pycom11g17310

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0002844
Physical Location & Seq
Forward (+)
19492965 .. 19494077
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 990 bp
ATGGCCTCGAATGAGGTTAGATCCTTGGTTTCAGGACTAATAGATCCTTTGTCTCAAACAAATAAAAGGAATGCTCTGAAGGGTAGAAGAATTCGCCGTTGTAGAAGTGCTCCTCTTTCAGAGTATATAAGGTTAGAGGCAGGCTTTGCCTCAGGTCCACGTACTGAATCCTTTTGTGGAAATATACACCCGAACTTTCTCTTTGTAGCTGCATTCTTGACTGTCTACTTAGGCATAGGAACTTTATGTTTCTACCTCGTCAGGCACCAGCTCAAGGGAGAGAAGACAAATGGATTTCTTGATGCTGTTTATTTCTGTGTTGTGACAATGACCACTGTCGGATACGGAGACCTTGTGCCAAACAGTGTTCTTTCAAAACTACTGGCTTGTGCTTTCGTCTTTTCAGGAATGGCTCTTGTTGGGATGATCTTGAGCAAAGCAGCTGACTATTTGGTAGAGAAGCAGGAATTATTGCTTGTTAAAGCCTTGCATTTGAGTAAAAAAGTTGGGCATTTTGAAATTCTTGAAGATATCGAGACTAACAGTCTGAGGTACAAATGTATTGTGGTCTTCATCTTTCTTTTGCTGCTCATAATTGGTGGCACAATCTTCCTAGCTACTGTTGAGGAATTGAGCCTTGTGGATGCATTCTATTGCGTTTGTTGTACCATAACAACTCTGGGTTATGGAGATAAGAGCTTTTCTACTCAAGCAGGGCGTGTTTTTGCAGTATTCTGGATATTGACAGGTACCATTTGTTTAGCTCAGTTTTACCTCTACATTGCCGACCTAAATGCCCAGAGCAGACAACGGGCGTTAGTAAAGTTGATTCTTACTAGTAGGATGACCAATGTAGATTTGGAGGCAGCTGATCTTGACGATGATGGCTCTGTTCGGGCTGCTGAATTTGTCATATACAAGCTCAAAGAGATGGGGAAGATTAGCCAGGAAGATATTAGACTTGTAATGGAGGAGTTTGAAGATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0003824 GO:0004788 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005887 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006873 GO:0006875 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009108 GO:0009229 GO:0009705 GO:0009987 GO:0010029 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019725 GO:0022607 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022840 GO:0022841 GO:0022842 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030007 GO:0030322 GO:0031004 GO:0031090 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0034641 GO:0042357 GO:0042391 GO:0042592 GO:0042723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046483 GO:0046873 GO:0048580 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051239 GO:0051259 GO:0051260 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065003 GO:0065007 GO:0065008 GO:0071704 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072527 GO:0072528 GO:0090407 GO:0090533 GO:0098533 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099094 GO:1900140 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902495 GO:1904949 GO:1990351 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

330

Amino Acids

36.65

Weight (kDa)

6.89

Isoelectric Point (pI)

