Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G28350 AT2G28350 |
| fragaria_vesca | FvH4_3g32000 FvH4_3g32000 FvH4_6g15960 FvH4_6g15960 FvH4_6g15960 |
| malus_domestica | MD03G1119500.v1.1 MD03G1119700.v1.1 MD04G1096900.v1.1 |
| prunus_persica | Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1 |
| pyrus_communis | pycom04g09200 pycom11g11370 pycom12g11700 |
| rosa_chinensis | RchiOBHm_Chr3g0469661 RchiOBHm_Chr5g0058761 |
| rosa_laevigata | RLG00000024330 RLG00000035245 |
| rosa_multiflora | Rmu_sc0000367.1_g000238 Rmu_sc0006483.1_g000023 Rmu_sc0030116.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00021650 Rroxscaffold_6G00411580 |
| rosa_rugosa | Rorug03G0103100 Rorug03G0103200 Rorug03G0103300 Rorug05G0317900 |
| rosa_samantha | Rh3AG152700 Rh3BG176500 Rh3CG167500 Rh3DG199100 Rh5AG383600 Rh5BG395500 Rh5CG419200 Rh5DG410900 |
| rosa_wichuraiana | Rw3G014400 Rw5G036140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1571 |
| Acc36I | ACCTGC | 1 cut(s) | 287 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 567, 719, 743 |
| AccII | CGCG | 4 cut(s) | 445, 663, 1161, 1202 |
| AciI | CCGC | 6 cut(s) | 84, 216, 443, 547, 1200, 1454 |
| AclWI | GGATC | 6 cut(s) | 50, 230, 458, 694, 1198, 1753 |
| AcoI | YGGCCR | 2 cut(s) | 793, 1619 |
| AcsI | RAATTY | 3 cut(s) | 654, 935, 1484 |
| AcuI | CTGAAG | 2 cut(s) | 53, 684 |
| AcyI | GRCGYC | 1 cut(s) | 1568 |
| AdeI | CACNNNGTG | 1 cut(s) | 567 |
| AfaI | GTAC | 6 cut(s) | 574, 730, 928, 1885, 1925, 1996 |
| AfeI | AGCGCT | 1 cut(s) | 1775 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 284, 490, 546, 567, 719, 743, 1174, 1274 |
| AflIII | ACRYGT | 2 cut(s) | 1159, 2011 |
| AgsI | TTSAA | 8 cut(s) | 21, 95, 283, 866, 1003, 1016, 1148, 1757 |
| AjnI | CCWGG | 4 cut(s) | 988, 1116, 1124, 1373 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 938, 970 |
| AluBI | AGCT | 5 cut(s) | 64, 595, 869, 1603, 1656 |
| AluI | AGCT | 5 cut(s) | 64, 595, 869, 1603, 1656 |
| Alw21I | GWGCWC | 1 cut(s) | 1983 |
| Alw26I | GTCTC | 3 cut(s) | 236, 1675, 1958 |
| AlwI | GGATC | 6 cut(s) | 50, 230, 458, 694, 1198, 1753 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 177 |
| Ama87I | CYCGRG | 2 cut(s) | 918, 1094 |
| Aor51HI | AGCGCT | 1 cut(s) | 1775 |
| AoxI | GGCC | 7 cut(s) | 136, 288, 793, 848, 1091, 1276, 1619 |
| ApoI | RAATTY | 3 cut(s) | 654, 935, 1484 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1693 |
| AspA2I | CCTAGG | 1 cut(s) | 542 |
| AspLEI | GCGC | 4 cut(s) | 80, 665, 1089, 1776 |
