, 241, 458
Fsp4HI	GCNGC	4 cut(s)	37, 123, 234, 439
FspBI	CTAG	3 cut(s)	90, 128, 314
GluI	GCNGC	4 cut(s)	37, 123, 234, 439
GsaI	CCCAGC	1 cut(s)	199
HapII	CCGG	1 cut(s)	211
Hin1II	CATG	2 cut(s)	63, 122
HpaII	CCGG	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	1 cut(s)	394
Hpy188III	TCNNGA	4 cut(s)	96, 176, 211, 379
Hpy8I	GTNNAC	1 cut(s)	95
HpyCH4V	TGCA	2 cut(s)	337, 438
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 239, 334
HpyF3I	CTNAG	1 cut(s)	492
Hsp92II	CATG	2 cut(s)	63, 122
Kpn2I	TCCGGA	1 cut(s)	210
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	64, 274
LmnI	GCTCC	2 cut(s)	322, 340
LpnPI	CCDG	5 cut(s)	96, 117, 181, 224, 323
Lsp1109I	GCAGC	3 cut(s)	109, 220, 450
LweI	GCATC	2 cut(s)	17, 23
MaeI	CTAG	3 cut(s)	90, 128, 314
MalI	GATC	2 cut(s)	66, 276
MboI	GATC	2 cut(s)	64, 274
MboII	GAAGA	2 cut(s)	482, 485
MfeI	CAATTG	1 cut(s)	40
MflI	RGATCY	1 cut(s)	274
MluCI	AATT	4 cut(s)	40, 170, 179, 359
MmeI	TCCRAC	3 cut(s)	405, 411, 445
MnlI	CCTC	4 cut(s)	5, 160, 178, 330
MroI	TCCGGA	1 cut(s)	210
MseI	TTAA	2 cut(s)	324, 357
MspCI	CTTAAG	1 cut(s)	323
MspI	CCGG	1 cut(s)	211
MunI	CAATTG	1 cut(s)	40
MwoI	GCNNNNNNNGC	3 cut(s)	36, 239, 334
NdeII	GATC	2 cut(s)	64, 274
NlaIII	CATG	2 cut(s)	63, 122
NlaIV	GGNNCC	2 cut(s)	250, 457
NspI	RCATGY	2 cut(s)	63, 122
PaeI	GCATGC	1 cut(s)	122
PkrI	GCNGC	4 cut(s)	38, 124, 235, 440
PspFI	CCCAGC	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	250, 457
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	2 cut(s)	291, 300
RsaNI	GTAC	2 cut(s)	290, 299
SaqAI	TTAA	2 cut(s)	324, 357
SatI	GCNGC	4 cut(s)	37, 123, 234, 439
Sau3AI	GATC	2 cut(s)	64, 274
SetI	ASST	4 cut(s)	109, 197, 319, 443
SfaNI	GCATC	2 cut(s)	17, 23
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SphI	GCATGC	1 cut(s)	122
Sse9I	AATT	4 cut(s)	40, 170, 179, 359
SsiI	CCGC	3 cut(s)	30, 37, 159
SspI	AATATT	1 cut(s)	333
SspMI	CTAG	3 cut(s)	90, 128, 314
TaqI	TCGA	2 cut(s)	177, 305
TasI	AATT	4 cut(s)	40, 170, 179, 359
TauI	GCSGC	1 cut(s)	39
Tru1I	TTAA	2 cut(s)	324, 357
Tru9I	TTAA	2 cut(s)	324, 357
TseI	GCWGC	3 cut(s)	122, 233, 438
TspDTI	ATGAA	1 cut(s)	153
TspGWI	ACGGA	1 cut(s)	241
Vha464I	CTTAAG	1 cut(s)	323
XapI	RAATTY	1 cut(s)	170
XceI	RCATGY	2 cut(s)	63, 122
XspI	CTAG	3 cut(s)	90, 128, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.