pycom13g08330

GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
5534130 .. 5536572
2443 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1788 bp
ATGGTTTGGAAGAAGCCTGCATTTCCAGAGCAGTTTTATTCACCCAGAAGAAAGGTTATTTCTGGGTTTGGCTTAGGAATTGGAGTTTCAGTGATTGTACTCGGTGTACTGTTTTTTGCCGACTTCTTGAAGACTCCTGCAGTGGAAACTTCGATTCAAGGGTTTTACAGTTTGAATTCTTCTTCTGTTTCATGGCCTTTCTCCTTTTCAAGCAGTTCAGAAACGCAGGATTTTGTGGACAAAACCCATGAAGCAAATGAGTCAATAGTTGCTGGGAAGCAAAATTTTACTGTTTTGGAGAAGCCCCATTTGGGGAATTTTACAGAGGAGGGTAAAGATGGAAGCTTTGGGGTTGGAGGAGAAATGGGTAAGCAGAAAAACAGTGAGAAGGGGCTAGCAATTGCTGAAAACGGTAACTTTTTGAATTCAAATGGGGGAGGAGCTGGTTTGGAGATTGCCCATTTGGGAAACTCCTCTGAGGTTTCGAAAAATGGAAGCTTGCATGGTGAGGAAGGGAGGGCTAATGGGAATCTTAGCCTGTCTGGGAAGGAAGATATGCATGCAGAGAAGGCAGTTGAAGGTAGTTTTTCAAGGAATTCTACTAGTGTGGATGGTAATGTTGCCAAAATTGTGAAGAAGAAAAGGGCTTGGAAGGCAGCTCATCGAGGAAATTCGACTCTGAAAATCGCTGAGTCTGATTCTCAAATGGGGAAAATGCAGACTGATTTGTATCAGAAATGTGATATTTTTAATGGTAGGTGGGCGAGAGATGATTCAAAGCCATATTATCCTGGAGGTTCTTGCCCATACATTGATAGGGATTTTAATTGTCACCTCAATGGGAGGCCAGACAATGCTTTTATAAAATGGAAATGGCAGCCAAATGAATGTGACATCCCAAGTCTGAATGCCACTGATTTTCTGATGAGGTTGAGGGGAAAGCGGTTGGTTTTTGTGGGGGATTCACTGAATAGGAACATGTGGGAATCTCTGGTTTGTATTCTTCGTCATGTCATTCGAAACAAGAAAAGAGTTCATGAGATTTCTGGGAAGAAGGAATTTAAAAAGAAGGGCGTTTATGCATTCAGATTTGAGGATTATAATTGTTCAGTGGATTTTGTTGTTTCTCCATTCCTTGTTAGGGAATCATCATTCACGAGTAAAAACGGTACGTTTGAGACATTAAGGTTGGATTTGATGGACCGGACAACTTCAATGTACCATGATGCGGATGTCATAGTTTTTAACACTGGACACTGGTGGACTCATGAAAAAACATCTCGAGGAGAAGAATACTACCAAGAAGGCAATTATGTGCATCCAAGACTCAAGGTTCTTGAAGCATACAAGAGGGCTCTCACCACTTGGGCCAGATGGGTTGACAAGTATATTGATGTCAACCGGACTCAGGTTTTCTTCAGAGGATATTCAGTTACCCATTTCAGCGGAGGGCAATGGAACTCAGGCGGACAGTGCCACAAAGAAACGGAGCCAATCTTTAACGAAACTTATTTAGCGAATTACCCTTCAAAGATGAGAGCTCTAGAGCATGTACTTAAGGAAATGAAAACTCCGGTGATTTATTTAAACATAAGTAGGCTTACCGATTACCGAAAAGACGGACACCCTTCCATTTACAGAATGAAATACAAGACAGTGGAAGAACAAATTACGGCTGAGAGGTCTCAGGATTGCAGCCATTGGTGCTTGCCTGGAGTTCCAGATGCTTGGAATGAATTGCTATACGCCGCTCTTTTGAAGGCCGGATGGGGATCACGCGAAAACTGA

Protein Analysis

596

Amino Acids

67.47

Weight (kDa)

8.84

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 245 - 298 6.4e-21 PMR5 N terminal Domain
PC-Esterase PF13839 299 - 583 4.9e-99 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 863, 1101
AccBSI CCGCTC 1 cut(s) 1751
AccII CGCG 1 cut(s) 1779
AciI CCGC 5 cut(s) 943, 1229, 1446, 1467, 1749
AclWI GGATC 1 cut(s) 1780
AcsI RAATTY 7 cut(s) 175, 283, 316, 424, 595, 670, 1058