| AspS9I | GGNCC | 8 cut(s) | 136, 158, 288, 537, 848, 1092, 1316, 1908 |
| AsuC2I | CCSGG | 2 cut(s) | 209, 1033 |
| AsuHPI | GGTGA | 6 cut(s) | 118, 650, 970, 1092, 1215, 1665 |
| AsuII | TTCGAA | 2 cut(s) | 815, 1272 |
| AvaI | CYCGRG | 2 cut(s) | 918, 1094 |
| AvaII | GGWCC | 4 cut(s) | 158, 537, 1316, 1908 |
| AvrII | CCTAGG | 1 cut(s) | 542 |
| AxyI | CCTNAGG | 1 cut(s) | 132 |
| BalI | TGGCCA | 1 cut(s) | 795 |
| BbsI | GAAGAC | 4 cut(s) | 112, 374, 942, 1849 |
| Bbv12I | GWGCWC | 1 cut(s) | 1983 |
| BbvCI | CCTCAGC | 1 cut(s) | 60 |
| BccI | CCATC | 6 cut(s) | 305, 443, 1000, 1215, 1697, 1985 |
| BceAI | ACGGC | 1 cut(s) | 2064 |
| BciT130I | CCWGG | 4 cut(s) | 990, 1118, 1126, 1375 |
| BciVI | GTATCC | 1 cut(s) | 1198 |
| BclI | TGATCA | 1 cut(s) | 1462 |
| BcnI | CCSGG | 2 cut(s) | 209, 1033 |
| BcoDI | GTCTC | 3 cut(s) | 236, 1675, 1958 |
| BfaI | CTAG | 1 cut(s) | 543 |
| BfoI | RGCGCY | 1 cut(s) | 1777 |
| BfuAI | ACCTGC | 1 cut(s) | 287 |
| BfuI | GTATCC | 1 cut(s) | 1198 |
| BglII | AGATCT | 2 cut(s) | 975, 1641 |
| BlnI | CCTAGG | 1 cut(s) | 542 |
| BlpI | GCTNAGC | 1 cut(s) | 144 |
| Bme1390I | CCNGG | 6 cut(s) | 209, 990, 1033, 1118, 1126, 1375 |
| Bme18I | GGWCC | 4 cut(s) | 158, 537, 1316, 1908 |
| BmeT110I | CYCGRG | 2 cut(s) | 918, 1094 |
| BmgT120I | GGNCC | 8 cut(s) | 136, 158, 288, 537, 848, 1092, 1316, 1908 |
| BmiI | GGNNCC | 7 cut(s) | 276, 289, 538, 539, 1318, 1372, 1909 |
| BmrFI | CCNGG | 6 cut(s) | 209, 990, 1033, 1118, 1126, 1375 |
| BmsI | GCATC | 2 cut(s) | 376, 559 |
| BpiI | GAAGAC | 4 cut(s) | 112, 374, 942, 1849 |
| BpmI | CTGGAG | 1 cut(s) | 1100 |
| Bpu10I | CCTNAGC | 2 cut(s) | 60, 489 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 144 |
| Bpu14I | TTCGAA | 2 cut(s) | 815, 1272 |
| BpuMI | CCSGG | 2 cut(s) | 209, 1033 |
| BsaHI | GRCGYC | 1 cut(s) | 1568 |
| BsaJI | CCNNGG | 9 cut(s) | 114, 291, 499, 542, 796, 1103, 1125, 1169, 1312 |
| BsaWI | WCCGGW | 2 cut(s) | 103, 343 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 284, 490, 546, 567, 719, 743, 1174, 1274 |
| Bse118I | RCCGGY | 1 cut(s) | 80 |
| Bse1I | ACTGG | 5 cut(s) | 1676, 1690, 1846, 1938, 2002 |
| Bse21I | CCTNAGG | 1 cut(s) | 132 |
| Bse3DI | GCAATG | 1 cut(s) | 968 |
| BseBI | CCWGG | 4 cut(s) | 990, 1118, 1126, 1375 |
| BseDI | CCNNGG | 9 cut(s) | 114, 291, 499, 542, 796, 1103, 1125, 1169, 1312 |
| BseGI | GGATG | 4 cut(s) | 313, 499, 775, 1135 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 284, 490, 546, 567, 719, 743, 1174, 1274 |
