Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004405

Physical Location & Seq

Genomic Coordinates Forward (+)

23310751 .. 23314412

Gene Structure 3662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGAAACGAGGGTACTCCGAATCGTCCTCCACCTCTCTCGGGCCTCCCCAATCGAGATTCAAACACAACCCAGAAGGTGATTCAGAGTTCTTGGAGGATGAAACCACAAAAAAATTCGCACGTAAAGTGGCCGATCATTACAGTGCAAGGACGAATCAAACTCTAGAAGAACGAGAAGCGAGTCCAATCATCCATTTAAAGAAGCTTAACAATTGGATTAAGAGTGTTTTAATCCAGCTATATGCTCATAGAGGAGATGCTGTCCTGGATCTTGCATGTGGCAAGGGAGGTGATCTCATCAAATGGGACAAGGCTAAAATTGCGTATTATGTTGGAATTGATATCGCTGAAGGCTCAATAGAAGATTGTCGTACCCGTTACAATGGCGATGCCGACCATCATCAGCGTCGTAAAAAGTTTACATTTCCTGCGCATCTTATGTGTGGAGATTGCTATGAGGTTCGCCTGGATAAAGTCCTGGCTGACGATGCCCCCTTTGATGTTGTCAGTTGCCAGTTTGCCTTGCATTATTCCTGGTCTACTGAGGCACGTGCGCGGCGAGCCTTGGCTAATGTATCGGCTTTACTGCGACCTGGCGGTACTTTTATTGGAACAATGCCCGATGCGAATGTGATTATCAAAAAGCTTAGAGAAGCTGAAGGATTGGTCTTTGGTAATAGCGTCTACTGGATACGTTTTGATGATGACTTTTCTGAAAAGAAATTCAAGTCTTCGAGCCCCTTTGGTATCAAGTACAAGTTTCACCTGGAGGATGCTGTTGATTGCCCGGAATGGATTGTCCCCTTTCATGTTTTCAAATCGCTGGTTGAAGAGTATGATATGGAGCTAGTTTTCATGAAGAACAACCACGAATTTGTGCATGAGTATATGAAAAAACCAGAATTTGTGGAGTTAATGCGGAGGCTTGGTGCATTAGGTGATGGTAACCAAGATCAAAGCACACTATCGAAAGACGAATGGGAAGTAGCTTATCTCTATTTGGCATTTGTCTTGAGGAAGGTGAGCGAGCGGGAACCTGATCGGACACAAGTAAACGGTAGAAGAGACAAAGGGAAGATGAACATATTAAAGGAGGACGTCATGTACGTAAGTAATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

374

Amino Acids

42.95

Weight (kDa)

