Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008163

Physical Location & Seq

Genomic Coordinates Reverse (-)

16097573 .. 16098481

Gene Structure 909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g15370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTATCTCAATCGCAAGACTGATATGATAATGGCTGGAGGAAGGCATCCCATGAAGATAACTTACAGTGTGGGATTCAAGTCTGATGGGAAGATAACAGCTTTAGAACTTGAGATATTGATAAATGCAGGGATTTCCATAGGCTTTAGTCCAGTATTGCCAAGAACTATTCTGTGGGCACTTAAGAAGTATGACTGGGGTGCTCTGGCTTTCGATATCAAGGTGTGCAAAACAAACACTCCGAGTAGGTCTACTATGCGGGCCCCTGGGGAGGTGCAGGGGTCATTTATCGCTGAAGCTGTAATTGAACATGTTGCATCCACCCTTTCTATAGAAGTATATTATGTGAGAAGCGTTAATCTTCACACATCTCACAGCCTTGATTTGTTTTACGAGCACAGCGCTGGTGAACCTCTGGAGTATAGTTTACCATTGATATGGAACAAGTTTACCATTGAGATGCTAAAAGAATTTAATCGGTGTAATAAATGGAAGAAAAGAGGAATTTCTCGAGTACCGATATTGTGTGAAGTGTTATTGAGGCCAACTCCGGGAAAAGTAAGCATTTTAAGTGATGGGTCTGTTGTTGTTGAAGTTGGAGGAATTGAACTGGGTCAGGGGCTCTGGACGAAGGTAAAACAGGTGACAGCTTTTGCTCTTGGTTCGATTCAATGTGATGGTAGTGGAGATCTTTTGGATAAAGTACGGGTGGTGCAATCGGATACATTGAGCTTAATTCAAGGGGGAATTACTGTCGGGAGCACTACATCTGAGGCAAGCTGTGAGGCAGTTAGACTTTGCTGTAATATTTTGGTTGAGAGGTTAGCTACTCTCAAAGGGAGATTGAAGGAGCAAATGGGCTCTAGTAACTGGGAGACTCTTATTCAGCAGGTATTCTATTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004029 GO:0004031 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009687 GO:0009688 GO:0009850 GO:0009851 GO:0009987 GO:0010293 GO:0010817 GO:0016053 GO:0016106 GO:0016114 GO:0016143 GO:0016491 GO:0016620 GO:0016623 GO:0016903 GO:0018479 GO:0018488 GO:0019748 GO:0019752 GO:0019757 GO:0019760 GO:0019899 GO:0031625 GO:0032787 GO:0036094 GO:0042445 GO:0042446 GO:0043167 GO:0043168 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0048037 GO:0050302 GO:0050660 GO:0050662 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901564 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00380 ko00906 ko01100 ko01110 map00380 map00906 map01100 map01110

Pfam Domains

Protein Families

Ald_Xan_dh_C Ald_Xan_dh_C2 CO_deh_flav_C FAD_binding_5 Fer2 Fer2_2

Protein Analysis

303

Amino Acids

33.35

Weight (kDa)

8.4

Isoelectric Point (pI)