| BseMI | GCAATG | 1 cut(s) | 968 |
| BseMII | CTCAG | 7 cut(s) | 74, 135, 146, 231, 1011, 1640, 1953 |
| BseNI | ACTGG | 5 cut(s) | 1676, 1690, 1846, 1938, 2002 |
| BseRI | GAGGAG | 1 cut(s) | 183 |
| BseYI | CCCAGC | 1 cut(s) | 1319 |
| BsgI | GTGCAG | 5 cut(s) | 447, 1409, 1458, 1734, 2022 |
| Bsh1236I | CGCG | 4 cut(s) | 445, 663, 1161, 1202 |
| BshFI | GGCC | 7 cut(s) | 138, 290, 795, 850, 1093, 1278, 1621 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1983 |
| BsiHKCI | CYCGRG | 2 cut(s) | 918, 1094 |
| BsiSI | CCGG | 7 cut(s) | 81, 104, 208, 344, 1033, 1302, 1442 |
| BslFI | GGGAC | 3 cut(s) | 346, 550, 620 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 284, 490, 546, 567, 719, 743, 1174, 1274 |
| BsmAI | GTCTC | 3 cut(s) | 236, 1675, 1958 |
| BsmBI | CGTCTC | 1 cut(s) | 1958 |
| BsmFI | GGGAC | 3 cut(s) | 346, 550, 620 |
| BsmI | GAATGC | 2 cut(s) | 115, 1714 |
| BsnI | GGCC | 7 cut(s) | 138, 290, 795, 850, 1093, 1278, 1621 |
| BsoBI | CYCGRG | 2 cut(s) | 918, 1094 |
| Bsp119I | TTCGAA | 2 cut(s) | 815, 1272 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1983 |
| Bsp1407I | TGTACA | 1 cut(s) | 1923 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 144 |
| Bsp19I | CCATGG | 3 cut(s) | 499, 796, 1169 |
| BspACI | CCGC | 6 cut(s) | 84, 216, 443, 547, 1200, 1454 |
| BspANI | GGCC | 7 cut(s) | 138, 290, 795, 850, 1093, 1278, 1621 |
| BspCNI | CTCAG | 7 cut(s) | 73, 136, 145, 232, 1012, 1641, 1954 |
| BspFNI | CGCG | 4 cut(s) | 445, 663, 1161, 1202 |
| BspHI | TCATGA | 2 cut(s) | 1915, 2040 |
| BspLI | GGNNCC | 7 cut(s) | 276, 289, 538, 539, 1318, 1372, 1909 |
| BspMI | ACCTGC | 1 cut(s) | 287 |
| BspPI | GGATC | 6 cut(s) | 50, 230, 458, 694, 1198, 1753 |
| BspT104I | TTCGAA | 2 cut(s) | 815, 1272 |
| BsrDI | GCAATG | 1 cut(s) | 968 |
| BsrFI | RCCGGY | 1 cut(s) | 80 |
| BsrGI | TGTACA | 1 cut(s) | 1923 |
| BsrI | ACTGG | 5 cut(s) | 1676, 1690, 1846, 1938, 2002 |
| BssAI | RCCGGY | 1 cut(s) | 80 |
| BssECI | CCNNGG | 9 cut(s) | 114, 291, 499, 542, 796, 1103, 1125, 1169, 1312 |
| BssNI | GRCGYC | 1 cut(s) | 1568 |
| BssT1I | CCWWGG | 6 cut(s) | 114, 499, 542, 796, 1169, 1312 |
| Bst2UI | CCWGG | 4 cut(s) | 990, 1118, 1126, 1375 |
| Bst4CI | ACNGT | 4 cut(s) | 733, 1104, 1669, 1850 |
| BstACI | GRCGYC | 1 cut(s) | 1568 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 878 |
| BstAUI | TGTACA | 1 cut(s) | 1923 |
| BstBI | TTCGAA | 2 cut(s) | 815, 1272 |
| BstC8I | GCNNGC | 9 cut(s) | 72, 76, 82, 150, 1091, 1200, 1360, 1364, 1380 |