6.34

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	32 - 341	8.5e-129	mRNA (guanine-N(7))-methyltransferase domain
Methyltransf_31	PF13847	83 - 209	1.5e-09	Methyltransferase domain
Methyltransf_23	PF13489	83 - 218	7.3e-06	Methyltransferase domain
Methyltransf_25	PF13649	88 - 200	2.5e-11	Methyltransferase domain
Methyltransf_12	PF08242	89 - 202	2.3e-11	Methyltransferase domain
Methyltransf_11	PF08241	89 - 203	6.1e-10	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20650 AT3G20650 AT3G20650
fragaria_vesca	FvH4_3g21511 FvH4_3g21511 FvH4_3g21511 FvH4_6g24821
malus_domestica	MD03G1215400.v1.1 MD11G1013800.v1.1 MD11G1230000.v1.1
prunus_persica	Prupe.4G197400_v2.0.a1
pyrus_communis	pycom03g16380 pycom11g20380
rosa_chinensis	RchiOBHm_Chr1g0332461 RchiOBHm_Chr5g0036961
rosa_laevigata	RLG00000019767 RLG00000029593 RLG00000029668 RLG00000033739
rosa_multiflora	Rmu_sc0000574.1_g000061 Rmu_sc0006147.1_g000007 Rmu_sc0007663.1_g000020 Rmu_sc0024051.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043990 Rroxscaffold_2G00105880
rosa_rugosa	Rorug01G0101300 Rorug05G0159400
rosa_samantha	Rh1DG129900 Rh5DG261500
rosa_wichuraiana	Rw1G010160 Rw1G015570 Rw5G023160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1101
Acc16I	TGCGCA	1 cut(s)	432
AccBSI	CCGCTC	1 cut(s)	1030
AccI	GTMKAC	2 cut(s)	539, 684
AccII	CGCG	1 cut(s)	556
AciI	CCGC	4 cut(s)	556, 597, 919, 1030
AclWI	GGATC	1 cut(s)	276
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	4 cut(s)	113, 722, 872, 902
AcuI	CTGAAG	2 cut(s)	369, 678
AcvI	CACGTG	1 cut(s)	551
AcyI	GRCGYC	1 cut(s)	1098
AfaI	GTAC	5 cut(s)	14, 373, 601, 755, 1106
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	4 cut(s)	61, 727, 817, 830
AjnI	CCWGG	6 cut(s)	264, 465, 477, 533, 592, 765
AluBI	AGCT	6 cut(s)	205, 238, 646, 656, 847, 989
AluI	AGCT	6 cut(s)	205, 238, 646, 656, 847, 989
Alw26I	GTCTC	1 cut(s)	1059
AlwI	GGATC	1 cut(s)	276
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	2 cut(s)	41, 129
ApoI	RAATTY	4 cut(s)	113, 722, 872, 902
AspLEI	GCGC	2 cut(s)	433, 556
AspS9I	GGNCC	1 cut(s)	41
AsuC2I	CCSGG	1 cut(s)	788
AsuHPI	GGTGA	5 cut(s)	89, 302, 755, 950, 1033
AvaI	CYCGRG	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	740
BbrPI	CACGTG	1 cut(s)	551
BbsI	GAAGAC	1 cut(s)	723
BccI	CCATC	2 cut(s)	405, 935
BciT130I	CCWGG	6 cut(s)	266, 467, 479, 535, 594, 767
BciVI	GTATCC	1 cut(s)	684
BcnI	CCSGG	1 cut(s)	788
BcoDI	GTCTC	1 cut(s)	1059
BfaI	CTAG	3 cut(s)	164, 848, 1120
BfuI	GTATCC	1 cut(s)	684
BisI	GCNGC	1 cut(s)	557
BlsI	GCNGC	1 cut(s)	558
Bme1390I	CCNGG	7 cut(s)	266, 467, 479, 535, 594, 767, 788
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	1035