AcuI CTGAAG 1 cut(s) 1402
AfaI GTAC 5 cut(s) 99, 108, 1171, 1220, 1554
AfiI CCNNNNNNNGG 5 cut(s) 311, 312, 1141, 1228, 1408
AflII CTTAAG 1 cut(s) 1556
AflIII ACRYGT 1 cut(s) 978
AhlI ACTAGT 1 cut(s) 602
AjnI CCWGG 2 cut(s) 790, 1711
AjuI GAANNNNNNNTTGG 2 cut(s) 293, 325
AluBI AGCT 5 cut(s) 345, 443, 498, 659, 1541
AluI AGCT 5 cut(s) 345, 443, 498, 659, 1541
Alw21I GWGCWC 1 cut(s) 1543
Alw26I GTCTC 2 cut(s) 1172, 1689
AlwI GGATC 1 cut(s) 1780
Ama87I CYCGRG 1 cut(s) 1281
AoxI GGCC 4 cut(s) 194, 845, 1368, 1761
ApeKI GCWGC 3 cut(s) 656, 877, 1695
ApoI RAATTY 7 cut(s) 175, 283, 316, 424, 595, 670, 1058
AspS9I GGNCC 2 cut(s) 1201, 1368
AsuHPI GGTGA 5 cut(s) 33, 518, 824, 1351, 1588
AsuII TTCGAA 2 cut(s) 485, 1018
AsuNHI GCTAGC 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 1281
AvaII GGWCC 1 cut(s) 1201
BanII GRGCYC 2 cut(s) 1357, 1543
BauI CACGAG 1 cut(s) 1156
BbsI GAAGAC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 1543
BbvI GCAGC 3 cut(s) 668, 889, 1707
BccI CCATC 5 cut(s) 332, 605, 1192, 1368, 1761
BceAI ACGGC 1 cut(s) 1689
BciT130I CCWGG 2 cut(s) 792, 1713
BcoDI GTCTC 2 cut(s) 1172, 1689
BcuI ACTAGT 1 cut(s) 602
BfaI CTAG 3 cut(s) 395, 603, 1544
BfmI CTRYAG 1 cut(s) 138
BfrI CTTAAG 1 cut(s) 1556
BisI GCNGC 4 cut(s) 657, 878, 1696, 1749
BlsI GCNGC 4 cut(s) 658, 879, 1697, 1750
Bme1390I CCNGG 2 cut(s) 792, 1713
Bme18I GGWCC 1 cut(s) 1201
BmeT110I CYCGRG 1 cut(s) 1281
BmgT120I GGNCC 2 cut(s) 1201, 1368
BmiI GGNNCC 1 cut(s) 1491
BmrFI CCNGG 2 cut(s) 792, 1713
BmsI GCATC 3 cut(s) 1216, 1327, 1714
BmtI GCTAGC 1 cut(s) 398
BpiI GAAGAC 1 cut(s) 137
BpmI CTGGAG 2 cut(s) 813, 1734
Bpu10I CCTNAGC 1 cut(s) 73
Bpu14I TTCGAA 2 cut(s) 485, 1018
BpuEI CTTGAG 1 cut(s) 1313
BsaBI GATNNNNATC 2 cut(s) 729, 1771
BsaI GGTCTC 1 cut(s) 1689
BsaWI WCCGGW 3 cut(s) 1203, 1401, 1573
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 5 cut(s) 311, 312, 1141, 1228, 1408
Bse1I ACTGG 2 cut(s) 1255, 1262
Bse3DI GCAATG 1 cut(s) 1460
Bse8I GATNNNNATC 2 cut(s) 729, 1771
BseBI CCWGG 2 cut(s) 792, 1713
BseGI GGATG 5 cut(s) 616, 894, 1237, 1318, 1772
BseJI GATNNNNATC 2 cut(s) 729, 1771
BseLI CCNNNNNNNGG 5 cut(s) 311, 312, 1141, 1228, 1408
BseMI GCAATG 1 cut(s) 1460
BseMII CTCAG 6 cut(s) 468, 681, 1421, 1476, 1668, 1700
BseNI ACTGG 2 cut(s) 1255, 1262
BseRI GAGGAG 5 cut(s) 341, 372, 453, 463, 1299
BseXI GCAGC 3 cut(s) 668, 889, 1707
BseYI CCCAGC 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 1779