36.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MoCoBD_1	PF02738	1 - 121	1.2e-33	Molybdopterin cofactor-binding domain
MoCoBD_2	PF20256	155 - 282	5.7e-27	Molybdopterin cofactor-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008163)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g15310 pycom11g15370
rosa_laevigata	RLG00000006965
rosa_multiflora	Rmu_co8253563.1_g000001 Rmu_sc0003371.1_g000003 Rmu_sc0013146.1_g000005 Rmu_sc0013284.1_g000001 Rmu_sc0021708.1_g000005
rosa_roxburghii	Rroxscaffold_1G00027810 Rroxscaffold_1G00042300 Rroxscaffold_1G00042310 Rroxscaffold_3G00237790 Rroxscaffold_3G00237800 Rroxscaffold_4G00285110 Rroxscaffold_5G00345700 Rroxscaffold_5G00345710 Rroxscaffold_5G00352780 Rroxscaffold_7G00192560 Rroxscaffold_7G00204520
rosa_rugosa	Rorug05G0196200
rosa_samantha	Rh6BG433000 Rh6CG482800 Rh7AG241200 Rh7DG247200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	880
AccI	GTMKAC	1 cut(s)	251
AciI	CCGC	1 cut(s)	259
AcsI	RAATTY	2 cut(s)	470, 504
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	2 cut(s)	516, 705
AfeI	AGCGCT	1 cut(s)	403
AfiI	CCNNNNNNNGG	2 cut(s)	271, 551
AflII	CTTAAG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	310
AgsI	TTSAA	7 cut(s)	79, 308, 593, 608, 671, 740, 847
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	6 cut(s)	101, 299, 650, 732, 780, 827
AluI	AGCT	6 cut(s)	101, 299, 650, 732, 780, 827
Alw21I	GWGCWC	3 cut(s)	205, 399, 764
Alw26I	GTCTC	1 cut(s)	869
Ama87I	CYCGRG	1 cut(s)	510
Aor51HI	AGCGCT	1 cut(s)	403
AoxI	GGCC	2 cut(s)	261, 542
ApaI	GGGCCC	1 cut(s)	265
ApoI	RAATTY	2 cut(s)	470, 504
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	2 cut(s)	261, 262
AsuC2I	CCSGG	1 cut(s)	552
AsuHPI	GGTGA	2 cut(s)	419, 655
AvaI	CYCGRG	1 cut(s)	510
BaeGI	GKGCMC	2 cut(s)	181, 265
BanII	GRGCYC	3 cut(s)	265, 624, 863
BarI	GAAGNNNNNNTAC	2 cut(s)	47, 79
Bbv12I	GWGCWC	3 cut(s)	205, 399, 764
BccI	CCATC	3 cut(s)	80, 569, 671
BciT130I	CCWGG	1 cut(s)	267
BciVI	GTATCC	1 cut(s)	715
BcnI	CCSGG	1 cut(s)	552
BcoDI	GTCTC	1 cut(s)	869
BfaI	CTAG	1 cut(s)	864
BfmI	CTRYAG	1 cut(s)	330
BfoI	RGCGCY	1 cut(s)	405
BfrI	CTTAAG	1 cut(s)	182
BfuAI	ACCTGC	1 cut(s)	880
BfuI	GTATCC	1 cut(s)	715
BglII	AGATCT	1 cut(s)	688
Bme1390I	CCNGG	2 cut(s)	267, 552
BmeT110I	CYCGRG	1 cut(s)	510
BmgT120I	GGNCC	2 cut(s)	261, 262
BmiI	GGNNCC	2 cut(s)	263, 264
BmrFI	CCNGG	2 cut(s)	267, 552
BmrI	ACTGGG	3 cut(s)	205, 620, 880
BmsI	GCATC	3 cut(s)	55, 326, 450
BmuI	ACTGGG	3 cut(s)	205, 620, 880
BplI	GAGNNNNNCTC	2 cut(s)	532, 564
BpmI	CTGGAG	2 cut(s)	57, 437
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	552
BsaJI	CCNNGG	2 cut(s)	265, 266
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 551
