Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004317

Physical Location & Seq

Genomic Coordinates Reverse (-)

29163298 .. 29164183

Gene Structure 886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAGTCCAAGCTTTCTGCTTCCGAGGAGGAGGCTCAGCACCTCTTAAACGCACCAGGTTCTTCCTTTTTTTCTTCGCAGTACTCTGATATCGATGATTTATCGAAAACCCATGTTTCCCAAATTGATAACGACGAGAAATTTAGCGGGGTTGGTGGCCGTGGTGACGGTGGCGGGTCGGAGACTGAGGAGGGGTTTGGGAGTGGGGAGGAGGATTTTGATTCCGAGAGGGCGTTTGTGAGAGGCGCAGTGGTTGGGGGTGGTGCAGGAGAGGAGGAGGAGTCCGGTGTTAAGTTTGTTAACTCGTCGGAATTCTTCTATCCGACGAGTAGTCTGCGGCCGGTTGCCAAGGTTTCGGTGGATGACGAGGAGGAGGAGGAGGAGGAGGAGGATACCAGGGAAGAAGGGGTTAGGGATTTGAAGAGTTTAGAGGGTGGGGGTTCTAACGGTGTCGTTTGGGGGGATAGTGGGATGGGGAAGAGTGAAAATTTGGGTGAAGTGGTCGCGGAAAATGGTGTTAGTGGTGGTGAAGTTGATAACGTAGTTGAGAATTCGAAATTGGTTGAGGGTTTAGGCTCGGTCGTGGAGGAAACCCTGGCAGTGGAGAAAAGCCCTTGGAGGTGGCTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0004888 GO:0004930 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006605 GO:0006810 GO:0006886 GO:0007154 GO:0007165 GO:0007186 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017111 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0038023 GO:0042170 GO:0042886 GO:0043021 GO:0043024 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055085 GO:0060089 GO:0061927 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

211

Amino Acids

22.3

Weight (kDa)

4.13

Isoelectric Point (pI)