BshFI GGCC 4 cut(s) 196, 847, 1370, 1763
BsiHKAI GWGCWC 1 cut(s) 1543
BsiHKCI CYCGRG 1 cut(s) 1281
BsiSI CCGG 4 cut(s) 1204, 1402, 1574, 1764
BslI CCNNNNNNNGG 5 cut(s) 311, 312, 1141, 1228, 1408
BsmAI GTCTC 2 cut(s) 1172, 1689
BsmI GAATGC 2 cut(s) 913, 1082
BsnI GGCC 4 cut(s) 196, 847, 1370, 1763
Bso31I GGTCTC 1 cut(s) 1689
BsoBI CYCGRG 1 cut(s) 1281
Bsp119I TTCGAA 2 cut(s) 485, 1018
Bsp1286I GDGCHC 2 cut(s) 1357, 1543
Bsp143I GATC 1 cut(s) 1772
BspACI CCGC 5 cut(s) 943, 1229, 1446, 1467, 1749
BspANI GGCC 4 cut(s) 196, 847, 1370, 1763
BspCNI CTCAG 6 cut(s) 469, 682, 1420, 1475, 1669, 1699
BspFNI CGCG 1 cut(s) 1779
BspHI TCATGA 2 cut(s) 1036, 1267
BspLI GGNNCC 1 cut(s) 1491
BspMAI CTGCAG 1 cut(s) 142
BspOI GCTAGC 1 cut(s) 398
BspPI GGATC 1 cut(s) 1780
BspT104I TTCGAA 2 cut(s) 485, 1018
BspTI CTTAAG 1 cut(s) 1556
BspTNI GGTCTC 1 cut(s) 1689
BsrBI CCGCTC 1 cut(s) 1751
BsrDI GCAATG 1 cut(s) 1460
BsrI ACTGG 2 cut(s) 1255, 1262
BssMI GATC 1 cut(s) 1772
BssSI CACGAG 1 cut(s) 1156
Bst2BI CACGAG 1 cut(s) 1156
Bst2UI CCWGG 2 cut(s) 792, 1713
Bst4CI ACNGT 8 cut(s) 111, 170, 292, 383, 413, 1169, 1473, 1657
BstAFI CTTAAG 1 cut(s) 1556
BstBI TTCGAA 2 cut(s) 485, 1018
BstC8I GCNNGC 5 cut(s) 18, 396, 500, 561, 1709
BstDEI CTNAG 8 cut(s) 73, 477, 533, 690, 1407, 1462, 1677, 1686
BstF5I GGATG 5 cut(s) 616, 894, 1237, 1318, 1772
BstFNI CGCG 1 cut(s) 1779
BstKTI GATC 1 cut(s) 1775
BstMAI GTCTC 2 cut(s) 1172, 1689
BstMBI GATC 1 cut(s) 1772
BstMWI GCNNNNNNNGC 4 cut(s) 569, 653, 1473, 1704
BstNI CCWGG 2 cut(s) 792, 1713
BstNSI RCATGY 3 cut(s) 563, 982, 1553
BstSCI CCNGG 2 cut(s) 790, 1711
BstSFI CTRYAG 1 cut(s) 138
BstUI CGCG 1 cut(s) 1779
BstV1I GCAGC 3 cut(s) 668, 889, 1707
BstV2I GAAGAC 1 cut(s) 137
BstXI CCANNNNNNTGG 1 cut(s) 1728
BsuRI GGCC 4 cut(s) 196, 847, 1370, 1763
BtsCI GGATG 5 cut(s) 616, 894, 1237, 1318, 1772
BtsI GCAGTG 1 cut(s) 147
Cac8I GCNNGC 5 cut(s) 18, 396, 500, 561, 1709
CciI TCATGA 2 cut(s) 1036, 1267
Cfr13I GGNCC 2 cut(s) 1201, 1368
Csp6I GTAC 5 cut(s) 98, 107, 1170, 1219, 1553
CviQI GTAC 5 cut(s) 98, 107, 1170, 1219, 1553
DdeI CTNAG 8 cut(s) 73, 477, 533, 690, 1407, 1462, 1677, 1686
DpnI GATC 1 cut(s) 1774
DpnII GATC 1 cut(s) 1772
DraI TTTAAA 2 cut(s) 1063, 1587
EciI GGCGGA 1 cut(s) 1482
Ecl136II GAGCTC 1 cut(s) 1541
Eco24I GRGCYC 2 cut(s) 1357, 1543
Eco31I GGTCTC 1 cut(s) 1689
Eco47I GGWCC 1 cut(s) 1201
Eco53kI GAGCTC 1 cut(s) 1541