30.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 73 - 152 2.1e-18 Ion channel
Ion_trans_2 PF07885 192 - 264 8.3e-16 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 749
AccB1I GGYRCC 2 cut(s) 264, 749
AccI GTMKAC 1 cut(s) 225
AclWI GGATC 2 cut(s) 15, 38
AcsI RAATTY 3 cut(s) 90, 519, 905
AcuI CTGAAG 1 cut(s) 98
AfaI GTAC 4 cut(s) 163, 554, 667, 751
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 4 cut(s) 375, 518, 527, 980
AhdI GACNNNNNGTC 1 cut(s) 543
AhlI ACTAGT 1 cut(s) 836
AjnI CCWGG 1 cut(s) 945
AluBI AGCT 8 cut(s) 209, 271, 443, 617, 699, 764, 869, 922
AluI AGCT 8 cut(s) 209, 271, 443, 617, 699, 764, 869, 922
Alw21I GWGCWC 1 cut(s) 112
Alw26I GTCTC 3 cut(s) 57, 342, 530
AlwI GGATC 2 cut(s) 15, 38
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 5 cut(s) 209, 440, 586, 866, 899
ApoI RAATTY 3 cut(s) 90, 519, 905
Asp718I GGTACC 1 cut(s) 749
AspS9I GGNCC 1 cut(s) 155
AvaII GGWCC 1 cut(s) 155
AxyI CCTNAGG 1 cut(s) 151
BaeI ACNNNNGTAYC 2 cut(s) 544, 577
BanI GGYRCC 2 cut(s) 264, 749
BbsI GAAGAC 2 cut(s) 290, 562
Bbv12I GWGCWC 1 cut(s) 112
BbvI GCAGC 5 cut(s) 196, 452, 573, 878, 886
BccI CCATC 2 cut(s) 878, 925
BceAI ACGGC 1 cut(s) 81
BcgI CGANNNNNNTGC 2 cut(s) 776, 810
BciT130I CCWGG 1 cut(s) 947
BciVI GTATCC 1 cut(s) 335
BcoDI GTCTC 3 cut(s) 57, 342, 530
BcuI ACTAGT 1 cut(s) 836
BfaI CTAG 2 cut(s) 614, 837
BfuI GTATCC 1 cut(s) 335
BisI GCNGC 5 cut(s) 210, 441, 587, 867, 900
BlsI GCNGC 5 cut(s) 211, 442, 588, 868, 901
Bme1390I CCNGG 1 cut(s) 947
Bme18I GGWCC 1 cut(s) 155
BmeRI GACNNNNNGTC 1 cut(s) 543
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 2 cut(s) 266, 751
BmrFI CCNGG 1 cut(s) 947
BmsI GCATC 2 cut(s) 292, 634
BoxI GACNNNNGTC 1 cut(s) 335
BpiI GAAGAC 2 cut(s) 290, 562
BpuEI CTTGAG 3 cut(s) 257, 451, 693
BsaAI YACGTR 1 cut(s) 161
BsaI GGTCTC 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 387
Bse21I CCTNAGG 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 780
BseBI CCWGG 1 cut(s) 947
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 3 cut(s) 429, 649, 849
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMI GCAATG 1 cut(s) 780
BseMII CTCAG 3 cut(s) 165, 539, 779
BseNI ACTGG 1 cut(s) 387
BseRI GAGGAG 2 cut(s) 102, 986
BseXI GCAGC 5 cut(s) 196, 452, 573, 878, 886
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 2 cut(s) 264, 749
BsiHKAI GWGCWC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 3 cut(s) 57, 342, 530
BsmI GAATGC 3 cut(s) 76, 212, 647
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 342
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 5 cut(s) 20, 43, 426, 871, 982
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 164, 540, 778
BspLI GGNNCC 2 cut(s) 266, 751
BspPI GGATC 2 cut(s) 15, 38
BspT107I GGYRCC 2 cut(s) 264, 749
BspTNI GGTCTC 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 780
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 5 cut(s) 20, 43, 426, 871, 982
BssT1I CCWWGG 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 947
Bst4CI ACNGT 5 cut(s) 223, 337, 365, 545, 622
BstAPI GCANNNNNTGC 1 cut(s) 146
BstBAI YACGTR 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 4 cut(s) 151, 229, 548, 765
BstF5I GGATG 3 cut(s) 429, 649, 849
BstKTI GATC 5 cut(s) 23, 46, 429, 874, 985
BstMAI GTCTC 3 cut(s) 57, 342, 530
BstMBI GATC 5 cut(s) 20, 43, 426, 871, 982
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNI CCWGG 1 cut(s) 947
BstPAI GACNNNNGTC 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 945
BstV1I GCAGC 5 cut(s) 196, 452, 573, 878, 886
BstV2I GAAGAC 2 cut(s) 290, 562
BstX2I RGATCY 2 cut(s) 20, 43
BstYI RGATCY 2 cut(s) 20, 43
Bsu36I CCTNAGG 1 cut(s) 151
BsuI GTATCC 1 cut(s) 335
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 3 cut(s) 429, 649, 849
BtsIMutI CAGTG 2 cut(s) 333, 370
Cac8I GCNNGC 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 155
Csp6I GTAC 4 cut(s) 162, 553, 666, 750