56.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02482 AT4G02510 AT4G02510 AT4G02510 AT4G02510
fragaria_vesca	FvH4_2g25480
malus_domestica	MD03G1285700.v1.1 MD11G1305100.v1.1
prunus_persica	Prupe.8G258800_v2.0.a1 Prupe.8G258800_v2.0.a1
pyrus_communis	pycom03g22640 pycom11g26690
rosa_chinensis	RchiOBHm_Chr6g0293691
rosa_laevigata	RLG00000011932
rosa_multiflora	Rmu_co8307375.1_g000001 Rmu_co8497971.1_g000001 Rmu_sc0005431.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173980
rosa_rugosa	Rorug06G0237500 Rorug06G0237500
rosa_samantha	Rh4AG062400 Rh4AG063400 Rh4AG067300 Rh4BG061800 Rh4CG068100 Rh4DG056700 Rh6AG350100 Rh6BG357600 Rh6CG364400 Rh6DG351300
rosa_wichuraiana	Rw0G022990 Rw6G030480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	506
AciI	CCGC	4 cut(s)	147, 174, 337, 506
AcoI	YGGCCR	2 cut(s)	157, 338
AcsI	RAATTY	4 cut(s)	140, 311, 487, 550
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	601
AgsI	TTSAA	1 cut(s)	421
AhdI	GACNNNNNGTC	1 cut(s)	330
AjnI	CCWGG	3 cut(s)	55, 395, 594
AjuI	GAANNNNNNNTTGG	2 cut(s)	542, 574
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	176
AoxI	GGCC	2 cut(s)	157, 338
ApoI	RAATTY	4 cut(s)	140, 311, 487, 550
AspLEI	GCGC	1 cut(s)	248
AsuHPI	GGTGA	3 cut(s)	176, 506, 539
AsuII	TTCGAA	1 cut(s)	554
BccI	CCATC	1 cut(s)	466
BceAI	ACGGC	1 cut(s)	144
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciT130I	CCWGG	3 cut(s)	57, 397, 596
BciVI	GTATCC	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	385
BisI	GCNGC	1 cut(s)	338
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	339
BmcAI	AGTACT	1 cut(s)	83
Bme1390I	CCNGG	3 cut(s)	57, 397, 596
BmeRI	GACNNNNNGTC	1 cut(s)	330
BmrFI	CCNGG	3 cut(s)	57, 397, 596
Bpu1102I	GCTNAGC	1 cut(s)	36
Bpu14I	TTCGAA	1 cut(s)	554
Bsa29I	ATCGAT	1 cut(s)	93
BsaJI	CCNNGG	6 cut(s)	24, 160, 348, 396, 594, 614
BsaWI	WCCGGW	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	1 cut(s)	601
Bse118I	RCCGGY	1 cut(s)	340
BseBI	CCWGG	3 cut(s)	57, 397, 596
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	6 cut(s)	24, 160, 348, 396, 594, 614
BseGI	GGATG	2 cut(s)	367, 477
BseLI	CCNNNNNNNGG	1 cut(s)	601
BseMII	CTCAG	2 cut(s)	50, 177
BseX3I	CGGCCG	1 cut(s)	338
BsgI	GTGCAG	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	506
Bsh1285I	CGRYCG	2 cut(s)	341, 582
BshFI	GGCC	2 cut(s)	159, 340
BshVI	ATCGAT	1 cut(s)	93
BsiEI	CGRYCG	2 cut(s)	341, 582
BsiSI	CCGG	2 cut(s)	285, 341
BslI	CCNNNNNNNGG	1 cut(s)	601
BsmAI	GTCTC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	159, 340
Bsp119I	TTCGAA	1 cut(s)	554
Bsp1720I	GCTNAGC	1 cut(s)	36
BspACI	CCGC	4 cut(s)	147, 174, 337, 506
BspANI	GGCC	2 cut(s)	159, 340
BspCNI	CTCAG	2 cut(s)	49, 178
BspDI	ATCGAT	1 cut(s)	93
BspFNI	CGCG	1 cut(s)	506
BspT104I	TTCGAA	1 cut(s)	554
BsrFI	RCCGGY	1 cut(s)	340
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	6 cut(s)	24, 160, 348, 396, 594, 614
BssT1I	CCWWGG	2 cut(s)	348, 614
Bst2UI	CCWGG	3 cut(s)	57, 397, 596
Bst4CI	ACNGT	2 cut(s)	170, 449
Bst6I	CTCTTC	2 cut(s)	416, 473
BstBI	TTCGAA	1 cut(s)	554
BstDEI	CTNAG	2 cut(s)	36, 186
BstDSI	CCRYGG	1 cut(s)	160
BstF5I	GGATG	2 cut(s)	367, 477
BstFNI	CGCG	1 cut(s)	506
BstHHI	GCGC	1 cut(s)	248
BstMAI	GTCTC	1 cut(s)	176
BstMCI	CGRYCG	2 cut(s)	341, 582
BstNI	CCWGG	3 cut(s)	57, 397, 596
BstSCI	CCNGG	3 cut(s)	55, 395, 594
BstUI	CGCG	1 cut(s)	506
BstZI	CGGCCG	1 cut(s)	338
Bsu15I	ATCGAT	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	2 cut(s)	159, 340
BsuTUI	ATCGAT	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	160
BtsCI	GGATG	2 cut(s)	367, 477
BtsI	GCAGTG	2 cut(s)	255, 606