Eco57I CTGAAG 1 cut(s) 1402
Eco88I CYCGRG 1 cut(s) 1281
EcoICRI GAGCTC 1 cut(s) 1541
EcoRI GAATTC 3 cut(s) 175, 424, 595
EcoRII CCWGG 2 cut(s) 790, 1711
EcoT22I ATGCAT 2 cut(s) 561, 1084
EcoT38I GRGCYC 2 cut(s) 1357, 1543
Fnu4HI GCNGC 4 cut(s) 657, 878, 1696, 1749
FokI GGATG 5 cut(s) 623, 881, 1244, 1305, 1779
FriOI GRGCYC 2 cut(s) 1357, 1543
Fsp4HI GCNGC 4 cut(s) 657, 878, 1696, 1749
FspBI CTAG 3 cut(s) 395, 603, 1544
GluI GCNGC 4 cut(s) 657, 878, 1696, 1749
GsaI CCCAGC 1 cut(s) 276
GsuI CTGGAG 2 cut(s) 813, 1734
HaeIII GGCC 4 cut(s) 196, 847, 1370, 1763
HapII CCGG 4 cut(s) 1204, 1402, 1574, 1764
HincII GTYRAC 2 cut(s) 1381, 1399
HindII GTYRAC 2 cut(s) 1381, 1399
HindIII AAGCTT 2 cut(s) 343, 496
HpaII CCGG 4 cut(s) 1204, 1402, 1574, 1764
HphI GGTGA 5 cut(s) 33, 518, 824, 1351, 1588
Hpy166II GTNNAC 5 cut(s) 107, 238, 1263, 1381, 1399
Hpy188I TCNGA 9 cut(s) 220, 478, 681, 697, 735, 906, 924, 1088, 1421
Hpy8I GTNNAC 5 cut(s) 107, 238, 1263, 1381, 1399
HpyCH4III ACNGT 8 cut(s) 111, 170, 292, 383, 413, 1169, 1473, 1657
HpyCH4IV ACGT 1 cut(s) 1172
HpyCH4V TGCA 9 cut(s) 20, 140, 502, 559, 563, 718, 1082, 1318, 1695
HpyF10VI GCNNNNNNNGC 4 cut(s) 569, 653, 1473, 1704
HpyF3I CTNAG 8 cut(s) 73, 477, 533, 690, 1407, 1462, 1677, 1686
HpySE526I ACGT 1 cut(s) 1172
Kzo9I GATC 1 cut(s) 1772
LmnI GCTCC 2 cut(s) 440, 1489
Lsp1109I GCAGC 3 cut(s) 668, 889, 1707
LweI GCATC 3 cut(s) 1216, 1327, 1714
MaeI CTAG 3 cut(s) 395, 603, 1544
MaeII ACGT 1 cut(s) 1172
MaeIII GTNAC 4 cut(s) 413, 830, 890, 1432
MalI GATC 1 cut(s) 1774
MbiI CCGCTC 1 cut(s) 1751
MboI GATC 1 cut(s) 1772
MfeI CAATTG 1 cut(s) 399
MhlI GDGCHC 2 cut(s) 1357, 1543
MlyI GAGTC 7 cut(s) 127, 269, 670, 701, 1258, 1320, 1399
MmeI TCCRAC 2 cut(s) 334, 1170
Mph1103I ATGCAT 2 cut(s) 561, 1084
MseI TTAA 8 cut(s) 750, 825, 1062, 1184, 1245, 1500, 1557, 1586
MslI CAYNNNNRTG 1 cut(s) 837
MspA1I CMGCKG 1 cut(s) 1446
MspCI CTTAAG 1 cut(s) 1556
MspI CCGG 4 cut(s) 1204, 1402, 1574, 1764
MspR9I CCNGG 2 cut(s) 792, 1713
MunI CAATTG 1 cut(s) 399
Mva1269I GAATGC 2 cut(s) 913, 1082
MvaI CCWGG 2 cut(s) 792, 1713
MvnI CGCG 1 cut(s) 1779
MwoI GCNNNNNNNGC 4 cut(s) 569, 653, 1473, 1704
NdeII GATC 1 cut(s) 1772
NheI GCTAGC 1 cut(s) 394
NlaIV GGNNCC 1 cut(s) 1491
NmuCI GTSAC 2 cut(s) 830, 890
NsiI ATGCAT 2 cut(s) 561, 1084
NspI RCATGY 3 cut(s) 563, 982, 1553
NspV TTCGAA 2 cut(s) 485, 1018
PaeI GCATGC 1 cut(s) 563
PaeR7I CTCGAG 1 cut(s) 1281