BmrFI	CCNGG	7 cut(s)	266, 467, 479, 535, 594, 767, 788
BmsI	GCATC	6 cut(s)	247, 379, 442, 478, 613, 763
BpiI	GAAGAC	1 cut(s)	723
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BpmI	CTGGAG	1 cut(s)	788
BpuEI	CTTGAG	1 cut(s)	1033
BpuMI	CCSGG	1 cut(s)	788
BsaAI	YACGTR	3 cut(s)	122, 551, 1108
BsaHI	GRCGYC	1 cut(s)	1098
BsaJI	CCNNGG	1 cut(s)	564
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 913, 943
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	2 cut(s)	514, 692
BseBI	CCWGG	6 cut(s)	266, 467, 479, 535, 594, 767
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	3 cut(s)	103, 189, 778
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	2 cut(s)	514, 692
BseRI	GAGGAG	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	556
BshFI	GGCC	2 cut(s)	43, 131
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	788
BslFI	GGGAC	2 cut(s)	320, 785
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	1059
BsmFI	GGGAC	2 cut(s)	320, 785
BsnI	GGCC	2 cut(s)	43, 131
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	740
Bsp143I	GATC	5 cut(s)	133, 268, 292, 952, 1039
BspACI	CCGC	4 cut(s)	556, 597, 919, 1030
BspANI	GGCC	2 cut(s)	43, 131
BspCNI	CTCAG	1 cut(s)	535
BspFNI	CGCG	1 cut(s)	556
BspHI	TCATGA	1 cut(s)	855
BspLI	GGNNCC	1 cut(s)	1035
BspPI	GGATC	1 cut(s)	276
BsrBI	CCGCTC	1 cut(s)	1030
BsrI	ACTGG	2 cut(s)	514, 692
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	5 cut(s)	133, 268, 292, 952, 1039
BssNI	GRCGYC	1 cut(s)	1098
BssT1I	CCWWGG	1 cut(s)	564
Bst2UI	CCWGG	6 cut(s)	266, 467, 479, 535, 594, 767
Bst4CI	ACNGT	2 cut(s)	143, 1058
Bst6I	CTCTTC	2 cut(s)	825, 1057
BstACI	GRCGYC	1 cut(s)	1098
BstBAI	YACGTR	3 cut(s)	122, 551, 1108
BstC8I	GCNNGC	2 cut(s)	561, 1028
BstDEI	CTNAG	2 cut(s)	543, 647
BstEII	GGTNACC	1 cut(s)	944
BstF5I	GGATG	3 cut(s)	103, 189, 778
BstFNI	CGCG	1 cut(s)	556
BstHHI	GCGC	2 cut(s)	433, 556
BstKTI	GATC	5 cut(s)	136, 271, 295, 955, 1042
BstMAI	GTCTC	1 cut(s)	1059
BstMBI	GATC	5 cut(s)	133, 268, 292, 952, 1039
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 488, 560
BstNI	CCWGG	6 cut(s)	266, 467, 479, 535, 594, 767
BstNSI	RCATGY	1 cut(s)	279
BstPI	GGTNACC	1 cut(s)	944
BstSCI	CCNGG	7 cut(s)	264, 465, 477, 533, 592, 765, 786
BstSNI	TACGTA	1 cut(s)	1108
BstUI	CGCG	1 cut(s)	556
BstV2I	GAAGAC	1 cut(s)	723
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuI	GTATCC	1 cut(s)	684
BsuRI	GGCC	2 cut(s)	43, 131
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	3 cut(s)	103, 189, 778
BtsIMutI	CAGTG	1 cut(s)	148
Cac8I	GCNNGC	2 cut(s)	561, 1028
CciI	TCATGA	1 cut(s)	855
CfoI	GCGC	2 cut(s)	433, 556
Cfr13I	GGNCC	1 cut(s)	41
CseI	GACGC	2 cut(s)	395, 670
Csp6I	GTAC	5 cut(s)	13, 372, 600, 754, 1105