Bse1I	ACTGG	4 cut(s)	152, 200, 615, 875
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	265, 266
BseGI	GGATG	2 cut(s)	46, 317
BseLI	CCNNNNNNNGG	2 cut(s)	271, 551
BseMII	CTCAG	1 cut(s)	762
BseNI	ACTGG	4 cut(s)	152, 200, 615, 875
BseSI	GKGCMC	2 cut(s)	181, 265
BsgI	GTGCAG	1 cut(s)	296
BshFI	GGCC	2 cut(s)	263, 544
BsiHKAI	GWGCWC	3 cut(s)	205, 399, 764
BsiHKCI	CYCGRG	1 cut(s)	510
BsiSI	CCGG	1 cut(s)	551
BslI	CCNNNNNNNGG	2 cut(s)	271, 551
BsmAI	GTCTC	1 cut(s)	869
BsnI	GGCC	2 cut(s)	263, 544
BsoBI	CYCGRG	1 cut(s)	510
Bsp120I	GGGCCC	1 cut(s)	261
Bsp1286I	GDGCHC	7 cut(s)	181, 205, 265, 399, 624, 764, 863
Bsp143I	GATC	1 cut(s)	688
BspACI	CCGC	1 cut(s)	259
BspANI	GGCC	2 cut(s)	263, 544
BspCNI	CTCAG	1 cut(s)	763
BspLI	GGNNCC	2 cut(s)	263, 264
BspMI	ACCTGC	1 cut(s)	880
BspTI	CTTAAG	1 cut(s)	182
BsrI	ACTGG	4 cut(s)	152, 200, 615, 875
BssECI	CCNNGG	2 cut(s)	265, 266
BssMI	GATC	1 cut(s)	688
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	68, 754
BstAFI	CTTAAG	1 cut(s)	182
BstC8I	GCNNGC	2 cut(s)	261, 778
BstDEI	CTNAG	1 cut(s)	771
BstF5I	GGATG	2 cut(s)	46, 317
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	1 cut(s)	691
BstMAI	GTCTC	1 cut(s)	869
BstMBI	GATC	1 cut(s)	688
BstNI	CCWGG	1 cut(s)	267
BstNSI	RCATGY	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	265, 550
BstSFI	CTRYAG	1 cut(s)	330
BstSLI	GKGCMC	2 cut(s)	181, 265
BstX2I	RGATCY	1 cut(s)	688
BstXI	CCANNNNNNTGG	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	688
BsuI	GTATCC	1 cut(s)	715
BsuRI	GGCC	2 cut(s)	263, 544
BtsCI	GGATG	2 cut(s)	46, 317
BtsIMutI	CAGTG	1 cut(s)	73
BveI	ACCTGC	1 cut(s)	880
Cac8I	GCNNGC	2 cut(s)	261, 778
CfoI	GCGC	1 cut(s)	404
Cfr13I	GGNCC	2 cut(s)	261, 262
Csp6I	GTAC	2 cut(s)	515, 704
CviAII	CATG	2 cut(s)	52, 311
CviQI	GTAC	2 cut(s)	515, 704
DdeI	CTNAG	1 cut(s)	771
DpnI	GATC	1 cut(s)	690
DpnII	GATC	1 cut(s)	688
Eco24I	GRGCYC	3 cut(s)	265, 624, 863
Eco32I	GATATC	1 cut(s)	217
Eco47III	AGCGCT	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	265
EcoRV	GATATC	1 cut(s)	217
EcoT38I	GRGCYC	3 cut(s)	265, 624, 863
FaeI	CATG	2 cut(s)	55, 314
FatI	CATG	2 cut(s)	51, 310
FauI	CCCGC	1 cut(s)	252
FblI	GTMKAC	1 cut(s)	251
FokI	GGATG	2 cut(s)	33, 304
FriOI	GRGCYC	3 cut(s)	265, 624, 863
FspBI	CTAG	1 cut(s)	864
GlaI	GCGC	1 cut(s)	403
GsuI	CTGGAG	2 cut(s)	57, 437
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	2 cut(s)	263, 544
HapII	CCGG	1 cut(s)	551
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	2 cut(s)	55, 314
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HinfI	GANTC	3 cut(s)	75, 667, 877
HpaII	CCGG	1 cut(s)	551
HphI	GGTGA	2 cut(s)	419, 655
Hpy166II	GTNNAC	4 cut(s)	252, 410, 428, 450
Hpy188I	TCNGA	4 cut(s)	85, 243, 721, 772