| BstDEI | CTNAG | 9 cut(s) | 52, 60, 132, 144, 240, 489, 1020, 1649, 1962 |
| BstDSI | CCRYGG | 4 cut(s) | 499, 796, 1103, 1169 |
| BstEII | GGTNACC | 1 cut(s) | 1120 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 488, 1272 |
| BstF5I | GGATG | 4 cut(s) | 313, 499, 775, 1135 |
| BstFNI | CGCG | 4 cut(s) | 445, 663, 1161, 1202 |
| BstH2I | RGCGCY | 1 cut(s) | 1777 |
| BstHHI | GCGC | 4 cut(s) | 80, 665, 1089, 1776 |
| BstMAI | GTCTC | 3 cut(s) | 236, 1675, 1958 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 84, 149, 362, 878, 1379, 1600, 1659 |
| BstNI | CCWGG | 4 cut(s) | 990, 1118, 1126, 1375 |
| BstNSI | RCATGY | 5 cut(s) | 74, 152, 1198, 1366, 1382 |
| BstPI | GGTNACC | 1 cut(s) | 1120 |
| BstSCI | CCNGG | 6 cut(s) | 207, 988, 1031, 1116, 1124, 1373 |
| BstUI | CGCG | 4 cut(s) | 445, 663, 1161, 1202 |
| BstV2I | GAAGAC | 4 cut(s) | 112, 374, 942, 1849 |
| BstX2I | RGATCY | 4 cut(s) | 55, 975, 1641, 1745 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 803 |
| BstYI | RGATCY | 4 cut(s) | 55, 975, 1641, 1745 |
| Bsu36I | CCTNAGG | 1 cut(s) | 132 |
| BsuI | GTATCC | 1 cut(s) | 1198 |
| BsuRI | GGCC | 7 cut(s) | 138, 290, 795, 850, 1093, 1278, 1621 |
| BtgI | CCRYGG | 4 cut(s) | 499, 796, 1103, 1169 |
| BtsCI | GGATG | 4 cut(s) | 313, 499, 775, 1135 |
| BtsIMutI | CAGTG | 2 cut(s) | 1846, 2038 |
| BveI | ACCTGC | 1 cut(s) | 287 |
| Cac8I | GCNNGC | 9 cut(s) | 72, 76, 82, 150, 1091, 1200, 1360, 1364, 1380 |
| CaiI | CAGNNNCTG | 1 cut(s) | 177 |
| CciI | TCATGA | 2 cut(s) | 1915, 2040 |
| CfoI | GCGC | 4 cut(s) | 80, 665, 1089, 1776 |
| Cfr10I | RCCGGY | 1 cut(s) | 80 |
| Cfr13I | GGNCC | 8 cut(s) | 136, 158, 288, 537, 848, 1092, 1316, 1908 |
| CseI | GACGC | 1 cut(s) | 1975 |
| Csp6I | GTAC | 6 cut(s) | 573, 729, 927, 1884, 1924, 1995 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 382, 417 |
| CviQI | GTAC | 6 cut(s) | 573, 729, 927, 1884, 1924, 1995 |
| DdeI | CTNAG | 9 cut(s) | 52, 60, 132, 144, 240, 489, 1020, 1649, 1962 |
| DraIII | CACNNNGTG | 1 cut(s) | 567 |
| EaeI | YGGCCR | 2 cut(s) | 793, 1619 |
| Eco130I | CCWWGG | 6 cut(s) | 114, 499, 542, 796, 1169, 1312 |
| Eco47I | GGWCC | 4 cut(s) | 158, 537, 1316, 1908 |
| Eco47III | AGCGCT | 1 cut(s) | 1775 |
| Eco57I | CTGAAG | 2 cut(s) | 53, 684 |
| Eco81I | CCTNAGG | 1 cut(s) | 132 |
| Eco88I | CYCGRG | 2 cut(s) | 918, 1094 |
| Eco91I | GGTNACC | 1 cut(s) | 1120 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 488, 1272 |
| EcoO109I | RGGNCCY | 2 cut(s) | 537, 1908 |