CviAII	CATG	5 cut(s)	276, 809, 856, 881, 1102
CviQI	GTAC	5 cut(s)	13, 372, 600, 754, 1105
DdeI	CTNAG	2 cut(s)	543, 647
DpnI	GATC	5 cut(s)	135, 270, 294, 954, 1041
DpnII	GATC	5 cut(s)	133, 268, 292, 952, 1039
DraI	TTTAAA	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	2 cut(s)	825, 1057
EarI	CTCTTC	2 cut(s)	825, 1057
Eco105I	TACGTA	1 cut(s)	1108
Eco130I	CCWWGG	1 cut(s)	564
Eco24I	GRGCYC	1 cut(s)	740
Eco32I	GATATC	1 cut(s)	343
Eco57I	CTGAAG	2 cut(s)	369, 678
Eco72I	CACGTG	1 cut(s)	551
Eco88I	CYCGRG	1 cut(s)	38
Eco91I	GGTNACC	1 cut(s)	944
EcoO65I	GGTNACC	1 cut(s)	944
EcoRII	CCWGG	6 cut(s)	264, 465, 477, 533, 592, 765
EcoRV	GATATC	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	564
EcoT38I	GRGCYC	1 cut(s)	740
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	5 cut(s)	279, 812, 859, 884, 1105
FaqI	GGGAC	2 cut(s)	320, 785
FatI	CATG	5 cut(s)	275, 808, 855, 880, 1101
FauI	CCCGC	1 cut(s)	1023
FblI	GTMKAC	2 cut(s)	539, 684
Fnu4HI	GCNGC	1 cut(s)	557
FokI	GGATG	3 cut(s)	110, 176, 785
FriOI	GRGCYC	1 cut(s)	740
Fsp4HI	GCNGC	1 cut(s)	557
FspBI	CTAG	3 cut(s)	164, 848, 1120
FspI	TGCGCA	1 cut(s)	432
GlaI	GCGC	2 cut(s)	432, 555
GluI	GCNGC	1 cut(s)	557
GsuI	CTGGAG	1 cut(s)	788
HaeIII	GGCC	2 cut(s)	43, 131
HapII	CCGG	1 cut(s)	788
HgaI	GACGC	2 cut(s)	395, 670
HhaI	GCGC	2 cut(s)	433, 556
Hin1I	GRCGYC	1 cut(s)	1098
Hin1II	CATG	5 cut(s)	279, 812, 859, 884, 1105
Hin6I	GCGC	2 cut(s)	431, 554
HinP1I	GCGC	2 cut(s)	431, 554
HindIII	AAGCTT	2 cut(s)	203, 644
HinfI	GANTC	5 cut(s)	20, 57, 80, 154, 181
HpaII	CCGG	1 cut(s)	788
HphI	GGTGA	5 cut(s)	89, 302, 755, 950, 1033
Hpy166II	GTNNAC	4 cut(s)	420, 540, 685, 1054
Hpy188I	TCNGA	4 cut(s)	19, 85, 715, 1044
Hpy188III	TCNNGA	4 cut(s)	54, 164, 856, 1012
Hpy8I	GTNNAC	4 cut(s)	420, 540, 685, 1054
Hpy99I	CGWCG	1 cut(s)	411
HpyAV	CCTTC	4 cut(s)	68, 344, 653, 1012
HpyCH4III	ACNGT	2 cut(s)	143, 1058
HpyCH4IV	ACGT	5 cut(s)	121, 550, 694, 1098, 1107
HpyCH4V	TGCA	5 cut(s)	146, 275, 526, 880, 932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 488, 560
HpyF3I	CTNAG	2 cut(s)	543, 647
HpySE526I	ACGT	5 cut(s)	121, 550, 694, 1098, 1107
Hsp92I	GRCGYC	1 cut(s)	1098
Hsp92II	CATG	5 cut(s)	279, 812, 859, 884, 1105
HspAI	GCGC	2 cut(s)	431, 554
Kzo9I	GATC	5 cut(s)	133, 268, 292, 952, 1039
LmnI	GCTCC	1 cut(s)	844
LweI	GCATC	6 cut(s)	247, 379, 442, 478, 613, 763
MaeI	CTAG	3 cut(s)	164, 848, 1120
MaeII	ACGT	5 cut(s)	121, 550, 694, 1098, 1107
MaeIII	GTNAC	2 cut(s)	377, 944
MalI	GATC	5 cut(s)	135, 270, 294, 954, 1041
MbiI	CCGCTC	1 cut(s)	1030
MboI	GATC	5 cut(s)	133, 268, 292, 952, 1039
MboII	GAAGA	7 cut(s)	179, 374, 723, 842, 871, 1074, 1087
MfeI	CAATTG	1 cut(s)	211