CviQI GTAC 4 cut(s) 162, 553, 666, 750
DdeI CTNAG 4 cut(s) 151, 229, 548, 765
DpnI GATC 5 cut(s) 22, 45, 428, 873, 984
DpnII GATC 5 cut(s) 20, 43, 426, 871, 982
DriI GACNNNNNGTC 1 cut(s) 543
Eam1105I GACNNNNNGTC 1 cut(s) 543
Eco130I CCWWGG 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 342
Eco32I GATATC 1 cut(s) 532
Eco47I GGWCC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 98
Eco81I CCTNAGG 1 cut(s) 151
EcoRI GAATTC 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 945
EcoRV GATATC 1 cut(s) 532
EcoT14I CCWWGG 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 649
ErhI CCWWGG 1 cut(s) 24
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 5 cut(s) 210, 441, 587, 867, 900
FokI GGATG 3 cut(s) 436, 656, 856
Fsp4HI GCNGC 5 cut(s) 210, 441, 587, 867, 900
FspBI CTAG 2 cut(s) 614, 837
GluI GCNGC 5 cut(s) 210, 441, 587, 867, 900
HaeIII GGCC 1 cut(s) 5
HinfI GANTC 2 cut(s) 167, 829
Hpy166II GTNNAC 2 cut(s) 158, 226
Hpy188I TCNGA 4 cut(s) 78, 121, 341, 549
Hpy188III TCNNGA 9 cut(s) 33, 217, 299, 405, 430, 524, 535, 736, 875
Hpy8I GTNNAC 2 cut(s) 158, 226
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 5 cut(s) 223, 337, 365, 545, 622
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 4 cut(s) 212, 490, 647, 728
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 4 cut(s) 151, 229, 548, 765
HpySE526I ACGT 1 cut(s) 160
KpnI GGTACC 1 cut(s) 753
Kzo9I GATC 5 cut(s) 20, 43, 426, 871, 982
LmnI GCTCC 1 cut(s) 115
Lsp1109I GCAGC 5 cut(s) 196, 452, 573, 878, 886
LweI GCATC 2 cut(s) 292, 634
MaeI CTAG 2 cut(s) 614, 837
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 322
MalI GATC 5 cut(s) 22, 45, 428, 873, 984
MboI GATC 5 cut(s) 20, 43, 426, 871, 982
MboII GAAGA 7 cut(s) 99, 295, 539, 562, 601, 949, 962
MflI RGATCY 2 cut(s) 20, 43
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 6 cut(s) 90, 467, 519, 594, 629, 905
MmeI TCCRAC 1 cut(s) 319
Mph1103I ATGCAT 1 cut(s) 649
MseI TTAA 1 cut(s) 480
MspA1I CMGCKG 2 cut(s) 443, 869
MspR9I CCNGG 1 cut(s) 947
Mva1269I GAATGC 3 cut(s) 76, 212, 647
MvaI CCWGG 1 cut(s) 947
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeII GATC 5 cut(s) 20, 43, 426, 871, 982
NlaIV GGNNCC 2 cut(s) 266, 751
NmuCI GTSAC 1 cut(s) 322
NsiI ATGCAT 1 cut(s) 649
PctI GAATGC 3 cut(s) 76, 212, 647
PfeI GAWTC 2 cut(s) 167, 829
PkrI GCNGC 5 cut(s) 211, 442, 588, 868, 901
Ppu21I YACGTR 1 cut(s) 161
PshAI GACNNNNGTC 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 945
PspGI CCWGG 1 cut(s) 945
PspN4I GGNNCC 2 cut(s) 266, 751
PspPI GGNCC 1 cut(s) 155
PsuI RGATCY 2 cut(s) 20, 43
PvuII CAGCTG 2 cut(s) 443, 869
RsaI GTAC 4 cut(s) 163, 554, 667, 751
RsaNI GTAC 4 cut(s) 162, 553, 666, 750
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 5 cut(s) 210, 441, 587, 867, 900
Sau3AI GATC 5 cut(s) 20, 43, 426, 871, 982
Sau96I GGNCC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 947
SduI GDGCHC 1 cut(s) 112
SfaNI GCATC 2 cut(s) 292, 634
SinI GGWCC 1 cut(s) 155
SmlI CTYRAG 3 cut(s) 272, 430, 708
SmoI CTYRAG 3 cut(s) 272, 430, 708
SpeI ACTAGT 1 cut(s) 836
Sse9I AATT 6 cut(s) 90, 467, 519, 594, 629, 905
SspMI CTAG 2 cut(s) 614, 837
StyD4I CCNGG 1 cut(s) 945
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 5 cut(s) 223, 337, 365, 545, 622
TaiI ACGT 1 cut(s) 163
TaqI TCGA 2 cut(s) 8, 534
TasI AATT 6 cut(s) 90, 467, 519, 594, 629, 905
TfiI GAWTC 2 cut(s) 167, 829
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 2 cut(s) 340, 370
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 5 cut(s) 209, 440, 586, 866, 899
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 562
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 2 cut(s) 340, 370
VpaK11BI GGWCC 1 cut(s) 155
XapI RAATTY 3 cut(s) 90, 519, 905
XcmI CCANNNNNNNNNTGG 2 cut(s) 676, 856
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 2 cut(s) 614, 837
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.