| EcoO65I | GGTNACC | 1 cut(s) | 1120 |
| EcoRI | GAATTC | 2 cut(s) | 654, 935 |
| EcoRII | CCWGG | 4 cut(s) | 988, 1116, 1124, 1373 |
| EcoT14I | CCWWGG | 6 cut(s) | 114, 499, 542, 796, 1169, 1312 |
| ErhI | CCWWGG | 6 cut(s) | 114, 499, 542, 796, 1169, 1312 |
| Esp3I | CGTCTC | 1 cut(s) | 1958 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1266, 1298 |
| FaqI | GGGAC | 3 cut(s) | 346, 550, 620 |
| FauI | CCCGC | 2 cut(s) | 1207, 1461 |
| FauNDI | CATATG | 1 cut(s) | 739 |
| FbaI | TGATCA | 1 cut(s) | 1462 |
| FokI | GGATG | 4 cut(s) | 320, 506, 782, 1142 |
| FspBI | CTAG | 1 cut(s) | 543 |
| GlaI | GCGC | 4 cut(s) | 79, 664, 1088, 1775 |
| GsaI | CCCAGC | 1 cut(s) | 1323 |
| GsuI | CTGGAG | 1 cut(s) | 1100 |
| HaeII | RGCGCY | 1 cut(s) | 1777 |
| HaeIII | GGCC | 7 cut(s) | 138, 290, 795, 850, 1093, 1278, 1621 |
| HapII | CCGG | 7 cut(s) | 81, 104, 208, 344, 1033, 1302, 1442 |
| HgaI | GACGC | 1 cut(s) | 1975 |
| HhaI | GCGC | 4 cut(s) | 80, 665, 1089, 1776 |
| Hin1I | GRCGYC | 1 cut(s) | 1568 |
| Hin6I | GCGC | 4 cut(s) | 78, 663, 1087, 1774 |
| HinP1I | GCGC | 4 cut(s) | 78, 663, 1087, 1774 |
| HincII | GTYRAC | 1 cut(s) | 375 |
| HindII | GTYRAC | 1 cut(s) | 375 |
| HindIII | AAGCTT | 1 cut(s) | 593 |
| HpaII | CCGG | 7 cut(s) | 81, 104, 208, 344, 1033, 1302, 1442 |
| HphI | GGTGA | 6 cut(s) | 118, 650, 970, 1092, 1215, 1665 |
| Hpy166II | GTNNAC | 4 cut(s) | 158, 375, 583, 910 |
| Hpy188III | TCNNGA | 9 cut(s) | 172, 239, 1003, 1743, 1835, 1889, 1916, 1988, 2041 |
| Hpy8I | GTNNAC | 4 cut(s) | 158, 375, 583, 910 |
| Hpy99I | CGWCG | 2 cut(s) | 663, 1297 |
| HpyAV | CCTTC | 3 cut(s) | 28, 1228, 1268 |
| HpyCH4III | ACNGT | 4 cut(s) | 733, 1104, 1669, 1850 |
| HpyCH4IV | ACGT | 5 cut(s) | 8, 371, 1295, 1568, 2013 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 84, 149, 362, 878, 1379, 1600, 1659 |
| HpyF3I | CTNAG | 9 cut(s) | 52, 60, 132, 144, 240, 489, 1020, 1649, 1962 |
| HpySE526I | ACGT | 5 cut(s) | 8, 371, 1295, 1568, 2013 |
| Hsp92I | GRCGYC | 1 cut(s) | 1568 |
| HspAI | GCGC | 4 cut(s) | 78, 663, 1087, 1774 |
| KflI | GGGWCCC | 1 cut(s) | 537 |
| KroI | GCCGGC | 1 cut(s) | 80 |
| KroNI | GCCGGC | 1 cut(s) | 82 |
| Ksp22I | TGATCA | 1 cut(s) | 1462 |
| LmnI | GCTCC | 1 cut(s) | 1370 |
| LweI | GCATC | 2 cut(s) | 376, 559 |
| MaeI | CTAG | 1 cut(s) | 543 |
| MaeII | ACGT | 5 cut(s) | 8, 371, 1295, 1568, 2013 |
| MaeIII | GTNAC | 4 cut(s) | 1098, 1120, 1551, 1844 |
| MboII | GAAGA | 8 cut(s) | 112, 379, 690, 942, 1020, 1249, 1849, 1883 |