Hpy188III	TCNNGA	4 cut(s)	416, 510, 625, 757
Hpy8I	GTNNAC	4 cut(s)	252, 410, 428, 450
HpyAV	CCTTC	3 cut(s)	36, 625, 841
HpyCH4III	ACNGT	2 cut(s)	68, 754
HpyCH4V	TGCA	5 cut(s)	128, 228, 277, 317, 715
HpyF3I	CTNAG	1 cut(s)	771
Hsp92II	CATG	2 cut(s)	55, 314
HspAI	GCGC	1 cut(s)	402
Kzo9I	GATC	1 cut(s)	688
LmnI	GCTCC	2 cut(s)	759, 850
LweI	GCATC	3 cut(s)	55, 326, 450
MaeI	CTAG	1 cut(s)	864
MaeIII	GTNAC	2 cut(s)	643, 866
MalI	GATC	1 cut(s)	690
MboI	GATC	1 cut(s)	688
MboII	GAAGA	4 cut(s)	67, 103, 353, 505
MflI	RGATCY	1 cut(s)	688
MhlI	GDGCHC	7 cut(s)	181, 205, 265, 399, 624, 764, 863
MluCI	AATT	6 cut(s)	303, 470, 504, 603, 735, 747
MlyI	GAGTC	1 cut(s)	871
MmeI	TCCRAC	1 cut(s)	577
MnlI	CCTC	9 cut(s)	32, 265, 423, 494, 534, 593, 766, 778, 813
MseI	TTAA	5 cut(s)	183, 357, 474, 569, 734
MslI	CAYNNNNRTG	2 cut(s)	436, 458
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	1 cut(s)	551
MspR9I	CCNGG	2 cut(s)	267, 552
MvaI	CCWGG	1 cut(s)	267
NciI	CCSGG	1 cut(s)	552
NdeII	GATC	1 cut(s)	688
NlaIII	CATG	2 cut(s)	55, 314
NlaIV	GGNNCC	2 cut(s)	263, 264
NmuCI	GTSAC	1 cut(s)	643
NspI	RCATGY	1 cut(s)	314
PaeR7I	CTCGAG	1 cut(s)	510
PasI	CCCWGGG	1 cut(s)	266
PciI	ACATGT	1 cut(s)	310
PfeI	GAWTC	2 cut(s)	75, 667
PfoI	TCCNGGA	1 cut(s)	550
PleI	GAGTC	1 cut(s)	871
PpsI	GAGTC	1 cut(s)	871
PscI	ACATGT	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	2 cut(s)	263, 264
PspOMI	GGGCCC	1 cut(s)	261
PspPI	GGNCC	2 cut(s)	261, 262
PsuI	RGATCY	1 cut(s)	688
RsaI	GTAC	2 cut(s)	516, 705
RsaNI	GTAC	2 cut(s)	515, 704
RseI	CAYNNNNRTG	2 cut(s)	436, 458
SaqAI	TTAA	5 cut(s)	183, 357, 474, 569, 734
Sau3AI	GATC	1 cut(s)	688
Sau96I	GGNCC	2 cut(s)	261, 262
SchI	GAGTC	1 cut(s)	871
ScrFI	CCNGG	2 cut(s)	267, 552
SduI	GDGCHC	7 cut(s)	181, 205, 265, 399, 624, 764, 863
SfaNI	GCATC	3 cut(s)	55, 326, 450
SfcI	CTRYAG	1 cut(s)	330
Sfr274I	CTCGAG	1 cut(s)	510
SlaI	CTCGAG	1 cut(s)	510
SmiMI	CAYNNNNRTG	2 cut(s)	436, 458
SmlI	CTYRAG	3 cut(s)	110, 182, 510
SmoI	CTYRAG	3 cut(s)	110, 182, 510
Sse9I	AATT	6 cut(s)	303, 470, 504, 603, 735, 747
SsiI	CCGC	1 cut(s)	259
SspI	AATATT	1 cut(s)	808
SspMI	CTAG	1 cut(s)	864
StyD4I	CCNGG	2 cut(s)	265, 550
TaaI	ACNGT	2 cut(s)	68, 754
TaqI	TCGA	3 cut(s)	213, 511, 665
TasI	AATT	6 cut(s)	303, 470, 504, 603, 735, 747
TfiI	GAWTC	2 cut(s)	75, 667
Tru1I	TTAA	5 cut(s)	183, 357, 474, 569, 734
Tru9I	TTAA	5 cut(s)	183, 357, 474, 569, 734
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	643
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	73
Vha464I	CTTAAG	1 cut(s)	182
XapI	RAATTY	2 cut(s)	470, 504
XceI	RCATGY	1 cut(s)	314
XhoI	CTCGAG	1 cut(s)	510
XmiI	GTMKAC	1 cut(s)	251
XspI	CTAG	1 cut(s)	864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.