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	740
MluCI	AATT	7 cut(s)	113, 211, 318, 336, 722, 872, 902
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	313
MseI	TTAA	6 cut(s)	197, 207, 219, 230, 914, 1088
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	1 cut(s)	788
MspR9I	CCNGG	7 cut(s)	266, 467, 479, 535, 594, 767, 788
MunI	CAATTG	1 cut(s)	211
MvaI	CCWGG	6 cut(s)	266, 467, 479, 535, 594, 767
MvnI	CGCG	1 cut(s)	556
MwoI	GCNNNNNNNGC	3 cut(s)	320, 488, 560
NciI	CCSGG	1 cut(s)	788
NdeII	GATC	5 cut(s)	133, 268, 292, 952, 1039
NlaIII	CATG	5 cut(s)	279, 812, 859, 884, 1105
NlaIV	GGNNCC	1 cut(s)	1035
NsbI	TGCGCA	1 cut(s)	432
NspI	RCATGY	1 cut(s)	279
PagI	TCATGA	1 cut(s)	855
PcsI	WCGNNNNNNNCGW	2 cut(s)	556, 1104
PfeI	GAWTC	4 cut(s)	20, 57, 80, 154
PfoI	TCCNGGA	1 cut(s)	264
PkrI	GCNGC	1 cut(s)	558
PleI	GAGTC	1 cut(s)	189
PmaCI	CACGTG	1 cut(s)	551
PmlI	CACGTG	1 cut(s)	551
PpsI	GAGTC	1 cut(s)	189
Ppu21I	YACGTR	3 cut(s)	122, 551, 1108
Psp6I	CCWGG	6 cut(s)	264, 465, 477, 533, 592, 765
PspCI	CACGTG	1 cut(s)	551
PspEI	GGTNACC	1 cut(s)	944
PspGI	CCWGG	6 cut(s)	264, 465, 477, 533, 592, 765
PspN4I	GGNNCC	1 cut(s)	1035
PspPI	GGNCC	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	5 cut(s)	14, 373, 601, 755, 1106
RsaNI	GTAC	5 cut(s)	13, 372, 600, 754, 1105
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	6 cut(s)	197, 207, 219, 230, 914, 1088
SatI	GCNGC	1 cut(s)	557
Sau3AI	GATC	5 cut(s)	133, 268, 292, 952, 1039
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	7 cut(s)	266, 467, 479, 535, 594, 767, 788
SduI	GDGCHC	1 cut(s)	740
SfaNI	GCATC	6 cut(s)	247, 379, 442, 478, 613, 763
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	1012
SmoI	CTYRAG	1 cut(s)	1012
SnaBI	TACGTA	1 cut(s)	1108
Sse9I	AATT	7 cut(s)	113, 211, 318, 336, 722, 872, 902
SsiI	CCGC	4 cut(s)	556, 597, 919, 1030
SspMI	CTAG	3 cut(s)	164, 848, 1120
StyD4I	CCNGG	7 cut(s)	264, 465, 477, 533, 592, 765, 786
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	2 cut(s)	143, 1058
TaiI	ACGT	5 cut(s)	124, 553, 697, 1101, 1110
TaqI	TCGA	3 cut(s)	53, 734, 968
TasI	AATT	7 cut(s)	113, 211, 318, 336, 722, 872, 902
TatI	WGTACW	1 cut(s)	753
TauI	GCSGC	1 cut(s)	559
TfiI	GAWTC	4 cut(s)	20, 57, 80, 154
Tru1I	TTAA	6 cut(s)	197, 207, 219, 230, 914, 1088
Tru9I	TTAA	6 cut(s)	197, 207, 219, 230, 914, 1088
TscAI	CASTG	1 cut(s)	148
TspDTI	ATGAA	7 cut(s)	17, 114, 797, 844, 872, 905, 1094
TspRI	CASTG	1 cut(s)	148
XapI	RAATTY	4 cut(s)	113, 722, 872, 902
XbaI	TCTAGA	1 cut(s)	163
XceI	RCATGY	1 cut(s)	279
XmiI	GTMKAC	2 cut(s)	539, 684
XspI	CTAG	3 cut(s)	164, 848, 1120
ZraI	GACGTC	1 cut(s)	1099

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.