| MfeI | CAATTG | 1 cut(s) | 612 |
| MflI | RGATCY | 4 cut(s) | 55, 975, 1641, 1745 |
| MhlI | GDGCHC | 1 cut(s) | 1983 |
| MlsI | TGGCCA | 1 cut(s) | 795 |
| MluI | ACGCGT | 1 cut(s) | 1159 |
| MluNI | TGGCCA | 1 cut(s) | 795 |
| MlyI | GAGTC | 3 cut(s) | 602, 701, 1106 |
| MmeI | TCCRAC | 4 cut(s) | 631, 737, 1215, 1996 |
| Mox20I | TGGCCA | 1 cut(s) | 795 |
| MreI | CGCCGGCG | 1 cut(s) | 80 |
| MroNI | GCCGGC | 1 cut(s) | 80 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1693 |
| MscI | TGGCCA | 1 cut(s) | 795 |
| MseI | TTAA | 3 cut(s) | 222, 327, 2007 |
| MslI | CAYNNNNRTG | 2 cut(s) | 153, 801 |
| Msp20I | TGGCCA | 1 cut(s) | 795 |
| MspI | CCGG | 7 cut(s) | 81, 104, 208, 344, 1033, 1302, 1442 |
| MspR9I | CCNGG | 6 cut(s) | 209, 990, 1033, 1118, 1126, 1375 |
| MunI | CAATTG | 1 cut(s) | 612 |
| Mva1269I | GAATGC | 2 cut(s) | 115, 1714 |
| MvaI | CCWGG | 4 cut(s) | 990, 1118, 1126, 1375 |
| MvnI | CGCG | 4 cut(s) | 445, 663, 1161, 1202 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 84, 149, 362, 878, 1379, 1600, 1659 |
| NaeI | GCCGGC | 1 cut(s) | 82 |
| NciI | CCSGG | 2 cut(s) | 209, 1033 |
| NcoI | CCATGG | 3 cut(s) | 499, 796, 1169 |
| NdeI | CATATG | 1 cut(s) | 739 |
| NgoMIV | GCCGGC | 1 cut(s) | 80 |
| NlaIV | GGNNCC | 7 cut(s) | 276, 289, 538, 539, 1318, 1372, 1909 |
| NmeAIII | GCCGAG | 3 cut(s) | 316, 731, 1102 |
| NmuCI | GTSAC | 3 cut(s) | 1098, 1551, 1844 |
| NspI | RCATGY | 5 cut(s) | 74, 152, 1198, 1366, 1382 |
| NspV | TTCGAA | 2 cut(s) | 815, 1272 |
| PaeI | GCATGC | 4 cut(s) | 74, 152, 1366, 1382 |
| PaeR7I | CTCGAG | 1 cut(s) | 918 |
| PagI | TCATGA | 2 cut(s) | 1915, 2040 |
| PctI | GAATGC | 2 cut(s) | 115, 1714 |
| PdiI | GCCGGC | 1 cut(s) | 82 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1693 |
| PflFI | GACNNNGTC | 1 cut(s) | 1549 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 567, 719, 743 |
| PfoI | TCCNGGA | 2 cut(s) | 988, 1031 |
| PleI | GAGTC | 3 cut(s) | 602, 700, 1105 |
| PpsI | GAGTC | 3 cut(s) | 602, 700, 1105 |
| PpuMI | RGGWCCY | 2 cut(s) | 537, 1908 |
| Psp5II | RGGWCCY | 2 cut(s) | 537, 1908 |
| Psp6I | CCWGG | 4 cut(s) | 988, 1116, 1124, 1373 |
| PspEI | GGTNACC | 1 cut(s) | 1120 |
| PspFI | CCCAGC | 1 cut(s) | 1319 |
| PspGI | CCWGG | 4 cut(s) | 988, 1116, 1124, 1373 |
| PspN4I | GGNNCC | 7 cut(s) | 276, 289, 538, 539, 1318, 1372, 1909 |
| PspPI | GGNCC | 8 cut(s) | 136, 158, 288, 537, 848, 1092, 1316, 1908 |
| PspPPI | RGGWCCY | 2 cut(s) | 537, 1908 |