PagI TCATGA 2 cut(s) 1036, 1267
PciI ACATGT 1 cut(s) 978
PctI GAATGC 2 cut(s) 913, 1082
PfeI GAWTC 7 cut(s) 154, 529, 698, 773, 962, 986, 1145
PfoI TCCNGGA 1 cut(s) 790
PkrI GCNGC 4 cut(s) 658, 879, 1697, 1750
PleI GAGTC 7 cut(s) 127, 268, 670, 700, 1258, 1320, 1399
PpsI GAGTC 7 cut(s) 127, 268, 670, 700, 1258, 1320, 1399
PscI ACATGT 1 cut(s) 978
PsiI TTATAA 2 cut(s) 863, 1101
Psp124BI GAGCTC 1 cut(s) 1543
Psp6I CCWGG 2 cut(s) 790, 1711
PspFI CCCAGC 1 cut(s) 272
PspGI CCWGG 2 cut(s) 790, 1711
PspN4I GGNNCC 1 cut(s) 1491
PspPI GGNCC 2 cut(s) 1201, 1368
PstI CTGCAG 1 cut(s) 142
RsaI GTAC 5 cut(s) 99, 108, 1171, 1220, 1554
RsaNI GTAC 5 cut(s) 98, 107, 1170, 1219, 1553
RseI CAYNNNNRTG 1 cut(s) 837
SacI GAGCTC 1 cut(s) 1543
SaqAI TTAA 8 cut(s) 750, 825, 1062, 1184, 1245, 1500, 1557, 1586
SatI GCNGC 4 cut(s) 657, 878, 1696, 1749
Sau3AI GATC 1 cut(s) 1772
Sau96I GGNCC 2 cut(s) 1201, 1368
SchI GAGTC 7 cut(s) 127, 269, 670, 701, 1258, 1320, 1399
ScrFI CCNGG 2 cut(s) 792, 1713
SduI GDGCHC 2 cut(s) 1357, 1543
SfaNI GCATC 3 cut(s) 1216, 1327, 1714
SfcI CTRYAG 1 cut(s) 138
Sfr274I CTCGAG 1 cut(s) 1281
SfuI TTCGAA 2 cut(s) 485, 1018
SinI GGWCC 1 cut(s) 1201
SlaI CTCGAG 1 cut(s) 1281
SmiMI CAYNNNNRTG 1 cut(s) 837
SmlI CTYRAG 3 cut(s) 1281, 1328, 1556
SmoI CTYRAG 3 cut(s) 1281, 1328, 1556
SpeI ACTAGT 1 cut(s) 602
SphI GCATGC 1 cut(s) 563
SsiI CCGC 5 cut(s) 943, 1229, 1446, 1467, 1749
SspMI CTAG 3 cut(s) 395, 603, 1544
SstI GAGCTC 1 cut(s) 1543
StyD4I CCNGG 2 cut(s) 790, 1711
TaaI ACNGT 8 cut(s) 111, 170, 292, 383, 413, 1169, 1473, 1657
TaiI ACGT 1 cut(s) 1175
TaqI TCGA 6 cut(s) 152, 485, 664, 674, 1018, 1282
TatI WGTACW 3 cut(s) 97, 106, 1552
TauI GCSGC 1 cut(s) 1751
TfiI GAWTC 7 cut(s) 154, 529, 698, 773, 962, 986, 1145
Tru1I TTAA 8 cut(s) 750, 825, 1062, 1184, 1245, 1500, 1557, 1586
Tru9I TTAA 8 cut(s) 750, 825, 1062, 1184, 1245, 1500, 1557, 1586
TseFI GTSAC 2 cut(s) 830, 890
TseI GCWGC 3 cut(s) 656, 877, 1695
Tsp45I GTSAC 2 cut(s) 830, 890
TspDTI ATGAA 8 cut(s) 180, 264, 900, 1025, 1284, 1580, 1658, 1749
TspGWI ACGGA 2 cut(s) 1502, 1635
Vha464I CTTAAG 1 cut(s) 1556
VpaK11BI GGWCC 1 cut(s) 1201
XapI RAATTY 7 cut(s) 175, 283, 316, 424, 595, 670, 1058
XbaI TCTAGA 1 cut(s) 1543
XceI RCATGY 3 cut(s) 563, 982, 1553
XhoI CTCGAG 1 cut(s) 1281
XspI CTAG 3 cut(s) 395, 603, 1544
Zsp2I ATGCAT 2 cut(s) 561, 1084
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.