BtsIMutI	CAGTG	2 cut(s)	255, 606
CfoI	GCGC	1 cut(s)	248
Cfr10I	RCCGGY	1 cut(s)	340
ClaI	ATCGAT	1 cut(s)	93
CsiI	ACCWGGT	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	7 cut(s)	13, 35, 159, 340, 576, 612, 625
CviKI_1	RGCY	7 cut(s)	13, 35, 159, 340, 576, 612, 625
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	2 cut(s)	36, 186
DriI	GACNNNNNGTC	1 cut(s)	330
EaeI	YGGCCR	2 cut(s)	157, 338
EagI	CGGCCG	1 cut(s)	338
Eam1104I	CTCTTC	2 cut(s)	416, 473
Eam1105I	GACNNNNNGTC	1 cut(s)	330
EarI	CTCTTC	2 cut(s)	416, 473
EclXI	CGGCCG	1 cut(s)	338
Eco130I	CCWWGG	2 cut(s)	348, 614
Eco32I	GATATC	1 cut(s)	91
Eco52I	CGGCCG	1 cut(s)	338
EcoRI	GAATTC	2 cut(s)	311, 550
EcoRII	CCWGG	3 cut(s)	55, 395, 594
EcoRV	GATATC	1 cut(s)	91
EcoT14I	CCWWGG	2 cut(s)	348, 614
ErhI	CCWWGG	2 cut(s)	348, 614
FaeI	CATG	1 cut(s)	116
FaiI	YATR	1 cut(s)	114
FatI	CATG	1 cut(s)	112
FauI	CCCGC	2 cut(s)	140, 167
Fnu4HI	GCNGC	1 cut(s)	338
FokI	GGATG	2 cut(s)	374, 484
Fsp4HI	GCNGC	1 cut(s)	338
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	1 cut(s)	338
HaeIII	GGCC	2 cut(s)	159, 340
HapII	CCGG	2 cut(s)	285, 341
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	1 cut(s)	116
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	3 cut(s)	5, 221, 281
HpaI	GTTAAC	1 cut(s)	301
HpaII	CCGG	2 cut(s)	285, 341
HphI	GGTGA	3 cut(s)	176, 506, 539
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	6 cut(s)	25, 88, 181, 226, 310, 324
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	3 cut(s)	137, 310, 328
HpyAV	CCTTC	1 cut(s)	398
HpyCH4III	ACNGT	2 cut(s)	170, 449
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	1 cut(s)	266
HpyF3I	CTNAG	2 cut(s)	36, 186
HpySE526I	ACGT	1 cut(s)	540
Hsp92II	CATG	1 cut(s)	116
HspAI	GCGC	1 cut(s)	246
KspAI	GTTAAC	1 cut(s)	301
LpnPI	CCDG	9 cut(s)	42, 69, 252, 298, 354, 382, 409, 581, 608
MabI	ACCWGGT	1 cut(s)	55
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	1 cut(s)	164
MboII	GAAGA	6 cut(s)	54, 66, 307, 413, 433, 490
MluCI	AATT	6 cut(s)	123, 140, 311, 487, 550, 557
MlyI	GAGTC	2 cut(s)	14, 290
MmeI	TCCRAC	3 cut(s)	159, 288, 347
MseI	TTAA	3 cut(s)	47, 291, 300
MspI	CCGG	2 cut(s)	285, 341
MspR9I	CCNGG	3 cut(s)	57, 397, 596
MvaI	CCWGG	3 cut(s)	57, 397, 596
MvnI	CGCG	1 cut(s)	506
NlaIII	CATG	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	164
NspV	TTCGAA	1 cut(s)	554
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	339
PleI	GAGTC	2 cut(s)	13, 289
PpsI	GAGTC	2 cut(s)	13, 289
Psp6I	CCWGG	3 cut(s)	55, 395, 594
PspGI	CCWGG	3 cut(s)	55, 395, 594
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SaqAI	TTAA	3 cut(s)	47, 291, 300
SatI	GCNGC	1 cut(s)	338
ScaI	AGTACT	1 cut(s)	83
SchI	GAGTC	2 cut(s)	14, 290
ScrFI	CCNGG	3 cut(s)	57, 397, 596
SetI	ASST	6 cut(s)	15, 45, 61, 354, 543, 623
SexAI	ACCWGGT	1 cut(s)	55
SfuI	TTCGAA	1 cut(s)	554
Sse9I	AATT	6 cut(s)	123, 140, 311, 487, 550, 557
SsiI	CCGC	4 cut(s)	147, 174, 337, 506
StyD4I	CCNGG	3 cut(s)	55, 395, 594
StyI	CCWWGG	2 cut(s)	348, 614
TaaI	ACNGT	2 cut(s)	170, 449
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	3 cut(s)	93, 104, 554
TaqII	GACCGA	1 cut(s)	568
TasI	AATT	6 cut(s)	123, 140, 311, 487, 550, 557
TatI	WGTACW	1 cut(s)	81
TauI	GCSGC	1 cut(s)	340
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	3 cut(s)	47, 291, 300
Tru9I	TTAA	3 cut(s)	47, 291, 300
TscAI	CASTG	2 cut(s)	255, 606
TseFI	GTSAC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	164
TspRI	CASTG	2 cut(s)	255, 606
XapI	RAATTY	4 cut(s)	140, 311, 487, 550
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
ZrmI	AGTACT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.