| PspXI | VCTCGAGB | 1 cut(s) | 918 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1125, 1157 |
| PstNI | CAGNNNCTG | 1 cut(s) | 177 |
| PsuI | RGATCY | 4 cut(s) | 55, 975, 1641, 1745 |
| PsyI | GACNNNGTC | 1 cut(s) | 1549 |
| RsaI | GTAC | 6 cut(s) | 574, 730, 928, 1885, 1925, 1996 |
| RsaNI | GTAC | 6 cut(s) | 573, 729, 927, 1884, 1924, 1995 |
| RseI | CAYNNNNRTG | 2 cut(s) | 153, 801 |
| SaqAI | TTAA | 3 cut(s) | 222, 327, 2007 |
| Sau96I | GGNCC | 8 cut(s) | 136, 158, 288, 537, 848, 1092, 1316, 1908 |
| SchI | GAGTC | 3 cut(s) | 602, 701, 1106 |
| ScrFI | CCNGG | 6 cut(s) | 209, 990, 1033, 1118, 1126, 1375 |
| SduI | GDGCHC | 1 cut(s) | 1983 |
| SfaNI | GCATC | 2 cut(s) | 376, 559 |
| Sfr274I | CTCGAG | 1 cut(s) | 918 |
| SfuI | TTCGAA | 2 cut(s) | 815, 1272 |
| SgrAI | CRCCGGYG | 1 cut(s) | 80 |
| SinI | GGWCC | 4 cut(s) | 158, 537, 1316, 1908 |
| SlaI | CTCGAG | 1 cut(s) | 918 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 153, 801 |
| SmlI | CTYRAG | 1 cut(s) | 918 |
| SmoI | CTYRAG | 1 cut(s) | 918 |
| SphI | GCATGC | 4 cut(s) | 74, 152, 1366, 1382 |
| SsiI | CCGC | 6 cut(s) | 84, 216, 443, 547, 1200, 1454 |
| SspMI | CTAG | 1 cut(s) | 543 |
| StyD4I | CCNGG | 6 cut(s) | 207, 988, 1031, 1116, 1124, 1373 |
| StyI | CCWWGG | 6 cut(s) | 114, 499, 542, 796, 1169, 1312 |
| TaaI | ACNGT | 4 cut(s) | 733, 1104, 1669, 1850 |
| TaiI | ACGT | 5 cut(s) | 11, 374, 1298, 1571, 2016 |
| TaqI | TCGA | 5 cut(s) | 815, 919, 1272, 1813, 1987 |
| TatI | WGTACW | 2 cut(s) | 728, 1923 |
| TauI | GCSGC | 3 cut(s) | 87, 218, 550 |
| Tru1I | TTAA | 3 cut(s) | 222, 327, 2007 |
| Tru9I | TTAA | 3 cut(s) | 222, 327, 2007 |
| TscAI | CASTG | 2 cut(s) | 1853, 2038 |
| TseFI | GTSAC | 3 cut(s) | 1098, 1551, 1844 |
| Tsp45I | GTSAC | 3 cut(s) | 1098, 1551, 1844 |
| TspDTI | ATGAA | 9 cut(s) | 217, 800, 1036, 1146, 1833, 1849, 2029, 2037, 2057 |
| TspGWI | ACGGA | 1 cut(s) | 903 |
| TspRI | CASTG | 2 cut(s) | 1853, 2038 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1549 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 567, 719, 743 |
| VpaK11BI | GGWCC | 4 cut(s) | 158, 537, 1316, 1908 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 488, 1272 |
| XapI | RAATTY | 3 cut(s) | 654, 935, 1484 |
| XceI | RCATGY | 5 cut(s) | 74, 152, 1198, 1366, 1382 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 226 |
| XhoI | CTCGAG | 1 cut(s) | 918 |
| XmaJI | CCTAGG | 1 cut(s) | 542 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1693 |
| XspI | CTAG | 1 cut(s) | 543 |
| ZraI | GACGTC | 1 cut(s) | 1569 |